Clone Sequence Records
BS09830.complete Sequence
1889 bp assembled on 2009-12-07
GenBank Submission: KX803048
> BS09830.complete
GAAGTTATCAGTCGACATGTCACAAAACGACAACCTACTCATCCAGATCC
GCGCCCTTCTCCAGTCCGATGGCGAGAAGCTGTGGGAGGAGCCCTACTAC
TCCGAAGATCTTGGTAGCATCGAGGGAGCACTAGAAAACCTGGCGCAGAA
GTACTCCGGCATGTTGGGCATCGATATAGGTCGCTGCAAGTTCTTTTTGA
CCGAGCTGCAGGAAAATGCTCTCCGTACGCTGGCCGCCCGACGTGAGTTC
AGCACCACAGGAATTGCCACGTTGAAGGTTCGCCGCGTTGGCGAGCACAG
CGGTGCCACAATGGTGGAAGTGAAGTGCAGCTTGGACATCGTGGGCTCCG
AACTCCAGGCATGCATAGCGAAGAAACTGGAAGTGCCGAATGCTGCGCAC
GTCAAGTGCATCGCTGCCGGCAAAGTGGTGTCCGCCAATGCCACTTTGGC
CGACCAGCAGTTGAAGAACAACCAGCAGTTGATTGTCATTGTGGGCGATG
GGGATAATTCTGGCGAAGCCCTGTACGAAAGGATCAATCGCATCAAGGCC
GATGTGGAGGCGGTGGTGTCCTCGAAGAATAACCTAATAGAGATGGAGGA
TCAGAATGGCAGCCAAGTGTATTTGCCGCCTTCCGAGCATAAAGCCCTGC
TCATGGGTTTGGGATTCTGTGAGAAGGCCCGTGCGGCCATGAATCGCAAG
CATTTTGAGGAGGCTCTGCTCCTGCTTTTGGAGGCCGACGAGCATTTTTC
TACCTGTGGCTCAAAGTTTCTAGAGTCCGTGGATAACTATGCTTTGCTGA
ACCTCGACATAGTGTGGTGCTATTTTTGCCTGAAGAACGTTACCCAGCTC
CCGGATGCTGAGCATCGCTTGGCCCGCTGCAGTCGCAATTTCGGCATCAG
CTATGGCGACAATTTGGAGAGGCTGTACTCCTTGAAGGGCAAGGACTGTC
CCGAGAGGGCTTTAATTATGCGGCTTAAGTTGCTCCAGGGCGTGATCTTC
TTCCACCAGAATCTTCGCAATCAGGCATTTGAGTGCTTCGAAGCGGCTAA
AACTCTGCTAAATGAACTAAAGATCAACAACGACCAACTGGCTCTCCTGG
TCGATATGGGCTTCGAGCCCTCCGAGGCTCGTATGGCCCTGCGCTCCTGC
AAGGGCGGCACCGCCGTCGAACAGGCTGTTCAGTTTATTCACGAGCGTCG
TCAGCAGCTCAAGAATGCACGCATGAAATATAAAGCGTCCGAGCGTGCTA
TGGAGCGCCGCCTGAAGCGCTCCAATTCCAAAGATTGCACCTGGGTGAAT
CCCCGCAGTGTCTGCAGCCTTGCTGACATGGGATTCGAGAGCGGACTGGC
CACTATCGCCTTGCAGCGCTCTAATAATGATATCCTCCAAGCGGTGGAAC
TGCTGCAGACAGAATCGGACGAACTTACTGGTGCTTCGCCATGGTTTCCG
GTCACCGTAGACACGACCAAACTGGCTCAGCTTCTGCAACTGGGATTCAA
CGAGAACGACTCGCGCGTGGCCCTACAGAATGCATCAAATAACATGGAAG
AGGCCATCGAGAGTCTGATGTGCGCCATAGAGAGCGAGGAGGAGCTGAAA
GCGATTTTAAAGCACGTTGGGCGTTTGGCCGAAAATGGTGGGCAAAATCT
TGACGGCCCCTCTACTTCGAACGCCTCCGGGCAGACGCAAGTTGCTTTGC
CAGCGCCCATTATCGAAGCTGTTATCAATCATGCTCGCGTCGAGATTGAA
ACGTACAAGGCCTACGAGCGCTTTAACTCCGACCTCAAACTGAGCGACCT
GGAATACCTGGACTTGCCACTTATCCAGGAGGAGAAGATCCTGACTGAGT
ATTTCAATATGCTGCAGCAGTAGAAGCATTCTAGACCAT
BS09830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-RH | 1857 | CG15445-PH | 1..1857 | 17..1873 | 9285 | 100 | Plus |
CG15445-RG | 1857 | CG15445-PG | 1..1857 | 17..1873 | 9285 | 100 | Plus |
CG15445-RF | 1857 | CG15445-PF | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-RH | 2215 | CG15445-RH | 284..2140 | 17..1873 | 9285 | 100 | Plus |
CG15445-RG | 2216 | CG15445-RG | 285..2141 | 17..1873 | 9285 | 100 | Plus |
CG15445-RF | 2320 | CG15445-RF | 278..2134 | 17..1873 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21118860..21119664 | 591..1395 | 4025 | 100 | Plus |
X | 23542271 | X | 21119778..21120258 | 1393..1873 | 2405 | 100 | Plus |
X | 23542271 | X | 21118316..21118771 | 137..592 | 2280 | 100 | Plus |
X | 23542271 | X | 21117496..21117615 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:09:54 has no hits.
BS09830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:22 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RD | 291..2147 | 17..1873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:34 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 278..2134 | 17..1873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:20 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RD | 291..2147 | 17..1873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:21 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 278..2134 | 17..1873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:21 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21117496..21117615 | 17..136 | 100 | -> | Plus |
X | 21118316..21118771 | 137..592 | 100 | -> | Plus |
X | 21118862..21119662 | 593..1393 | 100 | -> | Plus |
X | 21119779..21120258 | 1394..1873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:34 Download gff for
BS09830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20988523..20988642 | 17..136 | 100 | -> | Plus |
arm_X | 20989343..20989798 | 137..592 | 100 | -> | Plus |
arm_X | 20989889..20990689 | 593..1393 | 100 | -> | Plus |
arm_X | 20990806..20991285 | 1394..1873 | 100 | | Plus |
BS09830.3prime Sequence
888 bp (832 high quality bases) assembled on 2006-04-19
> BS09830.3prime
ATGGTCTAGAATGCTTCTACTGCTGCAGCATATTGAAATACTCAGTCAGG
ATCTTCTCCTCCTGGATAAGTGGCAAGTCCAGGTATTCCAGGTCGCTCAG
TTTGAGGTCGGAGTTAAAGCGCTCGTAGGCCTTGTACGTTTCAATCTCGA
CGCGAGCATGATTGATAACAGCTTCGATAATGGGCGCTGGCAAAGCAACT
TGCGTCTGCCCGGAGGCGTTCGAAGTAGAGGGGCCGTCAAGATTTTGCCC
ACCATTTTCGGCCAAACGCCCAACGTGCTTTAAAATCGCTTTCAGCTCCT
CCTCGCTCTCTATGGCGCACATCAGACTCTCGATGGCCTCTTCCATGTTA
TTTGATGCATTCTGTAGGGCCACGCGCGAGTCGTTCTCGTTGAATCCCAG
TTGCAGAAGCTGAGCCAGTTTGGTCGTGTCTACGGTGACCGGAAACCATG
GCGAAGCACCAGTAAGTTCGTCCGATTCTGTCTGCAGCAGTTCCACCGCT
TGGAGGATATCATTATTAGAGCGCTGCAAGGCGATAGTGGCCAGTCCGCT
CTCGAATCCCATGTCAGCAAGGCTGCAGACACTGCGGGGATTCACCCAGG
TGCAATCTTTGGAATTGGAGCGCTTCAGGCGGCGCTCCATAGCACGCTCG
GACGCTTTATATTTCATGCGTGCATTCTTGAGCTGCTGACGACGCTCGTG
AATAAACTGAACAGCCTGTTCGACGGCGGTGCCGCCCTTGCAGGAGCGCA
GGGCCATACGAGCCTCGGAGGGCTCGAAGCCCATATCGACCAGGAGAGCC
AGTTGGTCGTTGTTGATCTTTAGTTCATTTAGCAGAGTTTTAGCCGCTTC
GAAGCACTCAAATGCCTGATTGCGAAGATTCTGGTGGA
BS09830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-PA | 1857 | CG15445-RA | 986..1857 | 888..17 | 4360 | 100 | Minus |
CG15445-PD | 1941 | CG15445-RD | 1070..1941 | 888..17 | 4360 | 100 | Minus |
CG15445-PC | 1740 | CG15445-RC | 986..1459 | 888..415 | 2370 | 100 | Minus |
CG15445-PB | 1824 | CG15445-RB | 1070..1543 | 888..415 | 2370 | 100 | Minus |
CG15445-PC | 1740 | CG15445-RC | 1458..1740 | 299..17 | 1415 | 100 | Minus |
CG15445-PB | 1824 | CG15445-RB | 1542..1824 | 299..17 | 1415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-RH | 2215 | CG15445-RH | 1269..2140 | 888..17 | 4360 | 100 | Minus |
CG15445-RG | 2216 | CG15445-RG | 1270..2141 | 888..17 | 4360 | 100 | Minus |
CG15445-RF | 2320 | CG15445-RF | 1263..2134 | 888..17 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21119778..21120258 | 497..17 | 2405 | 100 | Minus |
X | 23542271 | X | 21119271..21119664 | 888..495 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:57:28 has no hits.
BS09830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:03 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-PD | 1071..1941 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:57 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-PD | 1071..1941 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:47 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 1264..2137 | 10..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:27 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 1264..2137 | 10..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:27 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21119272..21119662 | 497..887 | 100 | -> | Minus |
X | 21119779..21120261 | 10..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:47 Download gff for
BS09830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20990299..20990689 | 497..887 | 100 | -> | Minus |
arm_X | 20990806..20991288 | 10..496 | 99 | | Minus |
BS09830.5prime Sequence
917 bp (907 high quality bases) assembled on 2006-04-19
> BS09830.5prime
GAAGTTATCAGTCGACATGTCACAAAACGACAACCTACTCATCCAGATCC
GCGCCCTTCTCCAGTCCGATGGCGAGAAGCTGTGGGAGGAGCCCTACTAC
TCCGAAGATCTTGGTAGCATCGAGGGAGCACTAGAAAACCTGGCGCAGAA
GTACTCCGGCATGTTGGGCATCGATATAGGTCGCTGCAAGTTCTTTTTGA
CCGAGCTGCAGGAAAATGCTCTCCGTACGCTGGCCGCCCGACGTGAGTTC
AGCACCACAGGAATTGCCACGTTGAAGGTTCGCCGCGTTGGCGAGCACAG
CGGTGCCACAATGGTGGAAGTGAAGTGCAGCTTGGACATCGTGGGCTCCG
AACTCCAGGCATGCATAGCGAAGAAACTGGAAGTGCCGAATGCTGCGCAC
GTCAAGTGCATCGCTGCCGGCAAAGTGGTGTCCGCCAATGCCACTTTGGC
CGACCAGCAGTTGAAGAACAACCAGCAGTTGATTGTCATTGTGGGCGATG
GGGATAATTCTGGCGAAGCCCTGTACGAAAGGATCAATCGCATCAAGGCC
GATGTGGAGGCGGTGGTGTCCTCGAAGAATAACCTAATAGAGATGGAGGA
TCAGAATGGCAGCCAAGTGTATTTGCCGCCTTCCGAGCATAAAGCCCTGC
TCATGGGTTTGGGATTCTGTGAGAAGGCCCGTGCGGCCATGAATCGCAAG
CATTTTGAGGAGGCTCTGCTCCTGCTTTTGGAGGCCGACGAGCATTTTTC
TACCTGTGGCTCANAGTTTCTAGAGTCCGTGGATAACTATGCTTTGCTGA
ACCTCGACATAGTGTGGTGCTATTTTTGCCTGAAGAACGTTACCCAGCTC
CCGGATGCTGAGCATCGCTTGGCCCGCTGCAGTCGCAATTTCGGCATCAG
CTATGGCGACNATTTGG
BS09830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-PC | 1740 | CG15445-RC | 1..901 | 17..917 | 4467 | 99.7 | Plus |
CG15445-PA | 1857 | CG15445-RA | 1..901 | 17..917 | 4467 | 99.7 | Plus |
CG15445-PB | 1824 | CG15445-RB | 85..985 | 17..917 | 4467 | 99.7 | Plus |
CG15445-PD | 1941 | CG15445-RD | 85..985 | 17..917 | 4467 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-RH | 2215 | CG15445-RH | 284..1184 | 17..917 | 4483 | 99.8 | Plus |
CG15445-RG | 2216 | CG15445-RG | 285..1185 | 17..917 | 4483 | 99.8 | Plus |
CG15445-RF | 2320 | CG15445-RF | 278..1178 | 17..917 | 4483 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21118316..21118771 | 137..592 | 2280 | 100 | Plus |
X | 23542271 | X | 21118860..21119186 | 591..917 | 1613 | 99.4 | Plus |
X | 23542271 | X | 21117496..21117615 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:24:05 has no hits.
BS09830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:05 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-PB | 69..985 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:58 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-PD | 69..985 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:58:35 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 262..1178 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:27 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15445-RF | 262..1178 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:27 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21117480..21117615 | 1..136 | 96 | -> | Plus |
X | 21118316..21118771 | 137..592 | 100 | -> | Plus |
X | 21118862..21119186 | 593..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:58:35 Download gff for
BS09830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20988507..20988642 | 1..136 | 96 | -> | Plus |
arm_X | 20989343..20989798 | 137..592 | 100 | -> | Plus |
arm_X | 20989889..20990213 | 593..917 | 99 | | Plus |
BS09830.pep Sequence
Translation from 16 to 1872
> BS09830.pep
MSQNDNLLIQIRALLQSDGEKLWEEPYYSEDLGSIEGALENLAQKYSGML
GIDIGRCKFFLTELQENALRTLAARREFSTTGIATLKVRRVGEHSGATMV
EVKCSLDIVGSELQACIAKKLEVPNAAHVKCIAAGKVVSANATLADQQLK
NNQQLIVIVGDGDNSGEALYERINRIKADVEAVVSSKNNLIEMEDQNGSQ
VYLPPSEHKALLMGLGFCEKARAAMNRKHFEEALLLLLEADEHFSTCGSK
FLESVDNYALLNLDIVWCYFCLKNVTQLPDAEHRLARCSRNFGISYGDNL
ERLYSLKGKDCPERALIMRLKLLQGVIFFHQNLRNQAFECFEAAKTLLNE
LKINNDQLALLVDMGFEPSEARMALRSCKGGTAVEQAVQFIHERRQQLKN
ARMKYKASERAMERRLKRSNSKDCTWVNPRSVCSLADMGFESGLATIALQ
RSNNDILQAVELLQTESDELTGASPWFPVTVDTTKLAQLLQLGFNENDSR
VALQNASNNMEEAIESLMCAIESEEELKAILKHVGRLAENGGQNLDGPST
SNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLDL
PLIQEEKILTEYFNMLQQ*
BS09830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15445-PH | 618 | CG15445-PH | 1..618 | 1..618 | 3138 | 100 | Plus |
CG15445-PG | 618 | CG15445-PG | 1..618 | 1..618 | 3138 | 100 | Plus |
CG15445-PF | 618 | CG15445-PF | 1..618 | 1..618 | 3138 | 100 | Plus |
CG15445-PE | 618 | CG15445-PE | 1..618 | 1..618 | 3138 | 100 | Plus |
CG15445-PA | 618 | CG15445-PA | 1..618 | 1..618 | 3138 | 100 | Plus |