Clone BS09855 Report

Search the DGRC for BS09855

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptNon2-RA
Protein status:BS09855.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09855.3prime Sequence

765 bp (764 high quality bases) assembled on 2006-04-19

> BS09855.3prime
ATGGTCTAGAAAGCTTCTAATCGAGAAAGTGCGGCTTGAGATGCTTCAGC
ATGCCAAAGGTGCGGAAGCGGCGGATCTTCATCACCTTCATCAGCTCGTC
GTCGCAAATGGCGAACTGCTTGTTCTTGGGGTCGTACAAATCGCGCTCCT
TGATGATGGCCCACACCTTCTTCACGACTTCGTGGCGCGGCAGGGAGGAC
TCTCCCATGAGGGCGCTCAGTTCCGGTGATAGATTGTATGCGCGTGTGAA
GCCGGTGCTCTTACGTCCCGATCCTGTTCCCCCGGCCGCCTTGGCCTTCT
TCTTGGCCGCCGGCTTCTTGACCACCTCGTAGTCCGAGTCCGAGCCGGCA
TCGCTCTCGGTGCCGGAATCGTCGGCATTTAGGGTCTTGCGCTTCTTCTT
GGGCGCCTTGTGCTTCGTGGGCTGTGGCCTCTTCTTGGGGCTCTGCTTCT
TCTTCTTGGCGGCCTCCTCCTCGCTGCTGCTGGGGTCCTCCTCCTCGCTG
GGCTCGCTCTCATCGTCGGGATCGGCATCGGGATCCTTGCCCTCGTCATC
GTCTTCGTCCTCCTCGTCCTGCTGCTCGTTGATCACCTCCATCACGATCT
TGTCGAACTCCTTCTTGCGGCTCAGCAACGAGCAGTTCAGCTTTCCCTCC
ACCTGCTCGCGCACCCTCTTTGCCGAAATGGTCGCCAAATCGGCGTCCTT
CAGAACCGCCTGAATTTCACGACGCAGGTCCTCGCTGGAGATGTCCGACA
TGTCGACTGATAACT

BS09855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1240-PA 735 CG1240-RA 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-RA 1320 CG1240-RA 196..931 751..16 3680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2767268..2768003 751..16 3680 100 Minus
Blast to na_te.dros performed 2015-02-12 12:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 574..599 562..537 112 92.3 Minus

BS09855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:56 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:03 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:20:44 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 196..931 16..751 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:02 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
Non2-RA 196..931 16..751 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:02 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2767268..2768003 16..751 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:20:44 Download gff for BS09855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2767268..2768003 16..751 100   Minus

BS09855.5prime Sequence

765 bp (764 high quality bases) assembled on 2006-04-19

> BS09855.5prime
GAAGTTATCAGTCGACATGTCGGACATCTCCAGCGAGGACCTGCGTCGTG
AAATTCAGGCGGTTCTGAAGGACGCCGATTTGGCGACCATTTCGGCAAAG
AGGGTGCGCGAGCAGGTGGAGGGAAAGCTGAACTGCTCGTTGCTGAGCCG
CAAGAAGGAGTTCGACAAGATCGTGATGGAGGTGATCAACGAGCAGCAGG
ACGAGGAGGACGAAGACGATGACGAGGGCAAGGATCCCGATGCCGATCCC
GACGATGAGAGCGAGCCCAGCGAGGAGGAGGACCCCAGCAGCAGCGAGGA
GGAGGCCGCCAAGAAGAAGAAGCAGAGCCCCAAGAAGAGGCCACAGCCCA
CGAAGCACAAGGCGCCCAAGAAGAAGCGCAAGACCCTAAATGCCGACGAT
TCCGGCACCGAGAGCGATGCCGGCTCGGACTCGGACTACGAGGTGGTCAA
GAAGCCGGCGGCCAAGAAGAAGGCCAAGGCGGCCGGGGGAACAGGATCGG
GACGTAAGAGCACCGGCTTCACACGCGCATACAATCTATCACCGGAACTG
AGCGCCCTCATGGGAGAGTCCTCCCTGCCGCGCCACGAAGTCGTGAAGAA
GGTGTGGGCCATCATCAAGGAGCGCGATTTGTACGACCCCAAGAACAAGC
AGTTCGCCATTTGCGACGACGAGCTGATGAAGGTGATGAAGATCCGCCGC
TTCCGCACCTTTGGCATGCTGAAGCATCTCAAGCCGCACTTTCTCGATTA
GAAGCTTTCTAGACC

BS09855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1240-PA 735 CG1240-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-RA 1320 CG1240-RA 196..931 17..752 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2767268..2768003 17..752 3680 100 Plus
Blast to na_te.dros performed 2015-02-04 04:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 574..599 206..231 112 92.3 Plus

BS09855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:57 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:06 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:52 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 196..931 17..752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:35 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
Non2-RA 196..931 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:35 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2767268..2768003 17..752 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:52 Download gff for BS09855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2767268..2768003 17..752 100   Plus

BS09855.complete Sequence

767 bp (767 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636489

> BS09855.complete
GAAGTTATCAGTCGACATGTCGGACATCTCCAGCGAGGACCTGCGTCGTG
AAATTCAGGCGGTTCTGAAGGACGCCGATTTGGCGACCATTTCGGCAAAG
AGGGTGCGCGAGCAGGTGGAGGGAAAGCTGAACTGCTCGTTGCTGAGCCG
CAAGAAGGAGTTCGACAAGATCGTGATGGAGGTGATCAACGAGCAGCAGG
ACGAGGAGGACGAAGACGATGACGAGGGCAAGGATCCCGATGCCGATCCC
GACGATGAGAGCGAGCCCAGCGAGGAGGAGGACCCCAGCAGCAGCGAGGA
GGAGGCCGCCAAGAAGAAGAAGCAGAGCCCCAAGAAGAGGCCACAGCCCA
CGAAGCACAAGGCGCCCAAGAAGAAGCGCAAGACCCTAAATGCCGACGAT
TCCGGCACCGAGAGCGATGCCGGCTCGGACTCGGACTACGAGGTGGTCAA
GAAGCCGGCGGCCAAGAAGAAGGCCAAGGCGGCCGGGGGAACAGGATCGG
GACGTAAGAGCACCGGCTTCACACGCGCATACAATCTATCACCGGAACTG
AGCGCCCTCATGGGAGAGTCCTCCCTGCCGCGCCACGAAGTCGTGAAGAA
GGTGTGGGCCATCATCAAGGAGCGCGATTTGTACGACCCCAAGAACAAGC
AGTTCGCCATTTGCGACGACGAGCTGATGAAGGTGATGAAGATCCGCCGC
TTCCGCACCTTTGGCATGCTGAAGCATCTCAAGCCGCACTTTCTCGATTA
GAAGCTTTCTAGACCAT

BS09855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-RA 735 CG1240-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-RA 1320 CG1240-RA 196..931 17..752 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2767268..2768003 17..752 3680 100 Plus
Blast to na_te.dros performed 2014-11-27 00:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 574..599 206..231 112 92.3 Plus

BS09855.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:48 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:28 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 199..934 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:23 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 196..930 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:48 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 199..934 17..752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:49 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
Non2-RA 196..930 17..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:49 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2767268..2768002 17..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:23 Download gff for BS09855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2767268..2768002 17..751 100   Plus

BS09855.pep Sequence

Translation from 16 to 750

> BS09855.pep
MSDISSEDLRREIQAVLKDADLATISAKRVREQVEGKLNCSLLSRKKEFD
KIVMEVINEQQDEEDEDDDEGKDPDADPDDESEPSEEEDPSSSEEEAAKK
KKQSPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKKPAAK
KKAKAAGGTGSGRKSTGFTRAYNLSPELSALMGESSLPRHEVVKKVWAII
KERDLYDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPHFLD*

BS09855.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-PA 244 CG1240-PA 1..244 1..244 1249 100 Plus