Clone BS09836 Report

Search the DGRC for BS09836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptMED19-RA
Protein status:BS09836.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09836.3prime Sequence

888 bp (793 high quality bases) assembled on 2006-04-19

> BS09836.3prime
ATGGTCTAGAAAGCTTCTAAAACTGCGACATAAGCAGACTCCCACCGACG
CCGCCCCCGCCACCACCTCCTCCTCCGCCGCCGCCACCTGGACCGCCACT
AGTGCCCAGCACAGATCCCAGCAGACCGCCACTTGACATCTGCTGTTGCT
GCATGGGCATCTGCTGTTGCTGCTGCATCTGCATCGATGAGGAGAAGCTA
TTCATGTTCCCCACAACGCCAGGTCCCATACTGGCACTAAGGCTGGACAG
CCCGGGTCCTCCAGGTCCTCCTCCCAGCGATCCCAGACTAGTGGCTCCCA
TTACACCCGCTGCTCCGCCCAAGCTCGCTCCTCCGGGCAGCAAGCCCACG
CCCGGTTCGGGGCTCTGGTTTTTCTTTTTACGCTTTTTCTCCTTTTTGCG
CTTCTTGCGCTCCTTGTCGTCCTCATGGCGTTTCTGCTTCTTGTGCTTTT
TCTCGTAAGTCTCCAGGCCGGCCGAGTCGAGCAGCGTGGATTCCTGTCCC
GTGGTCACCCCGTCTTTGTGTTTTTGCTTTTTGTGTTTGTTTTTGTGTTT
ACGCGCAGGTGTGACATATGTGGTACGATACTGTTCCGGCAGCGGTCCGG
GATGCAAGCGGAATCCGGCCAGCTGCACGGGAGTCAGCGGAAGAAGCTCC
TTTCCACCAATGGGCGGCTTTTCGATCACGCTCCGCAGCGTGCTATTCTC
CACGGGATGCGTGATGAGGTCGTTAATGCCGGGGATGTTCTGCAGAAACG
AGGCCAGCGACTCCTTGAACTTCTTCTCCTTGAACTTGGTGAGTGTGTGG
TGCAGTCCGTACTCGGTCATGAGATCCTTGTCGCCGGGTAGTTCTGCCTT
GGCGGGTGGGTTCTTCATGGAGTAAATGGGCCCCGTGT

BS09836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5546-PA 1014 MED19-RA 143..1014 888..17 4210 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 453..1324 888..17 4270 99.3 Minus
MED19-RA 1763 CG5546-RA 453..1324 888..17 4270 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17844254..17844715 17..478 2310 100 Plus
3L 28110227 3L 17845754..17846049 593..888 1390 98 Plus
3L 28110227 3L 17844780..17844895 478..593 580 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:52:32 has no hits.

BS09836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:16 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-PA 143..1014 17..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:14 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5546-PA 143..1014 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:04 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 453..1326 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:27 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 453..1326 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:27 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17844252..17844714 13..477 99 <- Plus
3L 17844780..17844894 478..592 100 <- Plus
3L 17845754..17846049 593..888 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:04 Download gff for BS09836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837352..17837814 13..477 99 <- Plus
arm_3L 17837880..17837994 478..592 100 <- Plus
arm_3L 17838854..17839149 593..888 97   Plus

BS09836.5prime Sequence

965 bp (865 high quality bases) assembled on 2006-04-19

> BS09836.5prime
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAAATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAATG
GCGGTCCAGGTGGGC

BS09836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5546-PA 1014 MED19-RA 1..947 17..963 4685 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 311..1257 17..963 4705 99.8 Plus
MED19-RA 1763 CG5546-RA 311..1257 17..963 4705 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17845754..17846191 454..17 2190 100 Minus
3L 28110227 3L 17844321..17844715 963..569 1945 99.5 Minus
3L 28110227 3L 17844780..17844895 569..454 580 100 Minus
Blast to na_te.dros performed 2015-02-02 12:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1066..1107 865..906 147 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2393 865..907 125 76.7 Plus
roo 9092 roo DM_ROO 9092bp 1087..1128 865..906 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6530..6571 863..907 118 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6772 871..907 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6793 871..907 113 78.4 Plus
roo 9092 roo DM_ROO 9092bp 1099..1140 865..906 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2371 865..906 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6886 866..907 111 73.8 Plus

BS09836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:17 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:15 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5546-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:20 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1258 17..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:59 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1258 17..965 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:59 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17844320..17844714 570..965 99 <- Minus
3L 17844780..17844894 455..569 100 <- Minus
3L 17845754..17846191 17..454 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:20 Download gff for BS09836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837420..17837814 570..965 99 <- Minus
arm_3L 17837880..17837994 455..569 100 <- Minus
arm_3L 17838854..17839291 17..454 100   Minus

BS09836.complete Sequence

1046 bp (1046 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636487

> BS09836.complete
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAGATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAGTG
GCGGTCCAGGTGGCGGCGGCGGAGGAGGAGGTGGTGGCGGGGGCGGCGTC
GGTGGGAGTCTGCTTATGTCGCAGTTTTAGAAGCTTTCTAGACCAT

BS09836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1014 CG5546-PB 1..1014 17..1030 5070 100 Plus
MED19-RA 1014 CG5546-PA 1..1014 17..1030 5070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 311..1324 17..1030 5070 100 Plus
MED19-RA 1763 CG5546-RA 311..1324 17..1030 5070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17844254..17844715 1030..569 2310 100 Minus
3L 28110227 3L 17845754..17846191 454..17 2190 100 Minus
3L 28110227 3L 17844780..17844895 569..454 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:08:19 has no hits.

BS09836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:13 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:07 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 310..1325 17..1034 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:21 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1324 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:14 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 310..1325 17..1034 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:11 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1324 17..1030 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:11 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17844780..17844894 455..569 100 <- Minus
3L 17845754..17846191 17..454 100   Minus
3L 17844254..17844714 570..1030 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:21 Download gff for BS09836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837880..17837994 455..569 100 <- Minus
arm_3L 17838854..17839291 17..454 100   Minus
arm_3L 17837354..17837814 570..1030 100 <- Minus

BS09836.pep Sequence

Translation from 16 to 1029

> BS09836.pep
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*

BS09836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-PB 337 CG5546-PB 1..337 1..337 1764 100 Plus
MED19-PA 337 CG5546-PA 1..337 1..337 1764 100 Plus
Tomosyn-PL 1387 CG17762-PL 652..849 149..331 154 24.5 Plus
Tomosyn-PK 1387 CG17762-PK 652..849 149..331 154 24.5 Plus