Clone Sequence Records
BS09862.complete Sequence
2273 bp assembled on 2010-02-11
GenBank Submission: KX801952
> BS09862.complete
GAAGTTATCAGTCGACATGGGTCGAAACCAGAAGCAAAATTTTTTCGCGG
CTCGCAAACGTCAAAAGCGGGAGAATGGTCCCAAGCGCACCGATCGTCAG
GCCCAGCCGTATGAGGAGATCAAAAGGGATAATGCCTTCTTCATCAAGTA
CTACCAACTGCAGAAGATCTGCGCCACCGATGAGGAGTGGACGCAGTTCC
TTGCTTCCATCAGGGACAATCTGCCCACTACTTTCCGTGTGACAGGATTC
AAGGACGAGGCCAAAGCCCTGCTATCCATTATTGAGACGCAGCTATTCAC
CGAGTATGTGAGGGCGGTGGCCGAGCTGCACCAGAAGGCGCCCGAGGATG
TGGAACGTCCGCTGTGCCTGCCGTGGTATCCAAACGGACTGGCCTACCAG
CTGCACCTTACCCGCAAGGACATTCGACGCTCGGAGCCGCTCTACCGGCT
GCACAACTTCCTAATTGTGGAGACCACGGCGGGCGGCATCAGCAGGCAGG
AGGCCGTATCCATGATCCCGCCAATTGTCCTGGATGTCCGACCCACGGAC
AAAGTTTTGGACATGTGTGCTGCGCCAGGTTCGAAGACAGCCCAGCTCAT
TGAGGCTCTGCACGCTGCTCCCGAGGAGCACAAGATTCCGCCCGGCTTTG
TGCTGGCCAACGATGTAGACAACAATCGGTGCTACATGCTGGTTCACCAA
GCCAAGCGTCTAAACTCGCCCTGCCTGTTGGTGACCAACCACGACAGCAG
TGTCTTTCCCAATCTCGTGACCACGAAGCCGGACGGCTCAAAGGCGATCC
TTAAGTTCGATAAGATCTTGTGCGATGTACCTTGCTCCGGCGACGGCACA
CTGCGCAAGAATCCAGACATTTGGCTGAAGTGGAACCTGGCACAGGCCTA
CAACCTCCACGGCATTCAATACCGCATCGTACGTCGTGGCGCTGAGATGC
TGGAGGTTGGCGGAAGGCTGGTGTACTCCACCTGCTCACTGAATCCCATC
GAGAACGAGGCGGTGCTGCAGCGGATCATAAAGGATGCCGACGGTGCATT
GGAGCTGGTGGATGCGGGGCACTTGGTGCCAGGTCTTAAGTACAAGCCCG
GCATGACCGACTGGAAGCTGGCCACCAAGGAGGTGGACCAGATCTTTACC
CGCTTTGAGGAAGTGCCTGAAAGCCTGCACACTATAATACGGCCCGGTAT
GTTCCCTCTGCCGGCCGACGAGATGGCCAAGATCGGGTTGGAGAAGTGCC
TCCGCGTATTGCCGCATCTCCAGGACAGCGGCGGCTTCTTTGTAGCCGTG
TTGGAGAAGCGTCGTCAGCTAAGCTTCGAAAAGAACGATGTGGTGGAGCT
GGTAAAGCTGAACGAGACGGCCAAGCAGCCTGCAGCTGAGCCGCAAGTGG
ACGCGGATGGCAAGCCCATCGAGGAGAAGTCCGTTCCGTGGGGACCGCAG
CGAAAGAAGCGACGTCTGCATGGCTACAAGGAAGATCCTTATGTCTTCTT
CGGCGAGAATGATCCTGACTACCAGGCGATCAAGGAGTTCTACCAGCTGG
ACGAATCCCTTAGTCAACGATGTCTCTTAACTCGCTGTGTCACGGAGAAA
AAGAAGAACATCTATTACTGCTCTGAACCCATCCGCGATTTGGTGCTTAA
CAACGAAAACAACATTAAGATCATCAACACGGGCGTTAAGACATTCGTGC
GCTGCGAGAACCGGCATACGGTGCATCCCTTCCGATTGGCCCAGGAGGGC
CTCCAGACCTCCAATGCCTTCATGGGCGCCAGCAGGAGAATCCAGGTGGA
GCGGGAGGACCTGGTAATGATGCTCAATTGCACTGATCCCACGCAGCCGC
CGTCGACTCACGAACTGAAGAAGGAAACCCAGGAGCGCTGCAAGGAATTG
GGGGTGGGCAGCTGCATACTTAAGTACGTGGACCAGCGGTTTACGTTGTA
CACGGTGGGCTGGCGCGGCACCTCCAGTCTGCGCGCCTATGTCCAAAAGG
ACGAGACCATCCACATTCTCCGACTGCTGGGCGCTGATCTCAGCAAGTTT
GAGACCAATAAGTACGAGGACGCGAGAGTGGCGGCTGCTGCTGCAGCGGA
CGCTGAAGTCGGCAAGAGTGCCGAGGCCGAAGCCGATTCCTCCGGCGATG
GTGACGCCACGGAGTCCACATTCTCTGGCAGTGGCGCTATTGATGTCACA
GTGGCCGCCGAGACAACAGGCACACCAATGGACACCGAAGTGGTGGCCAC
CAGTTAGAAGCTTTCTAGACCAT
BS09862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nsun2-RA | 2241 | CG6133-PA | 1..2241 | 17..2257 | 11205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nsun2-RA | 2444 | CG6133-RA | 131..2371 | 17..2257 | 11205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4111642..4113467 | 1902..77 | 9130 | 100 | Minus |
| X | 23542271 | X | 4111229..4111585 | 2257..1901 | 1785 | 100 | Minus |
| X | 23542271 | X | 4113544..4113604 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:32 has no hits.
BS09862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:10 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-RA | 131..2371 | 17..2257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:34 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 131..2371 | 17..2257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:11 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-RA | 131..2371 | 17..2257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:34 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 131..2371 | 17..2257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:34 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4111229..4111584 | 1902..2257 | 100 | <- | Minus |
| X | 4111643..4113467 | 77..1901 | 100 | <- | Minus |
| X | 4113545..4113604 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:34 Download gff for
BS09862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4005262..4005617 | 1902..2257 | 100 | <- | Minus |
| arm_X | 4005676..4007500 | 77..1901 | 100 | <- | Minus |
| arm_X | 4007578..4007637 | 17..76 | 100 | | Minus |
BS09862.3prime Sequence
902 bp (772 high quality bases) assembled on 2006-04-19
> BS09862.3prime
ATGGTCTAGAAAGCTTCTAACTGGTGGCCACCACTTCGGTGTCCATTGGT
GTGCCTGTTGTCTCGGCGGCCACTGTGACATCAATAGCGCCACTGCCAGA
GAATGTGGACTCCGTGGCGTCACCATCGCCGGAGGAATCGGCTTCGGCCT
CGGCACTCTTGCCGACTTCAGCGTCCGCTGCAGCAGCAGCCGCCACTCTC
GCGTCCTCGTACTTATTGGTCTCAAACTTGCTGAGATCAGCGCCCAGCAG
TCGGAGAATGTGGATGGTCTCGTCCTTTTGGACATAGGCGCGCAGACTGG
AGGTGCCGCGCCAGCCCACCGTGTACAACGTAAACCGCTGGTCCACGTAC
TTAAGTATGCAGCTGCCCACCCCCAATTCCTTGCAGCGCTCCTGGGTTTC
CTTCTTCAGTTCGTGAGTCGACGGCGGCTGCGTGGGATCAGTGCAATTGA
GCATCATTACCAGGTCCTCCCGCTCCACCTGGATTCTCCTGCTGGCGCCC
ATGAAGGCATTGGAGGTCTGGAGGCCCTCCTGGGCCAATCGGAAGGGATG
CACCGTATGCCGGTTCTCGCAGCGCACGAATGTCTTAACGCCCGTGTTGA
TGATCTTAATGTTGTTTTCGTTGTTAAGCACCAAATCGCGGATGGGTTCA
GAGCAGTAATAGATGTTCTTCTTTTTCTCCGTGACACAGCGAGTTAAGAG
ACATCGTTGACTAAGGGATTCGTCCAGCTGGTAGAACTCCTTGATCGCCT
GGTAGTCAGGATCATTCTCGCCGAAGAAGACATAANGATCTTCCTTGTAG
CCATGCAGACGTCGCTTCTTTCGCTGCGGTCCCCACGGAACGGACTTCTC
CTCGATGGGCTTGCCATCCGCGTCCACTTGCGGCTCAGCTGCAGGCTGCT
TG
BS09862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6133-PA | 2241 | CG6133-RA | 1356..2241 | 902..17 | 4411 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nsun2-RA | 2444 | CG6133-RA | 1486..2371 | 902..17 | 4419 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4111642..4112172 | 372..902 | 2644 | 99.8 | Plus |
| X | 23542271 | X | 4111229..4111585 | 17..373 | 1785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:35:21 has no hits.
BS09862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:10 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-PA | 1356..2241 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:26 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-PA | 1356..2241 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:29 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 1486..2376 | 10..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:40 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 1486..2376 | 10..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:40 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4111224..4111584 | 10..372 | 99 | <- | Plus |
| X | 4111643..4112172 | 373..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:29 Download gff for
BS09862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4005257..4005617 | 10..372 | 99 | <- | Plus |
| arm_X | 4005676..4006205 | 373..902 | 99 | | Plus |
BS09862.5prime Sequence
875 bp (756 high quality bases) assembled on 2006-04-19
> BS09862.5prime
GAAGTTATCAGTCGACATGGGTCGAAACCAGAAGCAAAATTTTTTCGCGG
CTCGCAAACGTCAAAAGCGGGAGAATGGTCCCAAGCGCACCGATCGTCAG
GCCCAGCCGTATGAGGAGATCAAAAGGGATAATGCCTTCTTCATCAAGTA
CTACCAACTGCAGAAGATCTGCGCCACCGATGAGGAGTGGACGCAGTTCC
TTGCTTCCATCAGGGACAATCTGCCCACTACTTTCCGTGTGACAGGATTC
AAGGACGAGGCCAAAGCCCTGCTATCCATTATTGAGACGCAGCTATTCAC
CGAGTATGTGAGGGCGGTGGCCGAGCTGCACCAGAAGGCGCCCGAGGATG
TGGAACGTCCGCTGTGCCTGCCGTGGTATCCAAACGGACTGGCCTACCAG
CTGCACCTTACCCGCAAGGACATTCGACGCTCGGAGCCGCTCTACCGGCT
GCACAACTTCCTAATTGTGGAGACCACGGCGGGCGGCATCAGCAGGCAGG
AGGCCGTATCCATGATCCCGCCAATTGTCCTGGATGTCCGACCCACGGAC
AAAGTTTTGGACATGTGTGCTGCGCCAGGTTCGAAGACAGCCCAGCTCAT
TGAGGCTCTGCACGCTGCTCCCGAGGAGCACAAGATTCCGCCCGGCTTTG
TGCTGGCCAACGATGTAGACAACAATCGGTGCTACATGCTGGTTCACCAA
GCCAAGCGTCTAAACTCGCCCTGCCTGTTGGTGACCAACCACGACAGCAG
TGTCTTTCCCAATCTCGTGACCACGAAGCCGGACGGCTCAAAGGCGATCC
TTAAGTTCGATAAGATCTTGTGCGATGTACCTTGCTCCGGCGACGGCACA
CTGCGCAAGAATCCAGACATTTGGC
BS09862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6133-PA | 2241 | CG6133-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nsun2-RA | 2444 | CG6133-RA | 131..989 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4112669..4113467 | 875..77 | 3995 | 100 | Minus |
| X | 23542271 | X | 4113544..4113604 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:12:31 has no hits.
BS09862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:11 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:28 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6133-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:31:21 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 131..989 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:37 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nsun2-RA | 131..989 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:37 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4112669..4113467 | 77..875 | 100 | <- | Minus |
| X | 4113545..4113604 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:31:21 Download gff for
BS09862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4006702..4007500 | 77..875 | 100 | <- | Minus |
| arm_X | 4007578..4007637 | 17..76 | 100 | | Minus |
BS09862.pep Sequence
Translation from 16 to 2256
> BS09862.pep
MGRNQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQK
ICATDEEWTQFLASIRDNLPTTFRVTGFKDEAKALLSIIETQLFTEYVRA
VAELHQKAPEDVERPLCLPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLI
VETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHA
APEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNL
VTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGI
QYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDA
GHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA
DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQLSFEKNDVVELVKLNE
TAKQPAAEPQVDADGKPIEEKSVPWGPQRKKRRLHGYKEDPYVFFGENDP
DYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYCSEPIRDLVLNNENNI
KIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVEREDLV
MMLNCTDPTQPPSTHELKKETQERCKELGVGSCILKYVDQRFTLYTVGWR
GTSSLRAYVQKDETIHILRLLGADLSKFETNKYEDARVAAAAAADAEVGK
SAEAEADSSGDGDATESTFSGSGAIDVTVAAETTGTPMDTEVVATS*
BS09862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nsun2-PA | 746 | CG6133-PA | 1..746 | 1..746 | 3903 | 100 | Plus |
| CG8545-PA | 891 | CG8545-PA | 411..688 | 152..479 | 217 | 24.8 | Plus |
| CG4749-PA | 503 | CG4749-PA | 276..443 | 162..339 | 196 | 29.7 | Plus |
