Clone Sequence Records
BS09855.3prime Sequence
765 bp (764 high quality bases) assembled on 2006-04-19
> BS09855.3prime
ATGGTCTAGAAAGCTTCTAATCGAGAAAGTGCGGCTTGAGATGCTTCAGC
ATGCCAAAGGTGCGGAAGCGGCGGATCTTCATCACCTTCATCAGCTCGTC
GTCGCAAATGGCGAACTGCTTGTTCTTGGGGTCGTACAAATCGCGCTCCT
TGATGATGGCCCACACCTTCTTCACGACTTCGTGGCGCGGCAGGGAGGAC
TCTCCCATGAGGGCGCTCAGTTCCGGTGATAGATTGTATGCGCGTGTGAA
GCCGGTGCTCTTACGTCCCGATCCTGTTCCCCCGGCCGCCTTGGCCTTCT
TCTTGGCCGCCGGCTTCTTGACCACCTCGTAGTCCGAGTCCGAGCCGGCA
TCGCTCTCGGTGCCGGAATCGTCGGCATTTAGGGTCTTGCGCTTCTTCTT
GGGCGCCTTGTGCTTCGTGGGCTGTGGCCTCTTCTTGGGGCTCTGCTTCT
TCTTCTTGGCGGCCTCCTCCTCGCTGCTGCTGGGGTCCTCCTCCTCGCTG
GGCTCGCTCTCATCGTCGGGATCGGCATCGGGATCCTTGCCCTCGTCATC
GTCTTCGTCCTCCTCGTCCTGCTGCTCGTTGATCACCTCCATCACGATCT
TGTCGAACTCCTTCTTGCGGCTCAGCAACGAGCAGTTCAGCTTTCCCTCC
ACCTGCTCGCGCACCCTCTTTGCCGAAATGGTCGCCAAATCGGCGTCCTT
CAGAACCGCCTGAATTTCACGACGCAGGTCCTCGCTGGAGATGTCCGACA
TGTCGACTGATAACT
BS09855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1240-PA | 735 | CG1240-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Non2-RA | 1320 | CG1240-RA | 196..931 | 751..16 | 3680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2767268..2768003 | 751..16 | 3680 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 562..537 | 112 | 92.3 | Minus |
BS09855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:56 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:03 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:20:44 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 196..931 | 16..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:02 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Non2-RA | 196..931 | 16..751 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:02 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2767268..2768003 | 16..751 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:20:44 Download gff for
BS09855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2767268..2768003 | 16..751 | 100 | | Minus |
BS09855.5prime Sequence
765 bp (764 high quality bases) assembled on 2006-04-19
> BS09855.5prime
GAAGTTATCAGTCGACATGTCGGACATCTCCAGCGAGGACCTGCGTCGTG
AAATTCAGGCGGTTCTGAAGGACGCCGATTTGGCGACCATTTCGGCAAAG
AGGGTGCGCGAGCAGGTGGAGGGAAAGCTGAACTGCTCGTTGCTGAGCCG
CAAGAAGGAGTTCGACAAGATCGTGATGGAGGTGATCAACGAGCAGCAGG
ACGAGGAGGACGAAGACGATGACGAGGGCAAGGATCCCGATGCCGATCCC
GACGATGAGAGCGAGCCCAGCGAGGAGGAGGACCCCAGCAGCAGCGAGGA
GGAGGCCGCCAAGAAGAAGAAGCAGAGCCCCAAGAAGAGGCCACAGCCCA
CGAAGCACAAGGCGCCCAAGAAGAAGCGCAAGACCCTAAATGCCGACGAT
TCCGGCACCGAGAGCGATGCCGGCTCGGACTCGGACTACGAGGTGGTCAA
GAAGCCGGCGGCCAAGAAGAAGGCCAAGGCGGCCGGGGGAACAGGATCGG
GACGTAAGAGCACCGGCTTCACACGCGCATACAATCTATCACCGGAACTG
AGCGCCCTCATGGGAGAGTCCTCCCTGCCGCGCCACGAAGTCGTGAAGAA
GGTGTGGGCCATCATCAAGGAGCGCGATTTGTACGACCCCAAGAACAAGC
AGTTCGCCATTTGCGACGACGAGCTGATGAAGGTGATGAAGATCCGCCGC
TTCCGCACCTTTGGCATGCTGAAGCATCTCAAGCCGCACTTTCTCGATTA
GAAGCTTTCTAGACC
BS09855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1240-PA | 735 | CG1240-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Non2-RA | 1320 | CG1240-RA | 196..931 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2767268..2768003 | 17..752 | 3680 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 04:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 206..231 | 112 | 92.3 | Plus |
BS09855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:57 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:06 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:52 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 196..931 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:35 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Non2-RA | 196..931 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:35 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2767268..2768003 | 17..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:52 Download gff for
BS09855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2767268..2768003 | 17..752 | 100 | | Plus |
BS09855.complete Sequence
767 bp (767 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636489
> BS09855.complete
GAAGTTATCAGTCGACATGTCGGACATCTCCAGCGAGGACCTGCGTCGTG
AAATTCAGGCGGTTCTGAAGGACGCCGATTTGGCGACCATTTCGGCAAAG
AGGGTGCGCGAGCAGGTGGAGGGAAAGCTGAACTGCTCGTTGCTGAGCCG
CAAGAAGGAGTTCGACAAGATCGTGATGGAGGTGATCAACGAGCAGCAGG
ACGAGGAGGACGAAGACGATGACGAGGGCAAGGATCCCGATGCCGATCCC
GACGATGAGAGCGAGCCCAGCGAGGAGGAGGACCCCAGCAGCAGCGAGGA
GGAGGCCGCCAAGAAGAAGAAGCAGAGCCCCAAGAAGAGGCCACAGCCCA
CGAAGCACAAGGCGCCCAAGAAGAAGCGCAAGACCCTAAATGCCGACGAT
TCCGGCACCGAGAGCGATGCCGGCTCGGACTCGGACTACGAGGTGGTCAA
GAAGCCGGCGGCCAAGAAGAAGGCCAAGGCGGCCGGGGGAACAGGATCGG
GACGTAAGAGCACCGGCTTCACACGCGCATACAATCTATCACCGGAACTG
AGCGCCCTCATGGGAGAGTCCTCCCTGCCGCGCCACGAAGTCGTGAAGAA
GGTGTGGGCCATCATCAAGGAGCGCGATTTGTACGACCCCAAGAACAAGC
AGTTCGCCATTTGCGACGACGAGCTGATGAAGGTGATGAAGATCCGCCGC
TTCCGCACCTTTGGCATGCTGAAGCATCTCAAGCCGCACTTTCTCGATTA
GAAGCTTTCTAGACCAT
BS09855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Non2-RA | 735 | CG1240-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Non2-RA | 1320 | CG1240-RA | 196..931 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2767268..2768003 | 17..752 | 3680 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 206..231 | 112 | 92.3 | Plus |
BS09855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:48 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:28 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 199..934 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:23 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 196..930 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:48 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1240-RA | 199..934 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:49 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Non2-RA | 196..930 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:49 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2767268..2768002 | 17..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:23 Download gff for
BS09855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2767268..2768002 | 17..751 | 100 | | Plus |
BS09855.pep Sequence
Translation from 16 to 750
> BS09855.pep
MSDISSEDLRREIQAVLKDADLATISAKRVREQVEGKLNCSLLSRKKEFD
KIVMEVINEQQDEEDEDDDEGKDPDADPDDESEPSEEEDPSSSEEEAAKK
KKQSPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKKPAAK
KKAKAAGGTGSGRKSTGFTRAYNLSPELSALMGESSLPRHEVVKKVWAII
KERDLYDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPHFLD*
BS09855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Non2-PA | 244 | CG1240-PA | 1..244 | 1..244 | 1249 | 100 | Plus |