Clone Sequence Records
BS09852.3prime Sequence
866 bp (856 high quality bases) assembled on 2006-04-19
> BS09852.3prime
ATGGTCTAGAAAGCTTTCAGTTCTCGTTCTGCAGTTTCACCATCTTTTCG
CGTACGTTCTTTAGCAGATCCTTCATTTGTTCGTACTTTCCCGTGGAGTC
GGGCAGGTTTTCAAAGTTGATCACATCGCTGACGCCCACCTTAAAGTTGC
TGCCCACAGGCAGTCTGTCGTAAACGGAGAATTTCAGCAAAGGCGTGCCC
TCATAAGACGCCTTAAAGGGAGTCGAGGGTGCTGATCGGGACTGCTCATT
ATTTCCGGACTCGGCAGCAGATGGACCAACCTCCGTCTCAGACGTGTCAT
CCAGGTCGGTTGGTGATTTCGATTCATTCGCTGTCGTGTTATGCGACGCA
TTAACATCCAGCTCTTGGAGGAGCTCCTCCTGCTGGGCCTTCAAATCTTC
CAGGCTTGGAGATGGCGAGCGCGCTGTCAGTTCGCCATCTTCGCACTCTT
CGGGCGGAGGTGGTTGCGGCGGGGGCACTGATGGTGGCAGTGGAGGGTCC
TCTGTTTCCTCTTCTAGTTCCATGTCGTAGTCATCGAAGCTGGTCAGCAA
CTCGCTGGGAGCGGGAACACGGTCGTGTGGAGCAGGCAAATCCACTAGCT
TCTTGCGCTTGTAACCGTTGATCACGTTTTCGCCCAACGATTTAATGAAG
TTCTCCTTGGACTGGCTCTCTTGGAATGGCGGTACATTGTGGTGCTTAAA
ATCGTCGAAACAATTGGCCTTAGGCTGGACGTTGAAGCCGGGATACTCCA
CTATTTTGTTGACGTCGTATTTAAAGGTTTCGGACTCTCCCTCTTCCTCG
TCGGATTTTGTAACCTCCGAGCCATCTGCATTAAACAGAGCTATGCCCGA
GCTCTGCACCTTTGCC
BS09852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-PA | 1662 | CG4622-RA | 813..1662 | 866..17 | 4250 | 100 | Minus |
CG4622-PB | 1482 | CG4622-RB | 813..1472 | 866..207 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-RC | 2762 | CG4622-RC | 1786..2635 | 866..17 | 4250 | 100 | Minus |
CG4622-RA | 1892 | CG4622-RA | 916..1765 | 866..17 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24533501..24534187 | 17..703 | 3435 | 100 | Plus |
2R | 25286936 | 2R | 24534243..24534363 | 703..823 | 605 | 100 | Plus |
2R | 25286936 | 2R | 24534414..24534457 | 823..866 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:31:41 has no hits.
BS09852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:50 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-PA | 813..1662 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:55 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-PA | 813..1662 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:24:54 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 916..1765 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:16:21 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 916..1765 | 17..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:16:21 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24534415..24534457 | 824..866 | 100 | | Plus |
2R | 24533501..24534187 | 17..703 | 100 | <- | Plus |
2R | 24534244..24534363 | 704..823 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:24:54 Download gff for
BS09852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20421938..20421980 | 824..866 | 100 | | Plus |
arm_2R | 20421024..20421710 | 17..703 | 100 | <- | Plus |
arm_2R | 20421767..20421886 | 704..823 | 100 | <- | Plus |
BS09852.5prime Sequence
908 bp (858 high quality bases) assembled on 2006-04-19
> BS09852.5prime
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ATCGCNCCNANNAANATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGA
AGAGGGAG
BS09852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-PA | 1662 | CG4622-RA | 200..892 | 216..908 | 3465 | 100 | Plus |
CG4622-PB | 1482 | CG4622-RB | 200..892 | 216..908 | 3465 | 100 | Plus |
CG4622-PA | 1662 | CG4622-RA | 1..185 | 17..201 | 925 | 100 | Plus |
CG4622-PB | 1482 | CG4622-RB | 1..185 | 17..201 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-RC | 2762 | CG4622-RC | 974..1865 | 17..908 | 4360 | 99.1 | Plus |
CG4622-RA | 1892 | CG4622-RA | 104..995 | 17..908 | 4360 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24534414..24535070 | 872..216 | 3285 | 100 | Minus |
2R | 25286936 | 2R | 24535141..24535324 | 200..17 | 920 | 100 | Minus |
2R | 25286936 | 2R | 24534327..24534363 | 908..872 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:24:18 has no hits.
BS09852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:51 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:56 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:23 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 99..995 | 9..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:11 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 99..995 | 9..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:11 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24534327..24534363 | 872..908 | 100 | <- | Minus |
2R | 24534415..24535086 | 200..871 | 98 | <- | Minus |
2R | 24535142..24535329 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:23 Download gff for
BS09852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20421850..20421886 | 872..908 | 100 | <- | Minus |
arm_2R | 20421938..20422609 | 200..871 | 98 | <- | Minus |
arm_2R | 20422665..20422852 | 9..199 | 97 | | Minus |
BS09852.complete Sequence
1694 bp assembled on 2009-08-24
GenBank Submission: KX801033
> BS09852.complete
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ACACCACCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGA
AGAGGGAGAGTCCGAAACCTTTAAATACGACGTCAACAAAATAGTGGAGT
ATCCCGGCTTCAACGTCCAGCCTAAGGCCAATTGTTTCGACGATTTTAAG
CACCACAATGTACCGCCATTCCAAGAGAGCCAGTCCAAGGAGAACTTCAT
TAAATCGTTGGGCGAAAACGTGATCAACGGTTACAAGCGCAAGAAGCTAG
TGGATTTGCCTGCTCCACACGACCGTGTTCCCGCTCCCAGCGAGTTGCTG
ACCAGCTTCGATGACTACGACATGGAACTAGAAGAGGAAACAGAGGACCC
TCCACTGCCACCATCAGTGCCCCCGCCGCAACCACCTCCGCCCGAAGAGT
GCGAAGATGGCGAACTGACAGCGCGCTCGCCATCTCCAAGCCTGGAAGAT
TTGAAGGCCCAGCAGGAGGAGCTCCTCCAAGAGCTGGATGTTAATGCGTC
GCATAACACGACAGCGAATGAATCGAAATCACCAACCGACCTGGATGACA
CGTCTGAGACGGAGGTTGGTCCATCTGCTGCCGAGTCCGGAAATAATGAG
CAGTCCCGATCAGCACCCTCGACTCCCTTTAAGGCGTCTTATGAGGGCAC
GCCTTTGCTGAAATTCTCCGTTTACGACAGACTGCCTGTGGGCAGCAACT
TTAAGGTGGGCGTCAGCGATGTGATCAACTTTGAAAACCTGCCCGACTCC
ACGGGAAAGTACGAACAAATGAAGGATCTGCTAAAGAACGTACGCGAAAA
GATGGTGAAACTGCAGAACGAGAACTGAAAGCTTTCTAGACCAT
BS09852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-RC | 1662 | CG4622-PC | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG4622-RA | 1662 | CG4622-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-RC | 2762 | CG4622-RC | 974..2635 | 17..1678 | 8310 | 100 | Plus |
CG4622-RA | 1892 | CG4622-RA | 104..1765 | 17..1678 | 8310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24533501..24534187 | 1678..992 | 3435 | 100 | Minus |
2R | 25286936 | 2R | 24534414..24535092 | 872..194 | 3380 | 99.9 | Minus |
2R | 25286936 | 2R | 24535141..24535324 | 200..17 | 920 | 100 | Minus |
2R | 25286936 | 2R | 24534243..24534363 | 992..872 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:27:20 has no hits.
BS09852.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:29 Download gff for
BS09852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 99..1759 | 17..1677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:07 Download gff for
BS09852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 104..1764 | 17..1677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:58 Download gff for
BS09852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 104..1764 | 17..1677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:58 Download gff for
BS09852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24533502..24534187 | 992..1677 | 100 | <- | Minus |
2R | 24534244..24534363 | 872..991 | 100 | <- | Minus |
2R | 24534415..24535086 | 200..871 | 100 | <- | Minus |
2R | 24535142..24535324 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:07 Download gff for
BS09852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20421025..20421710 | 992..1677 | 100 | <- | Minus |
arm_2R | 20421767..20421886 | 872..991 | 100 | <- | Minus |
arm_2R | 20421938..20422609 | 200..871 | 100 | <- | Minus |
arm_2R | 20422665..20422847 | 17..199 | 100 | | Minus |
BS09852.pep Sequence
Translation from 16 to 1677
> BS09852.pep
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*
BS09852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-PC | 553 | CG4622-PC | 1..553 | 1..553 | 2892 | 100 | Plus |
CG4622-PA | 553 | CG4622-PA | 1..553 | 1..553 | 2892 | 100 | Plus |