Clone Sequence Records
BS09841.3prime Sequence
795 bp (794 high quality bases) assembled on 2006-04-19
> BS09841.3prime
ATGGTCTAGAAAGCTTCTACTCCTCGTGCTGCTCCTCCTGCCGATCCTTC
TGGCGCTTACGGCAGTTGTCGAAGGTGTGCCCCCGGAAACTGCAGTAGGT
GCAGCGGGTGGTGCGCTTGGAGCCACGGGTGTTCTTTGCTGTGGCAAGCT
GTTCCTCGTCCTCCTGGTTGTTGTGCTCGATGATGCGGCCCTGTTCCAGG
AGATCCTTGAAGGTATGGACACTGTGGCGGGAGATGTGCTTGCGGTACTT
GATGTTCAGCAGACCGAACAGAAGATCCAGTTCCGTTTCCTCGTCGTGGC
GACCGCTGGGCAGCTGGGCCAGCAGCGCTCGCTTCTGGATGACGAAGGTG
TCAATGGGGTCATGGTCGTCCTGCTTGTTTTGGAAGAATTCCATGTAGAT
CTGGTAGGCGGGCTTGGTGGGCGAGAAGTGTTCGCGGATGAGAGCGATGG
CTTCCTTCCACGTGGTGGCCTCCTTGCGGACGCCTTGCCACCAGGTGCTG
GCCATACCGTAGAACAGCAGCGAGATGCCCTTCAGGGCGTTCTCGTCGCT
GATACCTTCTACATCCTTGTATGTCTCGATGTTGCCGATGAACTCCTCGA
CCACGTCGTGGTCGCGGGTTCCGCCGAAGCTGTGTGTGCAAGCGGAGAAG
TTGCCTTTGCCTCTGCTGGCGTCTGCTCCTCCGGCTGCTGCTGCACTTCC
GGCGGCGCCCACGGCGGCCGCTCTTACAGCTTCGATCAGCTCGCGGAGCT
GCTCGTTGGTCATCTGAGTAAGCTGGGCCATGTCGACTGATAACT
BS09841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12505-PA | 765 | CG12505-RA | 1..765 | 781..17 | 3800 | 99.8 | Minus |
CG10102-PA | 549 | CG10102-RA | 86..549 | 480..17 | 2295 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-RA | 2371 | CG12505-RA | 98..862 | 781..17 | 3810 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14359436..14360200 | 17..781 | 3810 | 99.9 | Plus |
2R | 25286936 | 2R | 14361304..14361767 | 17..480 | 2305 | 99.8 | Plus |
2R | 25286936 | 2R | 14362346..14362506 | 436..276 | 190 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-03 15:50:49 has no hits.
BS09841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:24 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12505-PA | 1..765 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:25 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12505-PA | 1..765 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:21:46 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 90..864 | 13..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:49:26 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 90..864 | 13..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:49:26 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14359434..14360208 | 13..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:21:46 Download gff for
BS09841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10246939..10247713 | 13..789 | 99 | | Plus |
BS09841.5prime Sequence
795 bp (747 high quality bases) assembled on 2006-04-19
> BS09841.5prime
GAAGTTATCAGTCGACATGGCCCAGCTTACTCAGATGACCAACGAGCAGC
TCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCGGA
AGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAACTT
CTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGTCG
AGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCAGC
GACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCCAG
CACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGCCA
TCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGATC
TACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGACAC
CTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCGCC
ACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCAAG
TACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTCCT
GGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACAGC
TTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCACC
TACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAGAA
GGATCGGCAGGAGGAGCAGCACGAGGAGTAGAAGCTTTCTAGACC
BS09841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12505-PA | 765 | CG12505-RA | 1..765 | 17..781 | 3800 | 99.8 | Plus |
CG10102-PA | 549 | CG10102-RA | 86..549 | 318..781 | 2295 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-RA | 2371 | CG12505-RA | 98..862 | 17..781 | 3810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14359436..14360200 | 781..17 | 3810 | 99.9 | Minus |
2R | 25286936 | 2R | 14361304..14361767 | 781..318 | 2305 | 99.8 | Minus |
2R | 25286936 | 2R | 14362346..14362506 | 362..522 | 190 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:26:47 has no hits.
BS09841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:25 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12505-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:26 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12505-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:56 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 90..864 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:45:03 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 90..864 | 9..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:45:03 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14359434..14360208 | 9..785 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:56 Download gff for
BS09841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10246939..10247713 | 9..785 | 99 | | Minus |
BS09841.complete Sequence
797 bp assembled on 2009-02-12
> BS09841.complete
GAAGTTATCAGTCGACATGGCCCAGCTTACTCAGATGACCAACGAGCAGC
TCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCGGA
AGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAACTT
CTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGTCG
AGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCAGC
GACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCCAG
CACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGCCA
TCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGATC
TACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGACAC
CTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCGCC
ACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCAAG
TACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTCCT
GGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACAGC
TTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCACC
TACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAGAA
GGATCGGCAGGAGGAGCAGCACGAGGAGTAGAAGCTTTCTAGACCAT
BS09841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-RA | 765 | CG12505-PA | 1..765 | 17..781 | 3810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-RA | 2371 | CG12505-RA | 98..862 | 17..781 | 3810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14359436..14360200 | 781..17 | 3810 | 99.9 | Minus |
2R | 25286936 | 2R | 14361304..14361767 | 781..318 | 2305 | 99.8 | Minus |
2R | 25286936 | 2R | 14362346..14362506 | 362..522 | 190 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:31:44 has no hits.
BS09841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:24 Download gff for
BS09841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 95..859 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:33 Download gff for
BS09841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 98..862 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:31 Download gff for
BS09841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 98..862 | 17..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:31 Download gff for
BS09841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14359436..14360200 | 17..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:33 Download gff for
BS09841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10246941..10247705 | 17..781 | 99 | | Minus |
BS09841.pep Sequence
Translation from 16 to 780
> BS09841.pep
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*
BS09841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-PA | 254 | CG12505-PA | 1..254 | 1..254 | 1335 | 100 | Plus |
Arc2-PA | 193 | CG13941-PA | 1..189 | 4..202 | 568 | 53.3 | Plus |