Clone BS09849 Report

Search the DGRC for BS09849

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1105-RA
Protein status:BS09849.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09849.3prime Sequence

826 bp (825 high quality bases) assembled on 2006-04-19

> BS09849.3prime
ATGGTCTAGAAAGCTTTCACTGGCTAGCTGGCGGTGCTGTGGCATTATTA
AACTGGAAAGTCGGATACCGAGGTGCGAAGGCTCCGTCGCCGATCATCTG
CGTATGCTCGGAGTCGTCCCTACCGGCGATCGTTGGTGCCCGGTACTGTG
TCTCCACAAACTGCGGTGGCGGTATATTAGGATACAGTGAACCACCACCA
GTACTGTCAGCCACGTTCCAGCCTAGAGCACCACCCACGCCATCGCCGCC
AGGAGGGCTCGCCGGGCTCACTGGCTGTGTGGGCGCCAGCGATGGATCCT
CGGACTGAACCGCCGACGGAGCATCCGTAAATTGAGTAGGTGGCCGTACG
CCAGCCAATGGAATAGTGCCCAAGGTGATTGGCACCTTGCCAGTGAGATT
GCGGTGCGGACCGCTCACCTCGCACTCCACATGCAGGTCGTAGTCCAAAG
CGATAATCCCGCAGTTGAGGAGGTTGGTCGGTGGCAGCGCCGGAATCTCC
ATTTGTTGCGTAAACGTGCGAGACTCGCCGCCATTGACTGGGCCAACACT
TAAGTTGGCTATGATCACCTTGGACTCGCGCTTCTCGCTCCGTGGCTGGT
TTGTGTGGAAGGTGACCAGCTTACGCAGTTCAAACTTCACTGCCGTAAGA
TTTACGTTGCTGGTGTTGTCCACCTCGCAGGTGATGGGCAGCACCTGCCC
CGAAACGAATCCTGTTTGCGGGATGTTCGTGATGACAGCCAGCGGTCCTG
AGCGACAGCAAAAACAGCAGAATGACTTTTCTAGCTCGAGCTTGAATGGC
TCCTTGACTCGAGGATTGAGATTTAG

BS09849.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 1269 CG1105-RA 460..1269 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 558..1367 826..17 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7064878..7065532 172..826 3275 100 Plus
3R 32079331 3R 7064615..7064769 17..171 775 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:35:31 has no hits.

BS09849.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:43 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 460..1269 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:47 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 460..1269 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:32 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 558..1367 17..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:44 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 558..1367 17..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:44 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7064615..7064769 17..171 100 <- Plus
3R 7064878..7065532 172..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:32 Download gff for BS09849.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2890337..2890491 17..171 100 <- Plus
arm_3R 2890600..2891254 172..826 100   Plus

BS09849.5prime Sequence

867 bp (727 high quality bases) assembled on 2006-04-19

> BS09849.5prime
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGGGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCT

BS09849.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 1269 CG1105-RA 1..851 17..867 4230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 97..949 15..867 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7065141..7065720 867..288 2885 99.8 Minus
3R 32079331 3R 7066141..7066299 288..130 795 100 Minus
3R 32079331 3R 7066921..7067040 134..15 600 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:12:42 has no hits.

BS09849.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:44 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:49 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:31:24 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 90..949 7..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:02 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 90..949 7..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:02 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7065141..7065720 288..867 99 <- Minus
3R 7066142..7066297 132..287 100 <- Minus
3R 7066924..7067047 7..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:31:24 Download gff for BS09849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2890863..2891442 288..867 99 <- Minus
arm_3R 2891864..2892019 132..287 100 <- Minus
arm_3R 2892646..2892769 7..131 96   Minus

BS09849.complete Sequence

1301 bp (1301 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636488

> BS09849.complete
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCG
CAATCTCACTGGCAAGGTGCCAATCACCTTGGGCACTATTCCATTGGCTG
GCGTACGGCCACCTACTCAATTTACGGATGCTCCGTCGGCGGTTCAGTCC
GAGGATCCATCGCTGGCGCCCACACAGCCAGTGAGCCCGGCGAGCCCTCC
TGGCGGCGATGGCGTGGGTGGTGCTCTAGGCTGGAACGTGGCTGACAGTA
CTGGTGGTGGTTCACTGTATCCTAATATACCGCCACCGCAGTTTGTGGAG
ACACAGTACCGGGCACCAACGATCGCCGGTAGGGACGACTCCGAGCATAC
GCAGATGATCGGCGACGGAGCCTTCGCACCTCGGTATCCGACTTTCCAGT
TTAATAATGCCACAGCACCGCCAGCTAGCCAGTGAAAGCTTTCTAGACCA
T

BS09849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1269 CG1105-PA 1..1269 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 97..1367 15..1285 6355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7064878..7065720 1130..288 4215 100 Minus
3R 32079331 3R 7066141..7066299 288..130 795 100 Minus
3R 32079331 3R 7064615..7064769 1285..1131 775 100 Minus
3R 32079331 3R 7066921..7067040 134..15 600 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:20:36 has no hits.

BS09849.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:15 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:09 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 86..1363 7..1285 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:27 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 99..1366 17..1284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:15 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 86..1363 7..1285 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:11 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 99..1366 17..1284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:11 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7064616..7064769 1131..1284 100 <- Minus
3R 7064878..7065720 288..1130 100 <- Minus
3R 7066142..7066297 132..287 100 <- Minus
3R 7066924..7067038 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:27 Download gff for BS09849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2890600..2891442 288..1130 100 <- Minus
arm_3R 2891864..2892019 132..287 100 <- Minus
arm_3R 2890338..2890491 1131..1284 100 <- Minus
arm_3R 2892646..2892760 17..131 100   Minus

BS09849.pep Sequence

Translation from 16 to 1284

> BS09849.pep
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQ*

BS09849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 422 CG1105-PA 1..422 1..422 2261 100 Plus
CG18745-PA 433 CG18745-PA 5..404 6..419 610 34.5 Plus
CG18746-PA 438 CG18746-PA 4..368 6..384 539 31.3 Plus
CG18748-PC 409 CG18748-PC 11..400 11..422 521 31.2 Plus
CG18747-PB 418 CG18747-PB 5..399 6..416 490 31.4 Plus