Clone Sequence Records
BS09854.complete Sequence
2282 bp assembled on 2010-02-11
GenBank Submission: KX802082
> BS09854.complete
GAAGTTATCAGTCGACATGGCGGACCAGTTGAACAACGAGCCCGGCCAAC
CCACGCCGCTCATGTCCATTCGCTTCGACCAGCAGCAGCACGAAAGTGCG
GCGGCCAATGGAAATGAGAACGGCAATGGTAATGCCAATGGCGACGGCGA
TGCCTCCGAAGATGCTGTTGATGCCGAAAAAACGCCCGGAGAACTGGTCC
TGCCCAAGGCCTTGGAGGACGTTCTGGCTTTGAAGGATCAAAGGGCAGCC
GAGTTCACGGTGGACGCCGATTCGCAGGGTGGCAGTGGGGGTGCTACCCA
GGACGGCGACGAAGCGGATGTGGGCGAGGACAGCGAGGAGGATGCGGATA
ACCAGGTGAACGGGAGTGCCAGCCAAAAGACCGGCAAGCAGAGCAAGGCG
GAGCGTAACAAAAAGAAGAAGAAGCGAAAGAAGCAGAACAGGAAGATACG
CCACCAGATTGAGTTCGCACGGCAGCAGCAGTTGGCCCAAGCGGAGGAGA
ACGAACCGGAGGCCAAGGACTCGGAGACAAAAGCCCATGGCAGCGAGGAC
GAACAGGTTGCCGAAAAGGAAAAGAAGGACAAACGCAAAGAGAGTCGCAG
CAAGCGCAGGAAGGATCGTAGTGATGAGAAAGATACGGACAAAAAGGCTG
GCGAGGCCAATGATGAAAATGTGACCATTGAATATGTGCCCGAAAAGATA
ACCATTGCCGATTTGGCGCCAATGTACCGCCAGTTTTATCGTGTGTTCGA
AATCTTCAAGCTGGAAAACAAACCAAAGCCTGTGGAGAAGGACAAATCTT
CGCACGATTCTGAGTCCCATCCCAGGGACAAAAAGGCTACAGACAAACAG
CTCGAGGACGAGGACGATGACGGCGATGATGACGAAGAGCGCAAGGAAGA
CAAGGAGAAGCTGTCCAAGCGGAAACTTAAGAAACTGACCCGTTTGAGTG
TGGCAGAACTGAAACAACTGGTCTCTCGACCTGACGTAGTGGAGATGCAC
GATGTCACAGCGAGAGATCCCAAACTACTGGTTCAACTGAAAGCCTATAG
GAACACAGTACAAGTGCCGCGGCATTGGTGCTTCAAGCGAAAATATCTGC
AGGGCAAAAGGGGTATTGAGAAGCCTCCGTTCGATCTCCCCGCCTTCATC
AAAAAGACGGGCATCATGGAGATGCGCGAATCGTTGCAGGAACGAGAGGA
CGCCAAGACACTCAAGGCCAAGATGCGTGAACGCGTCCGTCCCAAGATGG
GCAAAATTGACATTGACTACCAGAAACTTCACGATGCCTTCTTCAAGTGG
CAGACCAAGCCCCGCATGACCATTCATGGCGACCTCTACTACGAGGGCAA
GGAGTTTGAGACACGCCTTAAGGAAAAGAAGCCCGGAGATCTCTCCGAGG
AGTTGCGCATTGCTCTGGGAATGCCCGTGGGACCCAACTCACACAAGATT
CCGCCACCATGGCTCATTGCTCAACAGCGCTACGGGCCGCCGCCCTCGTA
TCCGAATCTTAAAATTCCTGGCCTGAATGCTCCGATCCCAGACGGAACCT
CGTTCGGTTATCATGCCGGAGGTTGGGGCAAGCCGCCAGTGGATGAGAAC
GGAAAACCGCTGTACGGTGACGTATTTGGAACCAACATATTGGACCTTGA
TAATGGCGTAGACGAAGCTGACATTGAACGTAACCAATGGGGCGAACTGG
AATCGGAGTCAGAAGAATCATCCGAGGAGGAAGAGGAAGATGGCGAGGAC
TTGGGCGATCAGCAGGATGAGACTGGCCTGGTAACGCCAGTAGAGGGACT
AGTAACACCCTCTGGACTCACCAGTGTTCCAGCTGGCATGGAAACCCCCG
AGAACATTGAGCTTCGCAAGAAGAAAATTGAAGCCGAGATGGAGGACAAC
GAAACTCCTGTTCTGTATCAAGTGCTGCCTGAGAAGCGCACCGACCGCAT
AGGGGCTTCCATGATGGGATCAACCCATGTCTACGACGTCAGTGGCAGTG
GGGCTAACAAACAGCCCCCAGTTCGATCAACCACAGATCGCGAGGGCATT
GTGGAACTGGCTCTCGATCCTAGCGAATTGGACTTGGACAATGACGCAAT
GGCCCAGCGTTATGAGCAACAAATGCGTGAGCAGCAGAATCACCTGCAAA
AGGAGGATCTGTCAGACATGTTGGCCGAACATGTGGCGCGGCAGAAATCG
AAGCGCAAGCGACAGCAAACGGATCCGGCCAAGACCACAAAGAAGTACAA
GGAGTTCAAGTTTTAGAAGCTTTCTAGACCAT
BS09854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-RB | 2250 | CG3605-PB | 1..2250 | 17..2266 | 11250 | 100 | Plus |
| CG3605-RA | 2250 | CG3605-PA | 1..2250 | 17..2266 | 11250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-RB | 2684 | CG3605-RB | 82..2331 | 17..2266 | 11250 | 100 | Plus |
| CG3605-RA | 2403 | CG3605-RA | 82..2331 | 17..2266 | 11250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3027339..3028308 | 1651..682 | 4850 | 100 | Minus |
| 2L | 23513712 | 2L | 3028366..3029008 | 681..39 | 3215 | 100 | Minus |
| 2L | 23513712 | 2L | 3026605..3026974 | 2266..1897 | 1850 | 100 | Minus |
| 2L | 23513712 | 2L | 3027038..3027282 | 1896..1652 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:48 has no hits.
BS09854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:14 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 103..2352 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:42 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..2331 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:41 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 103..2352 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:40 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..2331 | 17..2266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:40 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3027038..3027282 | 1652..1896 | 100 | <- | Minus |
| 2L | 3027339..3028308 | 682..1651 | 100 | <- | Minus |
| 2L | 3026605..3026974 | 1897..2266 | 100 | <- | Minus |
| 2L | 3028366..3029006 | 41..681 | 100 | <- | Minus |
| 2L | 3029064..3029087 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:42 Download gff for
BS09854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3026605..3026974 | 1897..2266 | 100 | <- | Minus |
| arm_2L | 3027038..3027282 | 1652..1896 | 100 | <- | Minus |
| arm_2L | 3027339..3028308 | 682..1651 | 100 | <- | Minus |
| arm_2L | 3028366..3029006 | 41..681 | 100 | <- | Minus |
| arm_2L | 3029064..3029087 | 17..40 | 100 | | Minus |
BS09854.3prime Sequence
884 bp (784 high quality bases) assembled on 2006-04-19
> BS09854.3prime
ATGGTCTAGAAAGCTTCTAAAACTTGAACTCCTTGTACTTCTTTGTGGTC
TTGGCCGGATCCGTTTGCTGTCGCTTGCGCTTCGATTTCTGCCGCGCCAC
ATGTTCGGCCAACATGTCTGACAGATCCTCCTTTTGCAGGTGATTCTGCT
GCTCACGCATTTGTTGCTCATAACGCTGGGCCATTGCGTCATTGTCCAAG
TCCAATTCGCTAGGATCGAGAGCCAGTTCCACAATGCCCTCGCGATCTGT
GGTTGATCGAACTGGGGGCTGTTTGTTAGCCCCACTGCCACTGACGTCGT
AGACATGGGTTGATCCCATCATGGAAGCCCCTATGCGGTCGGTGCGCTTC
TCAGGCAGCACTTGATACAGAACAGGAGTTTCGTTGTCCTCCATCTCGGC
TTCAATTTTCTTCTTGCGAAGCTCAATGTTCTCGGGGGTTTCCATGCCAG
CTGGAACACTGGTGAGTCCAGAGGGTGTTACTAGTCCCTCTACTGGCGTT
ACCAGGCCAGTCTCATCCTGCTGATCGCCCAAGTCCTCGCCATCTTCCTC
TTCCTCCTCGGATGATTCTTCTGACTCCGATTCCAGTTCGCCCCATTGGT
TACGTTCAATGTCAGCTTCGTCTACGCCATTATCAAGGTCCAATATGTTG
GTTCCAAATACGTCACCGTACAGCGGTTTTCCGTTCTCATCCACTGGCGG
CTTGCCCCAACCTCCGGCATGATAACCGAACGAGGTTCCGTCTGGGATCG
GAGCATTCAGGCCAGGAATTTTAAGATTCGGATACGAGGGCGGCGGCCCG
TAGCGCTGTTGAGCAATGAGCCATGGTGGCGGAATCTTGTGTGAGTTGGG
TCCCACGGGCATTCCAGAGCAATGCCCAACTCCT
BS09854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-PA | 2250 | CG3605-RA | 1402..2250 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-RB | 2684 | CG3605-RB | 1463..2331 | 884..17 | 4305 | 99.8 | Minus |
| CG3605-RA | 2403 | CG3605-RA | 1463..2331 | 884..17 | 4305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3026605..3026974 | 17..386 | 1850 | 100 | Plus |
| 2L | 23513712 | 2L | 3027038..3027282 | 387..631 | 1225 | 100 | Plus |
| 2L | 23513712 | 2L | 3027339..3027592 | 632..884 | 1205 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:49:31 has no hits.
BS09854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:54 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-PA | 1382..2250 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:01 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-PA | 1382..2250 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:34:31 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 1463..2334 | 10..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:14 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 1463..2334 | 10..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:14 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3026602..3026974 | 10..386 | 98 | <- | Plus |
| 2L | 3027038..3027282 | 387..631 | 100 | <- | Plus |
| 2L | 3027339..3027592 | 632..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:34:31 Download gff for
BS09854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3026602..3026974 | 10..386 | 98 | <- | Plus |
| arm_2L | 3027038..3027282 | 387..631 | 100 | <- | Plus |
| arm_2L | 3027339..3027592 | 632..884 | 99 | | Plus |
BS09854.5prime Sequence
889 bp (772 high quality bases) assembled on 2006-04-19
> BS09854.5prime
GAAGTTATCAGTCGACATGGCGGACCAGTTGAACAACGAGCCCGGCCAAC
CCACGCCGCTCATGTCCATTCGCTTCGACCAGCAGCAGCACGAAAGTGCG
GCGGCCAATGGAAATGAGAACGGCAATGGTAATGCCAATGGCGACGGCGA
TGCCTCCGAAGATGCTGTTGATGCCGAAAAAACGCCCGGAGAACTGGTCC
TGCCCAAGGCCTTGGAGGACGTTCTGGCTTTGAAGGATCAAAGGGCAGCC
GAGTTCACGGTGGACGCCGATTCGCAGGGTGGCAGTGGGGGTGCTACCCA
GGACGGCGACGAAGCGGATGTGGGCGAGGACAGCGAGGAGGATGCGGATA
ACCAGGTGAACGGGAGTGCCAGCCAAAAGACCGGCAAGCAGAGCAAGGCG
GAGCGTAACAAAAAGAAGAAGAAGCGAAAGAAGCAGAACAGGAAGATACG
CCACCAGATTGAGTTCGCACGGCAGCAGCAGTTGGCCCAAGCGGAGGAGA
ACGAACCGGAGGCCAAGGACTCGGAGACAAAAGCCCATGGCAGCGAGGAC
GAACAGGTTGCCGAAAAGGAAAAGAAGGACAAACGCAAAGAGAGTCGCAG
CAAGCGCAGGAAGGATCGTAGTGATGAGAAAGATACGGACAAAAAGGCTG
GCGAGGCCAATGATGAAAATGTGACCATTGAATATGTGCCCGAAAAGATA
ACCATTGCCGATTTGGCGCCAATGTACCGCCAGTTTTATCGTGTGTTCGA
AATCTTCAAGCTGGAAAACAAACCAAAGCCTGTGGAGAAGGACAAATCTT
CGCACGATTCTGAGTCCCATCCCAGGGACAAAAAGGCTACAGACAAACAG
CTCGAGGACGAGGACGATGACGGCGATGATGACGAAGAG
BS09854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-PA | 2250 | CG3605-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-RB | 2684 | CG3605-RB | 82..954 | 17..889 | 4365 | 100 | Plus |
| CG3605-RA | 2403 | CG3605-RA | 82..954 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3028366..3029008 | 681..39 | 3215 | 100 | Minus |
| 2L | 23513712 | 2L | 3028101..3028308 | 889..682 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:58:50 has no hits.
BS09854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:55 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:02 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:12:28 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..954 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:34 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..954 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:34 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3028101..3028308 | 682..889 | 100 | <- | Minus |
| 2L | 3028366..3029006 | 41..681 | 100 | <- | Minus |
| 2L | 3029064..3029087 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:12:28 Download gff for
BS09854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3028101..3028308 | 682..889 | 100 | <- | Minus |
| arm_2L | 3028366..3029006 | 41..681 | 100 | <- | Minus |
| arm_2L | 3029064..3029087 | 17..40 | 100 | | Minus |
BS09854.pep Sequence
Translation from 16 to 2265
> BS09854.pep
MADQLNNEPGQPTPLMSIRFDQQQHESAAANGNENGNGNANGDGDASEDA
VDAEKTPGELVLPKALEDVLALKDQRAAEFTVDADSQGGSGGATQDGDEA
DVGEDSEEDADNQVNGSASQKTGKQSKAERNKKKKKRKKQNRKIRHQIEF
ARQQQLAQAEENEPEAKDSETKAHGSEDEQVAEKEKKDKRKESRSKRRKD
RSDEKDTDKKAGEANDENVTIEYVPEKITIADLAPMYRQFYRVFEIFKLE
NKPKPVEKDKSSHDSESHPRDKKATDKQLEDEDDDGDDDEERKEDKEKLS
KRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQV
PRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLK
AKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETR
LKEKKPGDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKI
PGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDE
ADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVEGLVTPSG
LTSVPAGMETPENIELRKKKIEAEMEDNETPVLYQVLPEKRTDRIGASMM
GSTHVYDVSGSGANKQPPVRSTTDREGIVELALDPSELDLDNDAMAQRYE
QQMREQQNHLQKEDLSDMLAEHVARQKSKRKRQQTDPAKTTKKYKEFKF*
BS09854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-PB | 749 | CG3605-PB | 1..749 | 1..749 | 3906 | 100 | Plus |
| CG3605-PA | 749 | CG3605-PA | 1..749 | 1..749 | 3906 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1278..1657 | 39..421 | 190 | 24.2 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1278..1657 | 39..421 | 190 | 24.2 | Plus |
| ncm-PA | 1330 | CG12750-PA | 939..1078 | 84..218 | 163 | 26.4 | Plus |
