Clone BS09822 Report

Search the DGRC for BS09822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG8032-RA
Protein status:BS09822.pep: full length peptide match
Sequenced Size:1784

Clone Sequence Records

BS09822.5prime Sequence

892 bp (822 high quality bases) assembled on 2006-04-19

> BS09822.5prime
GAAGTTATCAGTCGACATGGGCGACAAGGAGGAGCCCGTAACACCCGCTC
CCTCGCCCACGGAGGAGGGTATGGCCAATATTGGGTCTGCTGGAGCCGGG
GATCAGCCGCAAACTTCAGGGAATAATACCAACGTTAAGATCGTGATCAT
TGGAGCTGGAATGGCTGGCCTATCGGCTGCAAATCACCTTTTGCAAAACG
GCTGTGACGATTTCCTTATTCTGGAGGCACGGGGCCGGGTGGGCGGACGC
ATTGTGTCCATACCGCTCAGCAATAATCAGAAGATAGAACTTGGCGCCAA
CTGGATACACGGCGTTCTGGGCAATCCCATCTTTGAGCTGGCCGTACAAC
ATGGTCTAGTCAGCGTGGTCAACGTACCGAAACCGCACAAGGTGGTGGCC
ACCACGGAGGACGGGCACCAGGTGCCTTTTAACATACTTCAGGAGATCTA
CGAGGCGTACGTCTGCTTTCTGAGGCGGTGCGATGAGTATTTCCTGTGTC
AGTACAGCCCGCCGCCGGATATACACAGCGTGGGAGAGCACATTAACTAT
GAGATCGAAATCTATCTGAGCGGGGTCCAGGATCCCAAGGAAAAACGCCT
CAAGCAATCCATATTTAACTGCCTGCTCAAGCGAGAGACCTGCATTACCG
GCTGCAACAACATGGACGAGGTGGATCTCCTCGAACTTGGCAGCTACACT
GAGCTACAAGGAGGCAATATAGTGTTGCCAACTGGTTATAGCTCTATTCT
GCGACCGCTGGGTGCTCAGATAGCCAAGCAGTCCATACTGACCAAATGCC
CGGTGAAGAAATCCACTGGAAGCGAAAAAGACTTCACTGGGCTGGAGACA
GTCGACGAGAACTCGGAGGACGAGCATTCAGACGACTCTGAA

BS09822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-PA 1752 CG8032-RA 1..795 17..811 3975 100 Plus
CG8032-PA 1752 CG8032-RA 819..879 832..892 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-RB 2796 CG8032-RB 369..1247 17..892 4320 99.7 Plus
CG8032-RA 2167 CG8032-RA 159..1037 17..892 4320 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8665435..8665843 282..690 2045 100 Plus
3R 32079331 3R 8664483..8664749 17..283 1335 100 Plus
3R 32079331 3R 8665897..8666103 689..892 885 98.6 Plus
Blast to na_te.dros performed on 2015-02-11 12:02:44 has no hits.

BS09822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:51 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-PA 1..877 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:40 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-PA 1..877 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:26 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 155..1037 10..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:01 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 155..1037 10..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:01 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8665898..8666103 690..892 98   Plus
3R 8664479..8664749 10..283 98 -> Plus
3R 8665437..8665842 284..689 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:26 Download gff for BS09822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4490201..4490471 10..283 98 -> Plus
arm_3R 4491159..4491564 284..689 100 -> Plus
arm_3R 4491620..4491825 690..892 98   Plus

BS09822.3prime Sequence

461 bp (456 high quality bases) assembled on 2006-04-19

> BS09822.3prime
ATGGTCTAGAAAGCTTTCAGTCCAGGGGCAATGGCCCTGGTATNNCCAGG
CGCTCAGAAATCACTGCNNNCGTCCGAAACTCCATGANNTGATTTCGTCT
GGGGCTCANNTCGCTCGCCAGCAAATGCTGCGCTGCCGTCCGTCCGCTCA
AATAGGCGCCGTGTACGGTAGAGTAGAAACTGGAATGGGTGTGCTCTCCG
GCAAAGACTATGGCGGGCTTCATGGCTTGGGGCGTGGCATAGAGGGGCTG
GGCGAGGTTCTCGATGTCCTCCTGAGTTGCGCCCACCGGTATTGAGGTGT
ATGCGCCACCGGTGAAGTCCTGCGACTTCCAACTGGTACAAACACATCGC
TTTGGCTTGGGCACGTAAGGATCCTGCAGAAAGTTCCTAAGTATTTCCGT
ACACTTTTCAGCCACTGCCTCATGGTCGAGCTTCTCCATGTACTCCGCCC
TCCCGGCCCGA

BS09822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-PA 1752 CG8032-RA 1338..1676 449..111 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-RB 2796 CG8032-RB 1695..2120 461..17 1830 95.7 Minus
CG8032-RA 2167 CG8032-RA 1485..1910 461..17 1830 95.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8666734..8666855 339..218 610 100 Minus
3R 32079331 3R 8666551..8666672 461..339 565 99.2 Minus
3R 32079331 3R 8666912..8667020 219..111 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:11:47 has no hits.

BS09822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:50 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-PA 1328..1752 17..460 95   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:38 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-PA 1328..1752 17..460 95   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:04 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 1486..1910 17..460 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:27:23 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 1486..1910 17..460 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:23 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8666552..8666672 339..460 99 -> Minus
3R 8666735..8666855 218..338 100 -> Minus
3R 8666914..8667096 17..217 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:04 Download gff for BS09822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4492274..4492394 339..460 99 -> Minus
arm_3R 4492457..4492577 218..338 100 -> Minus
arm_3R 4492636..4492818 17..217 91   Minus

BS09822.complete Sequence

1784 bp assembled on 2009-08-24

GenBank Submission: KX805580

> BS09822.complete
GAAGTTATCAGTCGACATGGGCGACAAGGAGGAGCCCGTAACACCCGCTC
CCTCGCCCACGGAGGAGGGTATGGCCAATATTGGGTCTGCTGGAGCCGGG
GATCAGCCGCAAACTTCAGGGAATAATACCAACGTTAAGATCGTGATCAT
TGGAGCTGGAATGGCTGGCCTATCGGCTGCAAATCACCTTTTGCAAAACG
GCTGTGACGATTTCCTTATTCTGGAGGCACGGGGCCGGGTGGGCGGACGC
ATTGTGTCCATACCGCTCAGCAATAATCAGAAGATAGAACTTGGCGCCAA
CTGGATACACGGCGTTCTGGGCAATCCCATCTTTGAGCTGGCCGTACAAC
ATGGTCTAGTCAGCGTGGTCAACGTACCGAAACCGCACAAGGTGGTGGCC
ACCACGGAGGACGGGCACCAGGTGCCTTTTAACATACTTCAGGAGATCTA
CGAGGCGTACGTCTGCTTTCTGAGGCGGTGCGATGAGTATTTCCTGTGTC
AGTACAGCCCGCCGCCGGATATACACAGCGTGGGAGAGCACATTAACTAT
GAGATCGAAATCTATCTGAGCGGGGTCCAGGATCCCAAGGAAAAACGCCT
CAAGCAATCCATATTTAACTGCCTGCTCAAGCGAGAGACCTGCATTACCG
GCTGCAACAACATGGACGAGGTGGATCTCCTCGAACTTGGCAGCTACACT
GAGCTACAAGGAGGCAATATAGTGTTGCCAACTGGTTATAGCTCTATTCT
GCGACCGCTGGGTGCTCAGATAGCCAAGCAGTCCATACTGACCAAATGCC
CGGTGAAGAAAATCCACTGGAAGCGGAAAAAGACCTTCACTGGGCTGGAG
ACAGTCGACGAGAACTCGGAGGACGAGCATTCAGACGACTCTGAACGAAC
GGTGACGGAAGTGCCGACGGGGGAAATTCGTGGCGCCTCCGTGGAGTCCA
ACACCAGCAGCAATTGTGATTATCCTGCAGGCAACGTGCGCATAGATTGC
GAGGACGGTCGAGTGTTCCATGCAGCCCATGTGATATGCACCATACCGCT
AGGCGTACTGAAAAACACCCATCGCACTCTCTTCGATCCTGTGCTGCCGC
AGTACAAACAGGAGTCCATCGAGAATCTCATGTTCGGCACCGTGGACAAG
ATCTTCTTGGAGTACGAGCGACCATTCCTCAGTGCCGATATATCAGAGAT
TATGCTATTGTGGGACGACGATAAGCGGGATATGAACAGCTCCGAGGAGG
AGCTGGCCAGCGAAGCGTATCTCAGCAAGAATTGGTTCAAGAAGATATAT
TCGTTTGCCAAGGTGACGGACACGCTGCTCTTGGGCTGGGTCTCGGGCCG
GGAGGCGGAGTACATGGAGAAGCTCGACCATGAGGCAGTGGCTGAAAAGT
GTACGGAAATACTTAGGAACTTTCTGCAGGATCCTTACGTGCCCAAGCCA
AAGCGATGTGTTTGTACCAGTTGGAAGTCGCAGGACTTCACCGGTGGCGC
ATACACCTCAATACCGGTGGGCGCAACTCAGGAGGACATCGAGAACCTCG
CCCAGCCCCTCTATGCCACGCCCCAAGCCATGAAGCCCGCCATAGTCTTT
GCCGGAGAGCACACCCATTCCAGTTTCTACTCTACCGTACACGGCGCCTA
TTTGAGCGGACGGACGGCAGCGCAGCATTTGCTGGCGAGCGATGAGCCAG
ACGAAATCATCATGGAGTCGGACGGCAGTGATCTGAGCGCCTGGATACAG
GGCATTGCCCTGGACTGAAAGCTTTCTAGACCAT

BS09822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-RB 1752 CG8032-PB 1..1752 17..1768 8760 100 Plus
CG8032-RA 1752 CG8032-PA 1..1752 17..1768 8760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-RB 2796 CG8032-RB 369..2120 17..1768 8760 100 Plus
CG8032-RA 2167 CG8032-RA 159..1910 17..1768 8760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8665897..8666672 689..1464 3880 100 Plus
3R 32079331 3R 8665435..8665843 282..690 2045 100 Plus
3R 32079331 3R 8664483..8664749 17..283 1335 100 Plus
3R 32079331 3R 8666912..8667096 1584..1768 925 100 Plus
3R 32079331 3R 8666734..8666855 1464..1585 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:30:05 has no hits.

BS09822.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:11 Download gff for BS09822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 121..1871 17..1767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:26 Download gff for BS09822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 159..1909 17..1767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:04 Download gff for BS09822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8032-RA 159..1909 17..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:04 Download gff for BS09822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8664483..8664749 17..283 100 -> Plus
3R 8665437..8665842 284..689 100 -> Plus
3R 8665898..8666672 690..1464 100 -> Plus
3R 8666735..8666855 1465..1585 100 -> Plus
3R 8666914..8667095 1586..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:26 Download gff for BS09822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4490205..4490471 17..283 100 -> Plus
arm_3R 4491159..4491564 284..689 100 -> Plus
arm_3R 4491620..4492394 690..1464 100 -> Plus
arm_3R 4492457..4492577 1465..1585 100 -> Plus
arm_3R 4492636..4492817 1586..1767 100   Plus

BS09822.pep Sequence

Translation from 16 to 1767

> BS09822.pep
MGDKEEPVTPAPSPTEEGMANIGSAGAGDQPQTSGNNTNVKIVIIGAGMA
GLSAANHLLQNGCDDFLILEARGRVGGRIVSIPLSNNQKIELGANWIHGV
LGNPIFELAVQHGLVSVVNVPKPHKVVATTEDGHQVPFNILQEIYEAYVC
FLRRCDEYFLCQYSPPPDIHSVGEHINYEIEIYLSGVQDPKEKRLKQSIF
NCLLKRETCITGCNNMDEVDLLELGSYTELQGGNIVLPTGYSSILRPLGA
QIAKQSILTKCPVKKIHWKRKKTFTGLETVDENSEDEHSDDSERTVTEVP
TGEIRGASVESNTSSNCDYPAGNVRIDCEDGRVFHAAHVICTIPLGVLKN
THRTLFDPVLPQYKQESIENLMFGTVDKIFLEYERPFLSADISEIMLLWD
DDKRDMNSSEEELASEAYLSKNWFKKIYSFAKVTDTLLLGWVSGREAEYM
EKLDHEAVAEKCTEILRNFLQDPYVPKPKRCVCTSWKSQDFTGGAYTSIP
VGATQEDIENLAQPLYATPQAMKPAIVFAGEHTHSSFYSTVHGAYLSGRT
AAQHLLASDEPDEIIMESDGSDLSAWIQGIALD*

BS09822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8032-PB 583 CG8032-PB 1..583 1..583 3077 100 Plus
CG8032-PA 583 CG8032-PA 1..583 1..583 3077 100 Plus
CG6034-PA 479 CG6034-PA 3..469 27..555 441 28.5 Plus
CG7460-PC 486 CG7460-PC 249..475 321..555 337 39.2 Plus
CG7460-PB 486 CG7460-PB 249..475 321..555 337 39.2 Plus
CG7460-PC 486 CG7460-PC 10..96 34..124 172 39.6 Plus