Clone Sequence Records
BS09860.3prime Sequence
938 bp (843 high quality bases) assembled on 2006-04-19
> BS09860.3prime
ATGGTCTAGAAAGCTTTCAGTTGCCCACGCCTTGGGCAACCTTGGATTCT
TCTCCTGCATTTGCTGCCGGTTCTAGGAGCTGGCGGAGTTCCTTTGCATT
GGTGGCCATTTCTGTTGAGTTTAGTACTACAACTTTTCGGCCAAGGGATT
CCAAAAGTCTTTTCTTAAGACGTATTAATGAAGTCGGTTTCTTGCTGAAT
TTCAGAGTCTGTTCTGCGGTTAGCAGTTCAACAAAGTACACACTCTCCTG
GGCACCCATTGTCTGCACTCGTAAGCTTGGCAAATTTATTCCGACAATGG
GACACACCACATCCACGCCCTCCACATCCGCGTCGCCACTCAGCTCCTGG
GCGTATTTCGTCAAGTCTGGGCGATCTTTTAGCAAATAAGCTGGTGCTCC
ATCAAACTCTTTAAAAGCTCGTTCTGTTTTAACTTTAGCAATTGAAGGCT
GCTCAATGGCCACAGCAGATCGCAGCACAATTAAACGACTATCCACCTTG
GGTTGGGCTCGCTGGCGTTTTTGGGCAGCTTTTAGTTCTTCAGCTGCATT
AATCAGATCCTTAGAGTAGTGACCCAAAGTGCACAGAGAGAGGCAGGTGT
CAACAAGGTTGTCAGGGAAATATTCGTACTCCCCATGATCCAGCTTGCGC
AGGGCGGTCAGTTCCAATTGTCTGATTTCCTCAGGAGTCAATGCACAATT
GAGTTGAGCGCTGGCCCACAGGAATGTGGCCAAGTCTTTGGAGCGCAGGT
CTCCAGGCTTGAGAAGAGTCATGAGTCGTTTTACGACGACAGTTAGGCAT
TCATTCTGATCCCAAAGCTGCTCGGCAAAGAATGCAAAGATATGGGCAAG
TCCTCGGGGTTCAATATGGGTTATCTTTACAGGATCCAGACAGATATCTT
GCAGGTGCTGGCACACTCGTTCATCTTTGACTTGCTGC
BS09860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PA | 1713 | CG4619-RA | 792..1713 | 938..17 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 893..1815 | 938..16 | 4615 | 100 | Minus |
| CG4619-RA | 4136 | CG4619-RA | 893..1815 | 938..16 | 4615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9939755..9940572 | 938..121 | 4075 | 99.9 | Minus |
| 2L | 23513712 | 2L | 9940629..9940737 | 124..16 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:37:41 has no hits.
BS09860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:06 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 792..1713 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:20 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 792..1713 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:44 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 893..1817 | 11..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:40 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 893..1817 | 11..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:40 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9939755..9940568 | 125..938 | 100 | -> | Minus |
| 2L | 9940629..9940739 | 11..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:44 Download gff for
BS09860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9939755..9940568 | 125..938 | 100 | -> | Minus |
| arm_2L | 9940629..9940739 | 11..124 | 97 | | Minus |
BS09860.5prime Sequence
842 bp (814 high quality bases) assembled on 2006-04-19
> BS09860.5prime
GAAGTTATCAGTCGACATGTACGCCCTGCTTCGCCGCTTTGCCGGCGTCA
CCAACTTGGGATGTCCCATCAGAACCTACGCCTCCCTTACGCCCAGAGAT
GTATTGCGGAGCAGCGATGAGACCGGCACACTGCTGACCCGCTTCGCCAA
GCACATTGCACTGGAGCGCTACAGGGATTCGGATCACGTGTTGCCCAAGA
CGACGGTCCGGTACTCTGACTTCTTTCCCATCACGGACGACCGGTACTTT
CAGCGGACGGTAGAGAAAACGGATGCAGCCCAATTGCCCGCCCTGATCAT
CCAGGCATCCAGCTATCGCTCCAATGCCGCTGTACCCATGTATGTGACTG
CGCTTAACACGTTGGATAACCATGCGGCTAAACAGCTGGACAAGATGGAT
ACCGCCACAGTGCTCGAGACGCTCTACTCCTTTCTATTCCTCATACCAAG
TTGGATAAAGCGATTGGATTTTTACCAAGCAGCCATGCAACGACTGGTCA
GGGAGGATTTTCGCGGCAACAAGGAGCGATTCGTTCAGGTGTGCTTCTAT
ATGGGATTGCAAAAGAAGCAGGCCAAATCTTCTGAGGAATTCCAGCAACT
CCTGGAAGAGCATCTACAAACGCATTTGCCTGAACTAAATGAAATGGACC
TTGCCGTGGTCAGCAATGCGGCGTACAAAACCTCAACTTTGGTAACCGGT
GAGGCGAAAACGGCATACGAAGCAAGACTCGTTAATGCCATATTAAATCT
GGAGATAAACACCGGAAGCGATGCCTTGCTGGTCTCCTTTGTCAGGGCAT
TGCGTCTGCAGCAAGTCNAAGATGAACGAGTGTGCCAGCACC
BS09860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PA | 1713 | CG4619-RA | 1..826 | 17..842 | 4086 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 98..927 | 13..842 | 4109 | 99.6 | Plus |
| CG4619-RA | 4136 | CG4619-RA | 98..927 | 13..842 | 4109 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9938960..9939789 | 13..842 | 4109 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:58:36 has no hits.
BS09860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:07 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:22 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:12:26 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 94..927 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:33 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 94..927 | 9..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:33 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9938956..9939789 | 9..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:12:26 Download gff for
BS09860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9938956..9939789 | 9..842 | 99 | | Plus |
BS09860.complete Sequence
1745 bp assembled on 2008-01-16
GenBank Submission: FJ636491
> BS09860.complete
GAAGTTATCAGTCGACATGTACGCCCTGCTTCGCCGCTTTGCCGGCGTCA
CCAACTTGGGATGTCCCATCAGAACCTACGCCTCCCTTACGCCCAGAGAT
GTATTGCGGAGCAGCGATGAGACCGGCACACTGCTGACCCGCTTCGCCAA
GCACATTGCACTGGAGCGCTACAGGGATTCGGATCACGTGTTGCCCAAGA
CGACGGTCCGGTACTCTGACTTCTTTCCCATCACGGACGACCGGTACTTT
CAGCGGACGGTAGAGAAAACGGATGCAGCCCAATTGCCCGCCCTGATCAT
CCAGGCATCCAGCTATCGCTCCAATGCCGCTGTACCCATGTATGTGACTG
CGCTTAACACGTTGGATAACCATGCGGCTAAACAGCTGGACAAGATGGAT
ACCGCCACAGTGCTCGAGACGCTCTACTCCTTTCTATTCCTCATACCAAG
TTGGATAAAGCGATTGGATTTTTACCAAGCAGCCATGCAACGACTGGTCA
GGGAGGATTTTCGCGGCAACAAGGAGCGATTCGTTCAGGTGTGCTTCTAT
ATGGGATTGCAAAAGAAGCAGGCCAAATCTTCTGAGGAATTCCAGCAACT
CCTGGAAGAGCATCTACAAACGCATTTGCCTGAACTAAATGAAATGGACC
TTGCCGTGGTCAGCAATGCGGCGTACAAAACCTCAACTTTGGTAACCGGT
GAGGCGAAAACGGCATACGAAGCAAGACTCGTTAATGCCATATTAAATCT
GGAGATAAACACCGGAAGCGATGCCTTGCTGGTCTCCTTTGTCAAGGCAT
TGCGTCTGCAGCAAGTCAAAGATGAACGAGTGTGCCAGCACCTGCAAGAT
ATCTGTCTGGATCCTGTAAAGATAACCCATATTGAACCCCGAGGACTTGC
CCATATCTTTGCATTCTTTGCCGAGCAGCTTTGGGATCAGAATGAATGCC
TAACTGTCGTCGTAAAACGACTCATGACTCTTCTCAAGCCTGGAGACCTG
CGCTCCAAAGACTTGGCCACATTCCTGTGGGCCAGCGCTCAACTCAATTG
TGCATTGACTCCTGAGGAAATCAGACAATTGGAACTGACCGCCCTGCGCA
AGCTGGATCATGGGGAGTACGAATATTTCCCTGACAACCTTGTTGACACC
TGCCTCTCTCTGTGCACTTTGGGTCACTACTCTAAGGATCTGATTAATGC
AGCTGAAGAACTAAAAGCTGCCCAAAAACGCCAGCGAGCCCAACCCAAGG
TGGATAGTCGTTTAATTGTGCTGCGATCTGCTGTGGCCATTGAGCAGCCT
TCAATTGCTAAAGTTAAAACAGAACGAGCTTTTAAAGAGTTTGATGGAGC
ACCAGCTTATTTGCTAAAAGATCGCCCAGACTTGACGAAATACGCCCAGG
AGCTGAGTGGCGACGCGGATGTGGAGGGCGTGGATGTGGTGTGTCCCATT
GTCGGAATAAATTTGCCAAGCTTACGAGTGCAGACAATGGGTGCCCAGGA
GAGTGTGTACTTTGTTGAACTGCTAACCGCAGAACAGACTCTGAAATTCA
GCAAGAAACCGACTTCATTAATACGTCTTAAGAAAAGACTTTTGGAATCC
CTTGGCCGAAAAGTTGTAGTACTAAACTCAACAGAAATGGCCACCAATGC
AAAGGAACTCCGCCAGCTCCTAGAACCGGCAGCAAATGCAGGAGAAGAAT
CCAAGGTTGCCCAAGGCGTGGGCAACTGAAAGCTTTCTAGACCAT
BS09860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1713 | CG4619-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| CG4619-RA | 1713 | CG4619-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 98..1815 | 13..1730 | 8575 | 99.9 | Plus |
| CG4619-RA | 4136 | CG4619-RA | 98..1815 | 13..1730 | 8575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9938960..9940572 | 13..1625 | 8035 | 99.9 | Plus |
| 2L | 23513712 | 2L | 9940629..9940737 | 1622..1730 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:37:43 has no hits.
BS09860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:37 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 1..1713 | 17..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:38 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 100..1811 | 17..1728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:52 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 102..1813 | 17..1728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:37 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 92..1815 | 9..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:27 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 102..1813 | 17..1728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:27 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9940629..9940735 | 1622..1728 | 100 | | Plus |
| 2L | 9938964..9940568 | 17..1621 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:52 Download gff for
BS09860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9938964..9940568 | 17..1621 | 100 | -> | Plus |
| arm_2L | 9940629..9940735 | 1622..1728 | 100 | | Plus |
BS09860.pep Sequence
Translation from 16 to 1728
> BS09860.pep
MYALLRRFAGVTNLGCPIRTYASLTPRDVLRSSDETGTLLTRFAKHIALE
RYRDSDHVLPKTTVRYSDFFPITDDRYFQRTVEKTDAAQLPALIIQASSY
RSNAAVPMYVTALNTLDNHAAKQLDKMDTATVLETLYSFLFLIPSWIKRL
DFYQAAMQRLVREDFRGNKERFVQVCFYMGLQKKQAKSSEEFQQLLEEHL
QTHLPELNEMDLAVVSNAAYKTSTLVTGEAKTAYEARLVNAILNLEINTG
SDALLVSFVKALRLQQVKDERVCQHLQDICLDPVKITHIEPRGLAHIFAF
FAEQLWDQNECLTVVVKRLMTLLKPGDLRSKDLATFLWASAQLNCALTPE
EIRQLELTALRKLDHGEYEYFPDNLVDTCLSLCTLGHYSKDLINAAEELK
AAQKRQRAQPKVDSRLIVLRSAVAIEQPSIAKVKTERAFKEFDGAPAYLL
KDRPDLTKYAQELSGDADVEGVDVVCPIVGINLPSLRVQTMGAQESVYFV
ELLTAEQTLKFSKKPTSLIRLKKRLLESLGRKVVVLNSTEMATNAKELRQ
LLEPAANAGEESKVAQGVGN*
BS09860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PB | 570 | CG4619-PB | 1..570 | 1..570 | 2878 | 100 | Plus |
| CG4619-PA | 570 | CG4619-PA | 1..570 | 1..570 | 2878 | 100 | Plus |
