Clone Sequence Records
BS09856.3prime Sequence
874 bp (823 high quality bases) assembled on 2006-04-19
> BS09856.3prime
ATGGTCTAGAAAGCTTCTAGTTGTAGCCGAGTACAGCCTTTAGGTAATCG
GCAATTCCTTTGCTCTCCACCCGCTCCTCCAGCTGCTTAACTGAACGCTC
CAGTTTTCCCTCTTTATCCAATTCTCTGGCATAGTAGAACAAGTTAAGAA
CACGCTTTTGGTTTTCGAACTTCTCTTGGCCTTCGATATCGCCCGTGATC
TGCAGCTTATCCAAGTGACTGACTATCTCAGGAGCAGAACGGACTAGAGC
GGCCATGAAGACTCCATTCAGTTGGCGGCAGAGCGTGGCCATGGCTCGCA
ATGTACTCTCACCCACTGTTGGCTTCAGCAGCAGTTGCGGCAGATAGCTG
AGAAACGGAGTGAATCTCTGTTCGCCGCCAAAGTGCGTGTACAAATCGGA
ACGCTCCACAATCTCGCAGAGAAGGTTCAGCACTCGAGTGGCAACGCCTT
CGCGTGTGGTAAATCGTTGGCTCACATATGCATCAATGGATGCGCTCAGC
AGGCTGGTCAACGGCTCCGTCACGATTTTCATCAGCGATGTGGCGTTTTC
GAAGAGCAGCGCACGCAGTGAAGCCACCAGTGAGAGCTGCTGCTCCGGCG
AAAGCGAATTAAGGCGTTTCAAAGTCTCGTGCATGTACTCAATTAAATGC
GCAAACATTTGAGTCTGTCTCTCGACGGGAGTCGGAAAGAACTTACAGGC
CAGCTGGACAATACCCAGGTTTTGTGGCATACAAAGTTCTCCGCCATCTA
CGGCTCCCTTGTCCTTGGATGAATTCTTGGTTGCCAGCGGTATCTGTTGA
TAGGGAAAACGACTGCCGTCCTTGTTCAAAAAGTTGAGCAGGAACTTCTG
GGCATAGTTTTTCCTCAGCCAATC
BS09856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PA | 1914 | CG1575-RA | 1057..1914 | 874..17 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 1103..1960 | 874..17 | 4275 | 99.9 | Minus |
| CG1575-RA | 2119 | CG1575-RA | 1169..2026 | 874..17 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8118180..8119037 | 874..17 | 4275 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:55:16 has no hits.
BS09856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:58 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1057..1914 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:07 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1057..1914 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:33 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1169..2031 | 11..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:10 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1169..2031 | 11..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:10 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8118180..8119042 | 11..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:33 Download gff for
BS09856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8012213..8013075 | 11..874 | 99 | | Minus |
BS09856.5prime Sequence
917 bp (763 high quality bases) assembled on 2006-04-19
> BS09856.5prime
GAAGTTATCAGTCGACATGGGCGGCCACCACAAGAAGAACCTGCGTGCGG
AGAAGGCCAAAGTGAAGCTGAAGGGCGCCAAGCTGCCCAAGGGCCTGAAC
GTGACCAAGACGGACTTCAAGGTGCGCAAAATTGAGATTCGGGAGCAGCT
GAAGGAGTCCTCCTACTCGGAAACGGGCCAGCGACAGTTCAATCTCAAGG
AGACACTGTCCCGTCTGAAGCATCATAGTGTCAAGTTCCGCACTGATGCA
CAGCGCAATGTGCGCGACTCCCTGAAGTCCGGCAATGCGGACCATTTAAT
TGGTCATCTGAACGAGCTGTTCCAAGGAATTGCGGCCGGAGCTTTGGACA
TGGAGGGGTCGGCGCGAAAGGAATCATTCAAGACCCTTGATGTTCTGCTA
GAGGCACTGCAGCCACAAGCAGTGGCGCCCTTCTTCCATGTCATAGCCAC
CTATTTGCGTTGCGCCATGACTCACGTGCTGCCCGCCATCCAGGAGGACT
CGCTGCTCATGCTCGACGTCCTACTGTTGCGCGTACCACCGGCTTTCTTG
GCCGAGCGGAGTGCCAGCACCATAATTGGCAACTTCATCGACATGATCTC
CCGCGCCCGCCACGACAACGAGCGTTCGAATCGAACGTTGACATTGAACC
TGAGTCAGGGCAAGCAGACGACTGTGAAGTGGCGCACCAAGGTGCTTATC
CGTCTGCAGCAGATCCTCAGCACGCTAGTCACCTCGAAGACGCCAAAGTC
AGCCGCTGCCCGTGTGGTTCACTTCGAGGAGATGCGTCCGCAATATTACA
ATGTGCTGTGTCCCGTGCGCCATGANCATCGCAATCTGCATGCCATCCTC
AATGAATCCAAGCTAAACGCGGAAGGCACTCACCTGCATACGTATGTGGA
GCAACTGTTACCACTAC
BS09856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PA | 1914 | CG1575-RA | 1..901 | 17..917 | 4386 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 47..947 | 17..917 | 4434 | 99.4 | Plus |
| CG1575-RA | 2119 | CG1575-RA | 113..1013 | 17..917 | 4434 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8117124..8118024 | 17..917 | 4434 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:41:41 has no hits.
BS09856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:21:59 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:08 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:04 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..1013 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:48 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..1013 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:48 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8117124..8118024 | 17..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:04 Download gff for
BS09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8011157..8012057 | 17..917 | 99 | | Plus |
BS09856.complete Sequence
1946 bp assembled on 2008-01-16
GenBank Submission: FJ636490
> BS09856.complete
GAAGTTATCAGTCGACATGGGCGGCCACCACAAGAAGAACCTGCGTGCGG
AGAAGGCCAAAGTGAAGCTGAAGGGCGCCAAGCTGCCCAAGGGCCTGAAC
GTGACCAAGACGGACTTCAAGGTGCGCAAAATTGAGATTCGGGAGCAGCT
GAAGGAGTCCTCCTACTCGGAAACGGGCCAGCGACAGTTCAATCTCAAGG
AGACACTGTCCCGTCTGAAGCATCATAGTGTCAAGTTCCGCACTGATGCA
CAGCGCAATGTGCGCGACTCCCTGAAGTCCGGCAATGCGGACCATTTAAT
TGGTCATCTGAACGAGCTGTTCCAAGGAATTGCGGCCGGAGCTTTGGACA
TGGAGGGGTCGGCGCGAAAGGAATCATTCAAGACCCTTGATGTTCTGCTA
GAGGCACTGCAGCCACAAGCAGTGGCGCCCTTCTTCCATGTCATAGCCAC
CTATTTGCGTTGCGCCATGACTCACGTGCTGCCCGCCATCCAGGAGGACT
CGCTGCTCATGCTCGACGTCCTACTGTTGCGCGTACCACCGGCTTTCTTG
GCCGAGCGGAGTGCCAGCACCATAATTGGCAACTTCATCGACATGATCTC
CCGCGCCCGCCACGACAACGAGCGTTCGAATCGAACGTTGACATTGAACC
TGAGTCAGGGCAAGCAGACGACTGTGAAGTGGCGCACCAAGGTGCTTATC
CGTCTGCAGCAGATCCTCAGCACGCTAGTCACCTCGAAGACGCCAAAGTC
AGCCGCTGCCCGTGTGGTTCACTTCGAGGAGATGCGTCCGCAATATTACA
ATGTGCTGTGTCCCGTGCGCCATGACAATCGCAATCTGCATGCCATCCTC
AATGAATCCAAGCTAACGGCGGAAGGCACTCAACTGCATACGTATGTGGA
GCAACTGTTACCACTACTCCAGGACAACTGGATGGAGGTGCGGCCGCAGC
AGCAACAACCTCTGCTCAACCAAGATGCGGCGGCCAGTCTGCATGTGGTG
ATTGGTCTAATGAGTCTGCTCTGGAATCTAATTGAGCAGCATGAGGCGGA
GCACAATACCACGGAGCTAAGCGATTGGCTGAGGAAAAACTATGCCCAGA
AGTTCCTGCTCAACTTTTTGGACAAGGACGGCAGTCGTTTTCCCTATCAA
CAGATACCGCTGGCAACCAAGAATTCATCCAAGGACAAGGGAGCCGTAGA
TGGCGGAGAACTTTGTATGCCACAAAACCTGGGTATTGTCCAGCTGGCCT
GTAAGTTCTTTCCGACTCCCGTCGAGAGACAGACTCAAATGTTTGCGCAT
TTAATTGAGTACATGCACGAGACTTTGAAACGCCTTAATTCGCTTTCGCC
GGAGCAGCAGCTCTCACTGGTGGCTTCACTGCGTGCGCTGCTCTTCGAAA
ACGCCACATCGCTGATGAAAATCGTGACGGAGCCGTTGACCAGCCTGCTG
AGCGCATCCATTGATGCATATGTGAGCCAACGATTTACCACACGCGAAGG
CGTTGCCACTCGAGTGCTGAACCTTCTCTGCGAGATTGTGGAGCGTTCCG
ATTTGTACACGCACTTTGGCGGCGAACAGAGATTCACTCCGTTTCTCAGC
TATCTGCCGCAACTGCTGCTGAAGCCAACAGTGGGTGAGAGTACATTGCG
AGCCATGGCCACGCTCTGCCGCCAACTGAATGGAGTCTTCATGGCCGCTC
TAGTCCGTTCTGCTCCTGAGATAGTCAGTCACTTGGATAAGCTGCAGATC
ACGGGCGATATCGAAGGCCAAGAGAAGTTCGAAAACCAAAAGCGTGTTCT
TAACTTGTTCTACTATGCCAGAGAATTGGATAAAGAGGGAAAACTGGAGC
GTTCAGTTAAGCAGCTGGAGGAGCGGGTGGAGAGCAAAGGAATTGCCGAT
TACCTAAAGGCTGTACTCGGCTACAACTAGAAGCTTTCTAGACCAT
BS09856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 1914 | CG1575-PB | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| CG1575-RA | 1914 | CG1575-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 47..1960 | 17..1930 | 9570 | 100 | Plus |
| CG1575-RA | 2119 | CG1575-RA | 113..2026 | 17..1930 | 9570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8117124..8119037 | 17..1930 | 9570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:39:07 has no hits.
BS09856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:35 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1..1914 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:28 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 62..1975 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:01 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..2026 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:36 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 62..1980 | 17..1936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:40 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..2026 | 17..1930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:40 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8117124..8119037 | 17..1930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:01 Download gff for
BS09856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8011157..8013070 | 17..1930 | 100 | | Plus |
BS09856.pep Sequence
Translation from 16 to 1929
> BS09856.pep
MGGHHKKNLRAEKAKVKLKGAKLPKGLNVTKTDFKVRKIEIREQLKESSY
SETGQRQFNLKETLSRLKHHSVKFRTDAQRNVRDSLKSGNADHLIGHLNE
LFQGIAAGALDMEGSARKESFKTLDVLLEALQPQAVAPFFHVIATYLRCA
MTHVLPAIQEDSLLMLDVLLLRVPPAFLAERSASTIIGNFIDMISRARHD
NERSNRTLTLNLSQGKQTTVKWRTKVLIRLQQILSTLVTSKTPKSAAARV
VHFEEMRPQYYNVLCPVRHDNRNLHAILNESKLTAEGTQLHTYVEQLLPL
LQDNWMEVRPQQQQPLLNQDAAASLHVVIGLMSLLWNLIEQHEAEHNTTE
LSDWLRKNYAQKFLLNFLDKDGSRFPYQQIPLATKNSSKDKGAVDGGELC
MPQNLGIVQLACKFFPTPVERQTQMFAHLIEYMHETLKRLNSLSPEQQLS
LVASLRALLFENATSLMKIVTEPLTSLLSASIDAYVSQRFTTREGVATRV
LNLLCEIVERSDLYTHFGGEQRFTPFLSYLPQLLLKPTVGESTLRAMATL
CRQLNGVFMAALVRSAPEIVSHLDKLQITGDIEGQEKFENQKRVLNLFYY
ARELDKEGKLERSVKQLEERVESKGIADYLKAVLGYN*
BS09856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PB | 637 | CG1575-PB | 1..637 | 1..637 | 3230 | 100 | Plus |
| CG1575-PA | 637 | CG1575-PA | 1..637 | 1..637 | 3230 | 100 | Plus |
