Clone BS09852 Report

Search the DGRC for BS09852

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG4622-RA
Protein status:BS09852.pep: full length peptide match
Sequenced Size:1694

Clone Sequence Records

BS09852.3prime Sequence

866 bp (856 high quality bases) assembled on 2006-04-19

> BS09852.3prime
ATGGTCTAGAAAGCTTTCAGTTCTCGTTCTGCAGTTTCACCATCTTTTCG
CGTACGTTCTTTAGCAGATCCTTCATTTGTTCGTACTTTCCCGTGGAGTC
GGGCAGGTTTTCAAAGTTGATCACATCGCTGACGCCCACCTTAAAGTTGC
TGCCCACAGGCAGTCTGTCGTAAACGGAGAATTTCAGCAAAGGCGTGCCC
TCATAAGACGCCTTAAAGGGAGTCGAGGGTGCTGATCGGGACTGCTCATT
ATTTCCGGACTCGGCAGCAGATGGACCAACCTCCGTCTCAGACGTGTCAT
CCAGGTCGGTTGGTGATTTCGATTCATTCGCTGTCGTGTTATGCGACGCA
TTAACATCCAGCTCTTGGAGGAGCTCCTCCTGCTGGGCCTTCAAATCTTC
CAGGCTTGGAGATGGCGAGCGCGCTGTCAGTTCGCCATCTTCGCACTCTT
CGGGCGGAGGTGGTTGCGGCGGGGGCACTGATGGTGGCAGTGGAGGGTCC
TCTGTTTCCTCTTCTAGTTCCATGTCGTAGTCATCGAAGCTGGTCAGCAA
CTCGCTGGGAGCGGGAACACGGTCGTGTGGAGCAGGCAAATCCACTAGCT
TCTTGCGCTTGTAACCGTTGATCACGTTTTCGCCCAACGATTTAATGAAG
TTCTCCTTGGACTGGCTCTCTTGGAATGGCGGTACATTGTGGTGCTTAAA
ATCGTCGAAACAATTGGCCTTAGGCTGGACGTTGAAGCCGGGATACTCCA
CTATTTTGTTGACGTCGTATTTAAAGGTTTCGGACTCTCCCTCTTCCTCG
TCGGATTTTGTAACCTCCGAGCCATCTGCATTAAACAGAGCTATGCCCGA
GCTCTGCACCTTTGCC

BS09852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-PA 1662 CG4622-RA 813..1662 866..17 4250 100 Minus
CG4622-PB 1482 CG4622-RB 813..1472 866..207 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-RC 2762 CG4622-RC 1786..2635 866..17 4250 100 Minus
CG4622-RA 1892 CG4622-RA 916..1765 866..17 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24533501..24534187 17..703 3435 100 Plus
2R 25286936 2R 24534243..24534363 703..823 605 100 Plus
2R 25286936 2R 24534414..24534457 823..866 220 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:31:41 has no hits.

BS09852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:50 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-PA 813..1662 17..866 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:55 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-PA 813..1662 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:24:54 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 916..1765 17..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:16:21 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 916..1765 17..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:16:21 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24534415..24534457 824..866 100   Plus
2R 24533501..24534187 17..703 100 <- Plus
2R 24534244..24534363 704..823 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:24:54 Download gff for BS09852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20421938..20421980 824..866 100   Plus
arm_2R 20421024..20421710 17..703 100 <- Plus
arm_2R 20421767..20421886 704..823 100 <- Plus

BS09852.5prime Sequence

908 bp (858 high quality bases) assembled on 2006-04-19

> BS09852.5prime
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ATCGCNCCNANNAANATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGA
AGAGGGAG

BS09852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-PA 1662 CG4622-RA 200..892 216..908 3465 100 Plus
CG4622-PB 1482 CG4622-RB 200..892 216..908 3465 100 Plus
CG4622-PA 1662 CG4622-RA 1..185 17..201 925 100 Plus
CG4622-PB 1482 CG4622-RB 1..185 17..201 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-RC 2762 CG4622-RC 974..1865 17..908 4360 99.1 Plus
CG4622-RA 1892 CG4622-RA 104..995 17..908 4360 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24534414..24535070 872..216 3285 100 Minus
2R 25286936 2R 24535141..24535324 200..17 920 100 Minus
2R 25286936 2R 24534327..24534363 908..872 185 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:24:18 has no hits.

BS09852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:51 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-PB 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:35:56 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-PB 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:23 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 99..995 9..908 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:11 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 99..995 9..908 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:11 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24534327..24534363 872..908 100 <- Minus
2R 24534415..24535086 200..871 98 <- Minus
2R 24535142..24535329 9..199 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:23 Download gff for BS09852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20421850..20421886 872..908 100 <- Minus
arm_2R 20421938..20422609 200..871 98 <- Minus
arm_2R 20422665..20422852 9..199 97   Minus

BS09852.complete Sequence

1694 bp assembled on 2009-08-24

GenBank Submission: KX801033

> BS09852.complete
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ACACCACCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGA
AGAGGGAGAGTCCGAAACCTTTAAATACGACGTCAACAAAATAGTGGAGT
ATCCCGGCTTCAACGTCCAGCCTAAGGCCAATTGTTTCGACGATTTTAAG
CACCACAATGTACCGCCATTCCAAGAGAGCCAGTCCAAGGAGAACTTCAT
TAAATCGTTGGGCGAAAACGTGATCAACGGTTACAAGCGCAAGAAGCTAG
TGGATTTGCCTGCTCCACACGACCGTGTTCCCGCTCCCAGCGAGTTGCTG
ACCAGCTTCGATGACTACGACATGGAACTAGAAGAGGAAACAGAGGACCC
TCCACTGCCACCATCAGTGCCCCCGCCGCAACCACCTCCGCCCGAAGAGT
GCGAAGATGGCGAACTGACAGCGCGCTCGCCATCTCCAAGCCTGGAAGAT
TTGAAGGCCCAGCAGGAGGAGCTCCTCCAAGAGCTGGATGTTAATGCGTC
GCATAACACGACAGCGAATGAATCGAAATCACCAACCGACCTGGATGACA
CGTCTGAGACGGAGGTTGGTCCATCTGCTGCCGAGTCCGGAAATAATGAG
CAGTCCCGATCAGCACCCTCGACTCCCTTTAAGGCGTCTTATGAGGGCAC
GCCTTTGCTGAAATTCTCCGTTTACGACAGACTGCCTGTGGGCAGCAACT
TTAAGGTGGGCGTCAGCGATGTGATCAACTTTGAAAACCTGCCCGACTCC
ACGGGAAAGTACGAACAAATGAAGGATCTGCTAAAGAACGTACGCGAAAA
GATGGTGAAACTGCAGAACGAGAACTGAAAGCTTTCTAGACCAT

BS09852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-RC 1662 CG4622-PC 1..1662 17..1678 8310 100 Plus
CG4622-RA 1662 CG4622-PA 1..1662 17..1678 8310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-RC 2762 CG4622-RC 974..2635 17..1678 8310 100 Plus
CG4622-RA 1892 CG4622-RA 104..1765 17..1678 8310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24533501..24534187 1678..992 3435 100 Minus
2R 25286936 2R 24534414..24535092 872..194 3380 99.9 Minus
2R 25286936 2R 24535141..24535324 200..17 920 100 Minus
2R 25286936 2R 24534243..24534363 992..872 605 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:27:20 has no hits.

BS09852.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:29 Download gff for BS09852.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 99..1759 17..1677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:07 Download gff for BS09852.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 104..1764 17..1677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:58 Download gff for BS09852.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 104..1764 17..1677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:58 Download gff for BS09852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24533502..24534187 992..1677 100 <- Minus
2R 24534244..24534363 872..991 100 <- Minus
2R 24534415..24535086 200..871 100 <- Minus
2R 24535142..24535324 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:07 Download gff for BS09852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20421025..20421710 992..1677 100 <- Minus
arm_2R 20421767..20421886 872..991 100 <- Minus
arm_2R 20421938..20422609 200..871 100 <- Minus
arm_2R 20422665..20422847 17..199 100   Minus

BS09852.pep Sequence

Translation from 16 to 1677

> BS09852.pep
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*

BS09852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-PC 553 CG4622-PC 1..553 1..553 2892 100 Plus
CG4622-PA 553 CG4622-PA 1..553 1..553 2892 100 Plus