Clone BS09841 Report

Search the DGRC for BS09841

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptArc1-RA
Protein status:BS09841.pep: full length peptide match
Sequenced Size:797

Clone Sequence Records

BS09841.3prime Sequence

795 bp (794 high quality bases) assembled on 2006-04-19

> BS09841.3prime
ATGGTCTAGAAAGCTTCTACTCCTCGTGCTGCTCCTCCTGCCGATCCTTC
TGGCGCTTACGGCAGTTGTCGAAGGTGTGCCCCCGGAAACTGCAGTAGGT
GCAGCGGGTGGTGCGCTTGGAGCCACGGGTGTTCTTTGCTGTGGCAAGCT
GTTCCTCGTCCTCCTGGTTGTTGTGCTCGATGATGCGGCCCTGTTCCAGG
AGATCCTTGAAGGTATGGACACTGTGGCGGGAGATGTGCTTGCGGTACTT
GATGTTCAGCAGACCGAACAGAAGATCCAGTTCCGTTTCCTCGTCGTGGC
GACCGCTGGGCAGCTGGGCCAGCAGCGCTCGCTTCTGGATGACGAAGGTG
TCAATGGGGTCATGGTCGTCCTGCTTGTTTTGGAAGAATTCCATGTAGAT
CTGGTAGGCGGGCTTGGTGGGCGAGAAGTGTTCGCGGATGAGAGCGATGG
CTTCCTTCCACGTGGTGGCCTCCTTGCGGACGCCTTGCCACCAGGTGCTG
GCCATACCGTAGAACAGCAGCGAGATGCCCTTCAGGGCGTTCTCGTCGCT
GATACCTTCTACATCCTTGTATGTCTCGATGTTGCCGATGAACTCCTCGA
CCACGTCGTGGTCGCGGGTTCCGCCGAAGCTGTGTGTGCAAGCGGAGAAG
TTGCCTTTGCCTCTGCTGGCGTCTGCTCCTCCGGCTGCTGCTGCACTTCC
GGCGGCGCCCACGGCGGCCGCTCTTACAGCTTCGATCAGCTCGCGGAGCT
GCTCGTTGGTCATCTGAGTAAGCTGGGCCATGTCGACTGATAACT

BS09841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12505-PA 765 CG12505-RA 1..765 781..17 3800 99.8 Minus
CG10102-PA 549 CG10102-RA 86..549 480..17 2295 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-RA 2371 CG12505-RA 98..862 781..17 3810 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14359436..14360200 17..781 3810 99.9 Plus
2R 25286936 2R 14361304..14361767 17..480 2305 99.8 Plus
2R 25286936 2R 14362346..14362506 436..276 190 74.5 Minus
Blast to na_te.dros performed on 2015-02-03 15:50:49 has no hits.

BS09841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:24 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12505-PA 1..765 17..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:25 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12505-PA 1..765 17..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:21:46 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 90..864 13..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:49:26 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 90..864 13..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:49:26 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14359434..14360208 13..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:21:46 Download gff for BS09841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10246939..10247713 13..789 99   Plus

BS09841.5prime Sequence

795 bp (747 high quality bases) assembled on 2006-04-19

> BS09841.5prime
GAAGTTATCAGTCGACATGGCCCAGCTTACTCAGATGACCAACGAGCAGC
TCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCGGA
AGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAACTT
CTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGTCG
AGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCAGC
GACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCCAG
CACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGCCA
TCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGATC
TACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGACAC
CTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCGCC
ACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCAAG
TACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTCCT
GGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACAGC
TTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCACC
TACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAGAA
GGATCGGCAGGAGGAGCAGCACGAGGAGTAGAAGCTTTCTAGACC

BS09841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12505-PA 765 CG12505-RA 1..765 17..781 3800 99.8 Plus
CG10102-PA 549 CG10102-RA 86..549 318..781 2295 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-RA 2371 CG12505-RA 98..862 17..781 3810 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14359436..14360200 781..17 3810 99.9 Minus
2R 25286936 2R 14361304..14361767 781..318 2305 99.8 Minus
2R 25286936 2R 14362346..14362506 362..522 190 74.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:26:47 has no hits.

BS09841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:25 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12505-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:26 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12505-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:56 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 90..864 9..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:45:03 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 90..864 9..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:45:03 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14359434..14360208 9..785 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:56 Download gff for BS09841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10246939..10247713 9..785 99   Minus

BS09841.complete Sequence

797 bp assembled on 2009-02-12

> BS09841.complete
GAAGTTATCAGTCGACATGGCCCAGCTTACTCAGATGACCAACGAGCAGC
TCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCGGA
AGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAACTT
CTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGTCG
AGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCAGC
GACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCCAG
CACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGCCA
TCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGATC
TACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGACAC
CTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCGCC
ACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCAAG
TACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTCCT
GGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACAGC
TTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCACC
TACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAGAA
GGATCGGCAGGAGGAGCAGCACGAGGAGTAGAAGCTTTCTAGACCAT

BS09841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-RA 765 CG12505-PA 1..765 17..781 3810 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-RA 2371 CG12505-RA 98..862 17..781 3810 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14359436..14360200 781..17 3810 99.9 Minus
2R 25286936 2R 14361304..14361767 781..318 2305 99.8 Minus
2R 25286936 2R 14362346..14362506 362..522 190 74.5 Plus
Blast to na_te.dros performed on 2014-11-27 13:31:44 has no hits.

BS09841.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:24 Download gff for BS09841.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 95..859 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:33 Download gff for BS09841.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 98..862 17..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:31 Download gff for BS09841.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 98..862 17..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:31 Download gff for BS09841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14359436..14360200 17..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:33 Download gff for BS09841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10246941..10247705 17..781 99   Minus

BS09841.pep Sequence

Translation from 16 to 780

> BS09841.pep
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*

BS09841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-PA 254 CG12505-PA 1..254 1..254 1335 100 Plus
Arc2-PA 193 CG13941-PA 1..189 4..202 568 53.3 Plus