Clone Sequence Records
BS09822.5prime Sequence
892 bp (822 high quality bases) assembled on 2006-04-19
> BS09822.5prime
GAAGTTATCAGTCGACATGGGCGACAAGGAGGAGCCCGTAACACCCGCTC
CCTCGCCCACGGAGGAGGGTATGGCCAATATTGGGTCTGCTGGAGCCGGG
GATCAGCCGCAAACTTCAGGGAATAATACCAACGTTAAGATCGTGATCAT
TGGAGCTGGAATGGCTGGCCTATCGGCTGCAAATCACCTTTTGCAAAACG
GCTGTGACGATTTCCTTATTCTGGAGGCACGGGGCCGGGTGGGCGGACGC
ATTGTGTCCATACCGCTCAGCAATAATCAGAAGATAGAACTTGGCGCCAA
CTGGATACACGGCGTTCTGGGCAATCCCATCTTTGAGCTGGCCGTACAAC
ATGGTCTAGTCAGCGTGGTCAACGTACCGAAACCGCACAAGGTGGTGGCC
ACCACGGAGGACGGGCACCAGGTGCCTTTTAACATACTTCAGGAGATCTA
CGAGGCGTACGTCTGCTTTCTGAGGCGGTGCGATGAGTATTTCCTGTGTC
AGTACAGCCCGCCGCCGGATATACACAGCGTGGGAGAGCACATTAACTAT
GAGATCGAAATCTATCTGAGCGGGGTCCAGGATCCCAAGGAAAAACGCCT
CAAGCAATCCATATTTAACTGCCTGCTCAAGCGAGAGACCTGCATTACCG
GCTGCAACAACATGGACGAGGTGGATCTCCTCGAACTTGGCAGCTACACT
GAGCTACAAGGAGGCAATATAGTGTTGCCAACTGGTTATAGCTCTATTCT
GCGACCGCTGGGTGCTCAGATAGCCAAGCAGTCCATACTGACCAAATGCC
CGGTGAAGAAATCCACTGGAAGCGAAAAAGACTTCACTGGGCTGGAGACA
GTCGACGAGAACTCGGAGGACGAGCATTCAGACGACTCTGAA
BS09822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-PA | 1752 | CG8032-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG8032-PA | 1752 | CG8032-RA | 819..879 | 832..892 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-RB | 2796 | CG8032-RB | 369..1247 | 17..892 | 4320 | 99.7 | Plus |
CG8032-RA | 2167 | CG8032-RA | 159..1037 | 17..892 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8665435..8665843 | 282..690 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 8664483..8664749 | 17..283 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 8665897..8666103 | 689..892 | 885 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:02:44 has no hits.
BS09822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:51 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-PA | 1..877 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:40 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-PA | 1..877 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:26 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 155..1037 | 10..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:01 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 155..1037 | 10..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:01 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8665898..8666103 | 690..892 | 98 | | Plus |
3R | 8664479..8664749 | 10..283 | 98 | -> | Plus |
3R | 8665437..8665842 | 284..689 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:26 Download gff for
BS09822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4490201..4490471 | 10..283 | 98 | -> | Plus |
arm_3R | 4491159..4491564 | 284..689 | 100 | -> | Plus |
arm_3R | 4491620..4491825 | 690..892 | 98 | | Plus |
BS09822.3prime Sequence
461 bp (456 high quality bases) assembled on 2006-04-19
> BS09822.3prime
ATGGTCTAGAAAGCTTTCAGTCCAGGGGCAATGGCCCTGGTATNNCCAGG
CGCTCAGAAATCACTGCNNNCGTCCGAAACTCCATGANNTGATTTCGTCT
GGGGCTCANNTCGCTCGCCAGCAAATGCTGCGCTGCCGTCCGTCCGCTCA
AATAGGCGCCGTGTACGGTAGAGTAGAAACTGGAATGGGTGTGCTCTCCG
GCAAAGACTATGGCGGGCTTCATGGCTTGGGGCGTGGCATAGAGGGGCTG
GGCGAGGTTCTCGATGTCCTCCTGAGTTGCGCCCACCGGTATTGAGGTGT
ATGCGCCACCGGTGAAGTCCTGCGACTTCCAACTGGTACAAACACATCGC
TTTGGCTTGGGCACGTAAGGATCCTGCAGAAAGTTCCTAAGTATTTCCGT
ACACTTTTCAGCCACTGCCTCATGGTCGAGCTTCTCCATGTACTCCGCCC
TCCCGGCCCGA
BS09822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-PA | 1752 | CG8032-RA | 1338..1676 | 449..111 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-RB | 2796 | CG8032-RB | 1695..2120 | 461..17 | 1830 | 95.7 | Minus |
CG8032-RA | 2167 | CG8032-RA | 1485..1910 | 461..17 | 1830 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8666734..8666855 | 339..218 | 610 | 100 | Minus |
3R | 32079331 | 3R | 8666551..8666672 | 461..339 | 565 | 99.2 | Minus |
3R | 32079331 | 3R | 8666912..8667020 | 219..111 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:11:47 has no hits.
BS09822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:50 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-PA | 1328..1752 | 17..460 | 95 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:38 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-PA | 1328..1752 | 17..460 | 95 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:04 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 1486..1910 | 17..460 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:27:23 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 1486..1910 | 17..460 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:23 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8666552..8666672 | 339..460 | 99 | -> | Minus |
3R | 8666735..8666855 | 218..338 | 100 | -> | Minus |
3R | 8666914..8667096 | 17..217 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:04 Download gff for
BS09822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4492274..4492394 | 339..460 | 99 | -> | Minus |
arm_3R | 4492457..4492577 | 218..338 | 100 | -> | Minus |
arm_3R | 4492636..4492818 | 17..217 | 91 | | Minus |
BS09822.complete Sequence
1784 bp assembled on 2009-08-24
GenBank Submission: KX805580
> BS09822.complete
GAAGTTATCAGTCGACATGGGCGACAAGGAGGAGCCCGTAACACCCGCTC
CCTCGCCCACGGAGGAGGGTATGGCCAATATTGGGTCTGCTGGAGCCGGG
GATCAGCCGCAAACTTCAGGGAATAATACCAACGTTAAGATCGTGATCAT
TGGAGCTGGAATGGCTGGCCTATCGGCTGCAAATCACCTTTTGCAAAACG
GCTGTGACGATTTCCTTATTCTGGAGGCACGGGGCCGGGTGGGCGGACGC
ATTGTGTCCATACCGCTCAGCAATAATCAGAAGATAGAACTTGGCGCCAA
CTGGATACACGGCGTTCTGGGCAATCCCATCTTTGAGCTGGCCGTACAAC
ATGGTCTAGTCAGCGTGGTCAACGTACCGAAACCGCACAAGGTGGTGGCC
ACCACGGAGGACGGGCACCAGGTGCCTTTTAACATACTTCAGGAGATCTA
CGAGGCGTACGTCTGCTTTCTGAGGCGGTGCGATGAGTATTTCCTGTGTC
AGTACAGCCCGCCGCCGGATATACACAGCGTGGGAGAGCACATTAACTAT
GAGATCGAAATCTATCTGAGCGGGGTCCAGGATCCCAAGGAAAAACGCCT
CAAGCAATCCATATTTAACTGCCTGCTCAAGCGAGAGACCTGCATTACCG
GCTGCAACAACATGGACGAGGTGGATCTCCTCGAACTTGGCAGCTACACT
GAGCTACAAGGAGGCAATATAGTGTTGCCAACTGGTTATAGCTCTATTCT
GCGACCGCTGGGTGCTCAGATAGCCAAGCAGTCCATACTGACCAAATGCC
CGGTGAAGAAAATCCACTGGAAGCGGAAAAAGACCTTCACTGGGCTGGAG
ACAGTCGACGAGAACTCGGAGGACGAGCATTCAGACGACTCTGAACGAAC
GGTGACGGAAGTGCCGACGGGGGAAATTCGTGGCGCCTCCGTGGAGTCCA
ACACCAGCAGCAATTGTGATTATCCTGCAGGCAACGTGCGCATAGATTGC
GAGGACGGTCGAGTGTTCCATGCAGCCCATGTGATATGCACCATACCGCT
AGGCGTACTGAAAAACACCCATCGCACTCTCTTCGATCCTGTGCTGCCGC
AGTACAAACAGGAGTCCATCGAGAATCTCATGTTCGGCACCGTGGACAAG
ATCTTCTTGGAGTACGAGCGACCATTCCTCAGTGCCGATATATCAGAGAT
TATGCTATTGTGGGACGACGATAAGCGGGATATGAACAGCTCCGAGGAGG
AGCTGGCCAGCGAAGCGTATCTCAGCAAGAATTGGTTCAAGAAGATATAT
TCGTTTGCCAAGGTGACGGACACGCTGCTCTTGGGCTGGGTCTCGGGCCG
GGAGGCGGAGTACATGGAGAAGCTCGACCATGAGGCAGTGGCTGAAAAGT
GTACGGAAATACTTAGGAACTTTCTGCAGGATCCTTACGTGCCCAAGCCA
AAGCGATGTGTTTGTACCAGTTGGAAGTCGCAGGACTTCACCGGTGGCGC
ATACACCTCAATACCGGTGGGCGCAACTCAGGAGGACATCGAGAACCTCG
CCCAGCCCCTCTATGCCACGCCCCAAGCCATGAAGCCCGCCATAGTCTTT
GCCGGAGAGCACACCCATTCCAGTTTCTACTCTACCGTACACGGCGCCTA
TTTGAGCGGACGGACGGCAGCGCAGCATTTGCTGGCGAGCGATGAGCCAG
ACGAAATCATCATGGAGTCGGACGGCAGTGATCTGAGCGCCTGGATACAG
GGCATTGCCCTGGACTGAAAGCTTTCTAGACCAT
BS09822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-RB | 1752 | CG8032-PB | 1..1752 | 17..1768 | 8760 | 100 | Plus |
CG8032-RA | 1752 | CG8032-PA | 1..1752 | 17..1768 | 8760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-RB | 2796 | CG8032-RB | 369..2120 | 17..1768 | 8760 | 100 | Plus |
CG8032-RA | 2167 | CG8032-RA | 159..1910 | 17..1768 | 8760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8665897..8666672 | 689..1464 | 3880 | 100 | Plus |
3R | 32079331 | 3R | 8665435..8665843 | 282..690 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 8664483..8664749 | 17..283 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 8666912..8667096 | 1584..1768 | 925 | 100 | Plus |
3R | 32079331 | 3R | 8666734..8666855 | 1464..1585 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:30:05 has no hits.
BS09822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:11 Download gff for
BS09822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 121..1871 | 17..1767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:26 Download gff for
BS09822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 159..1909 | 17..1767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:04 Download gff for
BS09822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8032-RA | 159..1909 | 17..1767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:04 Download gff for
BS09822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8664483..8664749 | 17..283 | 100 | -> | Plus |
3R | 8665437..8665842 | 284..689 | 100 | -> | Plus |
3R | 8665898..8666672 | 690..1464 | 100 | -> | Plus |
3R | 8666735..8666855 | 1465..1585 | 100 | -> | Plus |
3R | 8666914..8667095 | 1586..1767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:26 Download gff for
BS09822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4490205..4490471 | 17..283 | 100 | -> | Plus |
arm_3R | 4491159..4491564 | 284..689 | 100 | -> | Plus |
arm_3R | 4491620..4492394 | 690..1464 | 100 | -> | Plus |
arm_3R | 4492457..4492577 | 1465..1585 | 100 | -> | Plus |
arm_3R | 4492636..4492817 | 1586..1767 | 100 | | Plus |
BS09822.pep Sequence
Translation from 16 to 1767
> BS09822.pep
MGDKEEPVTPAPSPTEEGMANIGSAGAGDQPQTSGNNTNVKIVIIGAGMA
GLSAANHLLQNGCDDFLILEARGRVGGRIVSIPLSNNQKIELGANWIHGV
LGNPIFELAVQHGLVSVVNVPKPHKVVATTEDGHQVPFNILQEIYEAYVC
FLRRCDEYFLCQYSPPPDIHSVGEHINYEIEIYLSGVQDPKEKRLKQSIF
NCLLKRETCITGCNNMDEVDLLELGSYTELQGGNIVLPTGYSSILRPLGA
QIAKQSILTKCPVKKIHWKRKKTFTGLETVDENSEDEHSDDSERTVTEVP
TGEIRGASVESNTSSNCDYPAGNVRIDCEDGRVFHAAHVICTIPLGVLKN
THRTLFDPVLPQYKQESIENLMFGTVDKIFLEYERPFLSADISEIMLLWD
DDKRDMNSSEEELASEAYLSKNWFKKIYSFAKVTDTLLLGWVSGREAEYM
EKLDHEAVAEKCTEILRNFLQDPYVPKPKRCVCTSWKSQDFTGGAYTSIP
VGATQEDIENLAQPLYATPQAMKPAIVFAGEHTHSSFYSTVHGAYLSGRT
AAQHLLASDEPDEIIMESDGSDLSAWIQGIALD*
BS09822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8032-PB | 583 | CG8032-PB | 1..583 | 1..583 | 3077 | 100 | Plus |
CG8032-PA | 583 | CG8032-PA | 1..583 | 1..583 | 3077 | 100 | Plus |
CG6034-PA | 479 | CG6034-PA | 3..469 | 27..555 | 441 | 28.5 | Plus |
CG7460-PC | 486 | CG7460-PC | 249..475 | 321..555 | 337 | 39.2 | Plus |
CG7460-PB | 486 | CG7460-PB | 249..475 | 321..555 | 337 | 39.2 | Plus |
CG7460-PC | 486 | CG7460-PC | 10..96 | 34..124 | 172 | 39.6 | Plus |