Clone Sequence Records
BS09865.3prime Sequence
958 bp (797 high quality bases) assembled on 2006-04-19
> BS09865.3prime
ATGGTCTAGAAAGCTTCTACTGACGCCACCAACTCGGGTCGCCGGAGCTC
TGCTGGCCATTGTCGGGATTGGGATTCGTGCTGGCATTTCCACGCCCCAA
AATGGGCGGCGGCGGCACACTGAACATATTGTGATGCGCAGGCGGCGGCC
GGTACTTCTCCTCATCCTCATCGTCGATCTCACGCTTGATGGTCGCGTTC
TGGTAGTCAAATGTGGGATAGCCATCGTCGACGGGCTCCTCCTTGATCTT
GATGACATCCATATCACGGAAATCGGGCTTGCGCTCCTTGACATCGCCGC
CGGATCCGGTGCCGCGTTCTCGATCCCTTCTCTCTCGCTTCCGTTCGCGA
CGCTCCCTGGAGGATTCGCGTTCGCGAGACTTGGAGCGCTTCTTTTTCTT
CTCACGCTCGCGATCGCGATCACGCTCGCGCTCCCTGTCCCGCCGATCGC
GGCGGTCGAACTCGTCGTACCGCTCCCGGCTGCCCGCTCGTCGTTTTCTG
CGCTCGCGAGAACGGCTGCGCGAGCGACCGTTGCTAGCCACAGCGCCCCG
TCCGCGATCTCGTTCACGGTCGCGGCGTTCCCTGGAGCGGGAACGTCGAC
GTTCCGCACCGAAACCGCGTCCGGGCCGGGCATCCAGGCCATTGGAGCCG
CCGCCGCGTCCAGGACCCTCGCGATCCTCACGCTCCCGCTCCAGCCGGTA
GCGCTCGCGTTCCCTCTCGTTGTCCTCGCGGCCGGAGTGCTTAATGTTGA
CATCGTTGCCGCCGCGGCGCGTTCCACCCAGACCGCCGCCCAGGCGTCGG
GGCAGCCAGCCCTTGACCGTGCGAGCCCGCTCCACGTCCACCAGGACGCG
CTTGCTGTCGATCTTCTTACCATCGGCGTGCTTGTAGGCGGCATGCATGT
CCCGCTCGTGCTCGTACTCGATGAAGGCGTACCCCTTGGGTTTACCTGAT
TCCTGGTC
BS09865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8749-PA | 1347 | snRNP70K-RA | 406..1347 | 958..17 | 4685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 602..1544 | 958..16 | 4700 | 99.9 | Minus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 602..1544 | 958..16 | 4700 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970115..6971057 | 16..958 | 4700 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:37:19 has no hits.
BS09865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:14 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 406..1347 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:31 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 406..1347 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:42 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 602..1544 | 16..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:34 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 602..1544 | 16..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:34 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970115..6971057 | 16..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:42 Download gff for
BS09865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970115..6971057 | 16..958 | 99 | | Plus |
BS09865.5prime Sequence
916 bp (823 high quality bases) assembled on 2006-04-19
> BS09865.5prime
GAAGTTATCAGTCGACATGACCCAATATCTGCCGCCGAATCTGCTGGCGC
TGTTCGCGGCACGGGAGCCCATCCCGTTCATGCCGCCGGTGGACAAGCTG
CCGCACGAGAAGAAGTCTCGCGGCTACCTGGGAGTGGCCAAGTTCATGGC
CGATTTCGAGGATCCCAAGGACACGCCGCTGCCGAAAACGGTGGAAACGC
GTCAGGAGCGGCTGGAGCGACGCCGGCGCGAGAAGGCCGAGCAAGTGGCC
TACAAGCTGGAGCGTGAGATAGCGCTGTGGGACCCCACAGAGATCAAAAA
TGCCACGGAGGACCCGTTTCGCACGCTGTTCATTGCACGCATCAACTACG
ACACGTCCGAGTCGAAGCTGCGGCGTGAGTTCGAGTTCTACGGGCCCATC
AAGAAGATCGTCCTGATCCACGACCAGGAATCAGGTAAACCCAAGGGCTA
CGCCTTCATCGAGTACGAGCACGAGCGGGACATGCATGCCGCCTACAAGC
ACGCCGATGGTAAGAAGATCGACAGCAAGCGCGTCCTGGTGGACGTGGAG
CGGGCTCGCACGGTCAAGGGCTGGCTGCCCCGACGCCTGGGCGGCGGTCT
GGGTGGAACGCGCCGCGGCGGCAACGATGTCAACATTAAGCACTCCGGCC
GCGAGGACAACGAGAGGGAACGCGAGCGCTACCGGCTGGAGCGGGAGCGT
GAGGATCGCGAGGGTCCTGGACGCGGCGGCGGCTCCAATGGCCTGGATGC
CCGGCCCGGACGCGGTTTCGGTGCGGAACGTCGACGTTCCCGCTCCAGGG
AACGCCGCGACCGTGAACGAGATCGCGGACGGGGCGCTGTGGCTAGCAAC
GGTCGCTCGCGCAGCCGTTCTCGCGAGCGCAGAAAACGACGAGCGGGCAG
CCGGGAGCGGTACGAC
BS09865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8749-PA | 1347 | snRNP70K-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 197..1096 | 17..916 | 4500 | 100 | Plus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 197..1096 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970563..6971462 | 916..17 | 4500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:34 has no hits.
BS09865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:15 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:32 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:41:36 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1096 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:17 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1096 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:17 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970563..6971465 | 13..916 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:41:36 Download gff for
BS09865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970563..6971465 | 13..916 | 99 | -> | Minus |
BS09865.complete Sequence
1379 bp (1379 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636492
> BS09865.complete
GAAGTTATCAGTCGACATGACCCAATATCTGCCGCCGAATCTGCTGGCGC
TGTTCGCGGCACGGGAGCCCATCCCGTTCATGCCGCCGGTGGACAAGCTG
CCGCACGAGAAGAAGTCTCGCGGCTACCTGGGAGTGGCCAAGTTCATGGC
CGATTTCGAGGATCCCAAGGACACGCCGCTGCCGAAAACGGTGGAAACGC
GTCAGGAGCGGCTGGAGCGACGCCGGCGCGAGAAGGCCGAGCAAGTGGCC
TACAAGCTGGAGCGTGAGATAGCGCTGTGGGACCCCACAGAGATCAAAAA
TGCCACGGAGGACCCGTTTCGCACGCTGTTCATTGCACGCATCAACTACG
ACACGTCCGAGTCGAAGCTGCGGCGTGAGTTCGAGTTCTACGGGCCCATC
AAGAAGATCGTCCTGATCCACGACCAGGAATCAGGTAAACCCAAGGGCTA
CGCCTTCATCGAGTACGAGCACGAGCGGGACATGCATGCCGCCTACAAGC
ACGCCGATGGTAAGAAGATCGACAGCAAGCGCGTCCTGGTGGACGTGGAG
CGGGCTCGCACGGTCAAGGGCTGGCTGCCCCGACGCCTGGGCGGCGGTCT
GGGTGGAACGCGCCGCGGCGGCAACGATGTCAACATTAAGCACTCCGGCC
GCGAGGACAACGAGAGGGAACGCGAGCGCTACCGGCTGGAGCGGGAGCGT
GAGGATCGCGAGGGTCCTGGACGCGGCGGCGGCTCCAATGGCCTGGATGC
CCGGCCCGGACGCGGTTTCGGTGCGGAACGTCGACGTTCCCGCTCCAGGG
AACGCCGCGACCGTGAACGAGATCGCGGACGGGGCGCTGTGGCTAGCAAC
GGTCGCTCGCGCAGCCGTTCTCGCGAGCGCAGAAAACGACGAGCGGGCAG
CCGGGAGCGGTACGACGAGTTCGACCGCCGCGATCGGCGGGACAGGGAGC
GCGAGCGTGATCGCGATCGCGAGCGTGAGAAGAAAAAGAAGCGCTCCAAG
TCTCGCGAACGCGAATCCTCCAGGGAGCGTCGCGAACGGAAGCGAGAGAG
AAGGGATCGAGAACGCGGCACCGGATCCGGCGGCGATGTCAAGGAGCGCA
AGCCCGATTTCCGTGATATGGATGTCATCAAGATCAAGGAGGAGCCCGTC
GACGATGGCTATCCCACATTTGACTACCAGAACGCGACCATCAAGCGTGA
GATCGACGATGAGGATGAGGAGAAGTACCGGCCGCCGCCTGCGCATCACA
ATATGTTCAGTGTGCCGCCGCCGCCCATTTTGGGGCGTGGAAATGCCAGC
ACGAATCCCAATCCCGACAATGGCCAGCAGAGCTCCGGCGACCCGAGTTG
GTGGCGTCAGTAGAAGCTTTCTAGACCAT
BS09865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 1347 | CG8749-PC | 1..1347 | 17..1363 | 6735 | 100 | Plus |
| snRNP-U1-70K-RA | 1347 | CG8749-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 197..1544 | 17..1364 | 6740 | 100 | Plus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 197..1544 | 17..1364 | 6740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970115..6971462 | 1364..17 | 6740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:24:43 has no hits.
BS09865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:19 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:14 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 190..1543 | 9..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:19 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 197..1543 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:19 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 190..1543 | 9..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:56 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 197..1543 | 17..1363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:56 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970116..6971462 | 17..1363 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:19 Download gff for
BS09865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970116..6971462 | 17..1363 | 100 | | Minus |
BS09865.pep Sequence
Translation from 16 to 1362
> BS09865.pep
MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDP
KDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDP
FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY
EHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRR
GGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRG
FGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYD
EFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRER
GTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDED
EEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWRQ*
BS09865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-PC | 448 | CG8749-PC | 1..448 | 1..448 | 2378 | 100 | Plus |
| snRNP-U1-70K-PA | 448 | CG8749-PA | 1..448 | 1..448 | 2378 | 100 | Plus |
| CG5808-PA | 653 | CG5808-PA | 238..513 | 100..367 | 245 | 28.3 | Plus |
| CG6227-PA | 1224 | CG6227-PA | 3..149 | 208..350 | 209 | 38 | Plus |
| CG2839-PA | 826 | CG2839-PA | 530..697 | 212..376 | 203 | 30.4 | Plus |
