Clone Sequence Records
BS09836.3prime Sequence
888 bp (793 high quality bases) assembled on 2006-04-19
> BS09836.3prime
ATGGTCTAGAAAGCTTCTAAAACTGCGACATAAGCAGACTCCCACCGACG
CCGCCCCCGCCACCACCTCCTCCTCCGCCGCCGCCACCTGGACCGCCACT
AGTGCCCAGCACAGATCCCAGCAGACCGCCACTTGACATCTGCTGTTGCT
GCATGGGCATCTGCTGTTGCTGCTGCATCTGCATCGATGAGGAGAAGCTA
TTCATGTTCCCCACAACGCCAGGTCCCATACTGGCACTAAGGCTGGACAG
CCCGGGTCCTCCAGGTCCTCCTCCCAGCGATCCCAGACTAGTGGCTCCCA
TTACACCCGCTGCTCCGCCCAAGCTCGCTCCTCCGGGCAGCAAGCCCACG
CCCGGTTCGGGGCTCTGGTTTTTCTTTTTACGCTTTTTCTCCTTTTTGCG
CTTCTTGCGCTCCTTGTCGTCCTCATGGCGTTTCTGCTTCTTGTGCTTTT
TCTCGTAAGTCTCCAGGCCGGCCGAGTCGAGCAGCGTGGATTCCTGTCCC
GTGGTCACCCCGTCTTTGTGTTTTTGCTTTTTGTGTTTGTTTTTGTGTTT
ACGCGCAGGTGTGACATATGTGGTACGATACTGTTCCGGCAGCGGTCCGG
GATGCAAGCGGAATCCGGCCAGCTGCACGGGAGTCAGCGGAAGAAGCTCC
TTTCCACCAATGGGCGGCTTTTCGATCACGCTCCGCAGCGTGCTATTCTC
CACGGGATGCGTGATGAGGTCGTTAATGCCGGGGATGTTCTGCAGAAACG
AGGCCAGCGACTCCTTGAACTTCTTCTCCTTGAACTTGGTGAGTGTGTGG
TGCAGTCCGTACTCGGTCATGAGATCCTTGTCGCCGGGTAGTTCTGCCTT
GGCGGGTGGGTTCTTCATGGAGTAAATGGGCCCCGTGT
BS09836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5546-PA | 1014 | MED19-RA | 143..1014 | 888..17 | 4210 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 453..1324 | 888..17 | 4270 | 99.3 | Minus |
MED19-RA | 1763 | CG5546-RA | 453..1324 | 888..17 | 4270 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17844254..17844715 | 17..478 | 2310 | 100 | Plus |
3L | 28110227 | 3L | 17845754..17846049 | 593..888 | 1390 | 98 | Plus |
3L | 28110227 | 3L | 17844780..17844895 | 478..593 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:52:32 has no hits.
BS09836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:16 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-PA | 143..1014 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:14 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5546-PA | 143..1014 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:04 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 453..1326 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:27 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 453..1326 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:27 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17844252..17844714 | 13..477 | 99 | <- | Plus |
3L | 17844780..17844894 | 478..592 | 100 | <- | Plus |
3L | 17845754..17846049 | 593..888 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:04 Download gff for
BS09836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837352..17837814 | 13..477 | 99 | <- | Plus |
arm_3L | 17837880..17837994 | 478..592 | 100 | <- | Plus |
arm_3L | 17838854..17839149 | 593..888 | 97 | | Plus |
BS09836.5prime Sequence
965 bp (865 high quality bases) assembled on 2006-04-19
> BS09836.5prime
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAAATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAATG
GCGGTCCAGGTGGGC
BS09836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5546-PA | 1014 | MED19-RA | 1..947 | 17..963 | 4685 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 311..1257 | 17..963 | 4705 | 99.8 | Plus |
MED19-RA | 1763 | CG5546-RA | 311..1257 | 17..963 | 4705 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17845754..17846191 | 454..17 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 17844321..17844715 | 963..569 | 1945 | 99.5 | Minus |
3L | 28110227 | 3L | 17844780..17844895 | 569..454 | 580 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 12:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1066..1107 | 865..906 | 147 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2393 | 865..907 | 125 | 76.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1087..1128 | 865..906 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6530..6571 | 863..907 | 118 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6772 | 871..907 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6793 | 871..907 | 113 | 78.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1099..1140 | 865..906 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2371 | 865..906 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6886 | 866..907 | 111 | 73.8 | Plus |
BS09836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:17 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:15 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5546-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:20 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1258 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:59 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1258 | 17..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:59 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17844320..17844714 | 570..965 | 99 | <- | Minus |
3L | 17844780..17844894 | 455..569 | 100 | <- | Minus |
3L | 17845754..17846191 | 17..454 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:20 Download gff for
BS09836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837420..17837814 | 570..965 | 99 | <- | Minus |
arm_3L | 17837880..17837994 | 455..569 | 100 | <- | Minus |
arm_3L | 17838854..17839291 | 17..454 | 100 | | Minus |
BS09836.complete Sequence
1046 bp (1046 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636487
> BS09836.complete
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAGATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAGTG
GCGGTCCAGGTGGCGGCGGCGGAGGAGGAGGTGGTGGCGGGGGCGGCGTC
GGTGGGAGTCTGCTTATGTCGCAGTTTTAGAAGCTTTCTAGACCAT
BS09836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1014 | CG5546-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
MED19-RA | 1014 | CG5546-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 311..1324 | 17..1030 | 5070 | 100 | Plus |
MED19-RA | 1763 | CG5546-RA | 311..1324 | 17..1030 | 5070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17844254..17844715 | 1030..569 | 2310 | 100 | Minus |
3L | 28110227 | 3L | 17845754..17846191 | 454..17 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 17844780..17844895 | 569..454 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:08:19 has no hits.
BS09836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:13 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:07 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 310..1325 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:21 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1324 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:14 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 310..1325 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:11 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1324 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:11 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17844780..17844894 | 455..569 | 100 | <- | Minus |
3L | 17845754..17846191 | 17..454 | 100 | | Minus |
3L | 17844254..17844714 | 570..1030 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:21 Download gff for
BS09836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837880..17837994 | 455..569 | 100 | <- | Minus |
arm_3L | 17838854..17839291 | 17..454 | 100 | | Minus |
arm_3L | 17837354..17837814 | 570..1030 | 100 | <- | Minus |
BS09836.pep Sequence
Translation from 16 to 1029
> BS09836.pep
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*
BS09836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-PB | 337 | CG5546-PB | 1..337 | 1..337 | 1764 | 100 | Plus |
MED19-PA | 337 | CG5546-PA | 1..337 | 1..337 | 1764 | 100 | Plus |
Tomosyn-PL | 1387 | CG17762-PL | 652..849 | 149..331 | 154 | 24.5 | Plus |
Tomosyn-PK | 1387 | CG17762-PK | 652..849 | 149..331 | 154 | 24.5 | Plus |