Clone Sequence Records
BS09849.3prime Sequence
826 bp (825 high quality bases) assembled on 2006-04-19
> BS09849.3prime
ATGGTCTAGAAAGCTTTCACTGGCTAGCTGGCGGTGCTGTGGCATTATTA
AACTGGAAAGTCGGATACCGAGGTGCGAAGGCTCCGTCGCCGATCATCTG
CGTATGCTCGGAGTCGTCCCTACCGGCGATCGTTGGTGCCCGGTACTGTG
TCTCCACAAACTGCGGTGGCGGTATATTAGGATACAGTGAACCACCACCA
GTACTGTCAGCCACGTTCCAGCCTAGAGCACCACCCACGCCATCGCCGCC
AGGAGGGCTCGCCGGGCTCACTGGCTGTGTGGGCGCCAGCGATGGATCCT
CGGACTGAACCGCCGACGGAGCATCCGTAAATTGAGTAGGTGGCCGTACG
CCAGCCAATGGAATAGTGCCCAAGGTGATTGGCACCTTGCCAGTGAGATT
GCGGTGCGGACCGCTCACCTCGCACTCCACATGCAGGTCGTAGTCCAAAG
CGATAATCCCGCAGTTGAGGAGGTTGGTCGGTGGCAGCGCCGGAATCTCC
ATTTGTTGCGTAAACGTGCGAGACTCGCCGCCATTGACTGGGCCAACACT
TAAGTTGGCTATGATCACCTTGGACTCGCGCTTCTCGCTCCGTGGCTGGT
TTGTGTGGAAGGTGACCAGCTTACGCAGTTCAAACTTCACTGCCGTAAGA
TTTACGTTGCTGGTGTTGTCCACCTCGCAGGTGATGGGCAGCACCTGCCC
CGAAACGAATCCTGTTTGCGGGATGTTCGTGATGACAGCCAGCGGTCCTG
AGCGACAGCAAAAACAGCAGAATGACTTTTCTAGCTCGAGCTTGAATGGC
TCCTTGACTCGAGGATTGAGATTTAG
BS09849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 1269 | CG1105-RA | 460..1269 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 558..1367 | 826..17 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7064878..7065532 | 172..826 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 7064615..7064769 | 17..171 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:35:31 has no hits.
BS09849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:43 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 460..1269 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:47 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 460..1269 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:32 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 558..1367 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:44 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 558..1367 | 17..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:44 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7064615..7064769 | 17..171 | 100 | <- | Plus |
3R | 7064878..7065532 | 172..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:32 Download gff for
BS09849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2890337..2890491 | 17..171 | 100 | <- | Plus |
arm_3R | 2890600..2891254 | 172..826 | 100 | | Plus |
BS09849.5prime Sequence
867 bp (727 high quality bases) assembled on 2006-04-19
> BS09849.5prime
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGGGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCT
BS09849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 1269 | CG1105-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 97..949 | 15..867 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7065141..7065720 | 867..288 | 2885 | 99.8 | Minus |
3R | 32079331 | 3R | 7066141..7066299 | 288..130 | 795 | 100 | Minus |
3R | 32079331 | 3R | 7066921..7067040 | 134..15 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:12:42 has no hits.
BS09849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:44 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:49 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:31:24 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 90..949 | 7..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:02 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 90..949 | 7..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:02 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7065141..7065720 | 288..867 | 99 | <- | Minus |
3R | 7066142..7066297 | 132..287 | 100 | <- | Minus |
3R | 7066924..7067047 | 7..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:31:24 Download gff for
BS09849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2890863..2891442 | 288..867 | 99 | <- | Minus |
arm_3R | 2891864..2892019 | 132..287 | 100 | <- | Minus |
arm_3R | 2892646..2892769 | 7..131 | 96 | | Minus |
BS09849.complete Sequence
1301 bp (1301 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636488
> BS09849.complete
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCG
CAATCTCACTGGCAAGGTGCCAATCACCTTGGGCACTATTCCATTGGCTG
GCGTACGGCCACCTACTCAATTTACGGATGCTCCGTCGGCGGTTCAGTCC
GAGGATCCATCGCTGGCGCCCACACAGCCAGTGAGCCCGGCGAGCCCTCC
TGGCGGCGATGGCGTGGGTGGTGCTCTAGGCTGGAACGTGGCTGACAGTA
CTGGTGGTGGTTCACTGTATCCTAATATACCGCCACCGCAGTTTGTGGAG
ACACAGTACCGGGCACCAACGATCGCCGGTAGGGACGACTCCGAGCATAC
GCAGATGATCGGCGACGGAGCCTTCGCACCTCGGTATCCGACTTTCCAGT
TTAATAATGCCACAGCACCGCCAGCTAGCCAGTGAAAGCTTTCTAGACCA
T
BS09849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1269 | CG1105-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 97..1367 | 15..1285 | 6355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7064878..7065720 | 1130..288 | 4215 | 100 | Minus |
3R | 32079331 | 3R | 7066141..7066299 | 288..130 | 795 | 100 | Minus |
3R | 32079331 | 3R | 7064615..7064769 | 1285..1131 | 775 | 100 | Minus |
3R | 32079331 | 3R | 7066921..7067040 | 134..15 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:20:36 has no hits.
BS09849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:15 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:09 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 86..1363 | 7..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:27 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 99..1366 | 17..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:15 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 86..1363 | 7..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:11 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 99..1366 | 17..1284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:11 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7064616..7064769 | 1131..1284 | 100 | <- | Minus |
3R | 7064878..7065720 | 288..1130 | 100 | <- | Minus |
3R | 7066142..7066297 | 132..287 | 100 | <- | Minus |
3R | 7066924..7067038 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:27 Download gff for
BS09849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2890600..2891442 | 288..1130 | 100 | <- | Minus |
arm_3R | 2891864..2892019 | 132..287 | 100 | <- | Minus |
arm_3R | 2890338..2890491 | 1131..1284 | 100 | <- | Minus |
arm_3R | 2892646..2892760 | 17..131 | 100 | | Minus |
BS09849.pep Sequence
Translation from 16 to 1284
> BS09849.pep
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQ*
BS09849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 422 | CG1105-PA | 1..422 | 1..422 | 2261 | 100 | Plus |
CG18745-PA | 433 | CG18745-PA | 5..404 | 6..419 | 610 | 34.5 | Plus |
CG18746-PA | 438 | CG18746-PA | 4..368 | 6..384 | 539 | 31.3 | Plus |
CG18748-PC | 409 | CG18748-PC | 11..400 | 11..422 | 521 | 31.2 | Plus |
CG18747-PB | 418 | CG18747-PB | 5..399 | 6..416 | 490 | 31.4 | Plus |