Clone Sequence Records
BS09870.3prime Sequence
751 bp (750 high quality bases) assembled on 2006-04-19
> BS09870.3prime
ATGGTCTAGAAAGCTTTTACGACTGCACATTGAGCAGCAACTTTAGGTTG
TGCGTGTCGAAGTCATCGAGGAGATTCCGCTTCGAGCGGCCTGTCTGCAT
CGGCACCTGGAACTTGGGCATCGACGGCATCATCATGGGAAGCTTACCCT
CCGACCTGGACAACGTCCAGTGCTGCGGTGGCTTGGGCAGCGCCGTTGGA
GCTGGTGCATCAAAGCACTTGCTGCCCGCGAAATGCGTCAGTGCGGTGGG
TATGAGTGGGTGCTGCTGCATCTGGTGCTGGGGCGATATCTTTCCGCCCA
ACGAAGGGCTCTTCCTCTGCTTGCGAGCCGATCCTCCGACGATTCCCGGC
GAGAAACCTCCACCCAAAATGGTGGCTGGTGACTGCCGAACCTGCATAGC
TCCCTGGGGCGAACGTCCTCCTCCGTTCCTTCGGTTGTTGTTGGCAAAGA
AGAAGCCTCCACCGCCTACAGAGGATCCCTGCTGCTGCTGCGGCGACTGG
CGCTGCTGCTGCGACTGCTGATACTTGTTCTTGGATCCGGTCGACTGGGA
CTGCAGTTGCCGTTGCCTCTGGTTCGGGGGCGTGGCAAGAGCGGATAGAC
CCAGGCCAAAACCGAGACTCGTGGGCGAGGAGCTCAGGAATTGGGCGTTA
TTTGTACTGCTGGCAATACTGTTGGAATGTGCAGTTACCAAGGGCGTTGC
TGGTGCGGATGCGGATACGGATGTGGGGGAGACGGGTGCGGATGTGGGCG
A
BS09870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-PB | 858 | CG9821-RB | 124..858 | 751..17 | 3675 | 100 | Minus |
CG9821-PA | 858 | CG9821-RA | 124..858 | 751..17 | 3675 | 100 | Minus |
CG32797-PA | 609 | CG32797-RA | 241..329 | 349..261 | 195 | 88.7 | Minus |
CG32797-PA | 609 | CG32797-RA | 384..448 | 209..145 | 175 | 90.7 | Minus |
CG32797-PA | 609 | CG32797-RA | 448..501 | 100..47 | 170 | 92.5 | Minus |
CG32733-PA | 474 | CG32733-RA | 253..314 | 322..261 | 160 | 90.3 | Minus |
CG32733-PA | 474 | CG32733-RA | 309..364 | 269..214 | 155 | 91 | Minus |
CG32797-PA | 609 | CG32797-RA | 324..380 | 269..213 | 135 | 89.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-RD | 4719 | CG9821-RD | 807..1541 | 751..17 | 3675 | 100 | Minus |
CG9821-RC | 6145 | CG9821-RC | 1038..1772 | 751..17 | 3675 | 100 | Minus |
CG9821-RA | 2357 | CG9821-RA | 1422..2156 | 751..17 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8817863..8818597 | 17..751 | 3675 | 100 | Plus |
X | 23542271 | X | 2425258..2425559 | 145..443 | 815 | 85.4 | Plus |
X | 23542271 | X | 6952515..6952723 | 395..190 | 500 | 83.7 | Minus |
X | 23542271 | X | 2425205..2425258 | 47..100 | 210 | 92.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:05:14 has no hits.
BS09870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:23 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-PB | 125..858 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:43 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-PA | 125..858 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:33 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1423..2156 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:28 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1423..2156 | 17..750 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:28 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8817863..8818596 | 17..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:33 Download gff for
BS09870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4643585..4644318 | 17..750 | 100 | | Plus |
BS09870.5prime Sequence
888 bp (806 high quality bases) assembled on 2006-04-19
> BS09870.5prime
GAAGTTATCAGTCGACATGACATACTCGCACAATAGCGTTAGAAACAACA
TCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAAAAAAGGGA
GCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCGCCCACATC
CGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGCAACGCCCT
TGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATAACGCCCAA
TTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGTCTATCCGC
TCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTCCCAGTCGA
CCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCCAGTCGCCG
CAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTCTTTGCCAA
CAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGCTATGCAGG
TTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGCCGGGAATC
GTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTGGGCGGAAA
GATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACCCACCGCAC
TGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTCCAACGGCG
CTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAGGGTAAGCT
TCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGATGCAGACAG
GCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACAACCTAAAG
TTGCTGCTCAATGTGCAGTCGTAAAAGCTTTCTAGACC
BS09870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-PB | 858 | CG9821-RB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG9821-PA | 858 | CG9821-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG32797-PA | 609 | CG32797-RA | 241..329 | 542..630 | 195 | 88.7 | Plus |
CG32797-PA | 609 | CG32797-RA | 384..448 | 682..746 | 175 | 90.7 | Plus |
CG32797-PA | 609 | CG32797-RA | 448..501 | 791..844 | 170 | 92.5 | Plus |
CG32733-PA | 474 | CG32733-RA | 253..314 | 569..630 | 160 | 90.3 | Plus |
CG32733-PA | 474 | CG32733-RA | 309..364 | 622..677 | 155 | 91 | Plus |
CG32797-PA | 609 | CG32797-RA | 324..380 | 622..678 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-RD | 4719 | CG9821-RD | 684..1541 | 17..874 | 4290 | 100 | Plus |
CG9821-RC | 6145 | CG9821-RC | 915..1772 | 17..874 | 4290 | 100 | Plus |
CG9821-RA | 2357 | CG9821-RA | 1299..2156 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8817863..8818720 | 874..17 | 4290 | 100 | Minus |
X | 23542271 | X | 2425258..2425559 | 746..448 | 815 | 85.4 | Minus |
X | 23542271 | X | 6952515..6952723 | 496..701 | 500 | 83.7 | Plus |
X | 23542271 | X | 2425205..2425258 | 844..791 | 210 | 92.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:44:25 has no hits.
BS09870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:24 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-PB | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:45 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:39:18 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1299..2156 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:28 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1299..2156 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:28 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8817863..8818720 | 17..874 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:39:18 Download gff for
BS09870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4643585..4644442 | 17..874 | 100 | | Minus |
BS09870.complete Sequence
890 bp assembled on 2007-10-17
GenBank Submission: FJ636493
> BS09870.complete
GAAGTTATCAGTCGACATGACATACTCGCACAATAGCGTTAGAAACAACA
TCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAAAAAAGGGA
GCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCGCCCACATC
CGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGCAACGCCCT
TGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATAACGCCCAA
TTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGTCTATCCGC
TCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTCCCAGTCGA
CCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCCAGTCGCCG
CAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTCTTTGCCAA
CAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGCTATGCAGG
TTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGCCGGGAATC
GTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTGGGCGGAAA
GATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACCCACCGCAC
TGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTCCAACGGCG
CTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAGGGTAAGCT
TCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGATGCAGACAG
GCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACAACCTAAAG
TTGCTGCTCAATGTGCAGTCGTAAAAGCTTTCTAGACCAT
BS09870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-RD | 858 | CG9821-PD | 1..858 | 17..874 | 4290 | 100 | Plus |
CG9821-RC | 858 | CG9821-PC | 1..858 | 17..874 | 4290 | 100 | Plus |
CG9821-RA | 858 | CG9821-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-RD | 4719 | CG9821-RD | 684..1541 | 17..874 | 4290 | 100 | Plus |
CG9821-RC | 6145 | CG9821-RC | 915..1772 | 17..874 | 4290 | 100 | Plus |
CG9821-RA | 2357 | CG9821-RA | 1299..2156 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8817863..8818720 | 874..17 | 4290 | 100 | Minus |
X | 23542271 | X | 2425258..2425559 | 746..448 | 815 | 85.4 | Minus |
X | 23542271 | X | 6952515..6952723 | 496..701 | 500 | 83.7 | Plus |
X | 23542271 | X | 2425205..2425258 | 844..791 | 210 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:46:03 has no hits.
BS09870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:38 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:46 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1273..2130 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:51 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1299..2154 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:02 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1273..2128 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:56 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9821-RA | 1299..2154 | 17..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:56 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8817865..8818720 | 17..872 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:51 Download gff for
BS09870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4643587..4644442 | 17..872 | 100 | | Minus |
BS09870.pep Sequence
Translation from 16 to 873
> BS09870.pep
MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP
TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP
NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN
GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH
QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP
SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*
BS09870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9821-PD | 285 | CG9821-PD | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PC | 285 | CG9821-PC | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PA | 285 | CG9821-PA | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PB | 285 | CG9821-PB | 1..285 | 1..285 | 1462 | 100 | Plus |
CG32797-PA | 202 | CG32797-PA | 15..167 | 101..276 | 518 | 65.4 | Plus |