Clone BS09870 Report

Search the DGRC for BS09870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9821-RA
Protein status:BS09870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09870.3prime Sequence

751 bp (750 high quality bases) assembled on 2006-04-19

> BS09870.3prime
ATGGTCTAGAAAGCTTTTACGACTGCACATTGAGCAGCAACTTTAGGTTG
TGCGTGTCGAAGTCATCGAGGAGATTCCGCTTCGAGCGGCCTGTCTGCAT
CGGCACCTGGAACTTGGGCATCGACGGCATCATCATGGGAAGCTTACCCT
CCGACCTGGACAACGTCCAGTGCTGCGGTGGCTTGGGCAGCGCCGTTGGA
GCTGGTGCATCAAAGCACTTGCTGCCCGCGAAATGCGTCAGTGCGGTGGG
TATGAGTGGGTGCTGCTGCATCTGGTGCTGGGGCGATATCTTTCCGCCCA
ACGAAGGGCTCTTCCTCTGCTTGCGAGCCGATCCTCCGACGATTCCCGGC
GAGAAACCTCCACCCAAAATGGTGGCTGGTGACTGCCGAACCTGCATAGC
TCCCTGGGGCGAACGTCCTCCTCCGTTCCTTCGGTTGTTGTTGGCAAAGA
AGAAGCCTCCACCGCCTACAGAGGATCCCTGCTGCTGCTGCGGCGACTGG
CGCTGCTGCTGCGACTGCTGATACTTGTTCTTGGATCCGGTCGACTGGGA
CTGCAGTTGCCGTTGCCTCTGGTTCGGGGGCGTGGCAAGAGCGGATAGAC
CCAGGCCAAAACCGAGACTCGTGGGCGAGGAGCTCAGGAATTGGGCGTTA
TTTGTACTGCTGGCAATACTGTTGGAATGTGCAGTTACCAAGGGCGTTGC
TGGTGCGGATGCGGATACGGATGTGGGGGAGACGGGTGCGGATGTGGGCG
A

BS09870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-PB 858 CG9821-RB 124..858 751..17 3675 100 Minus
CG9821-PA 858 CG9821-RA 124..858 751..17 3675 100 Minus
CG32797-PA 609 CG32797-RA 241..329 349..261 195 88.7 Minus
CG32797-PA 609 CG32797-RA 384..448 209..145 175 90.7 Minus
CG32797-PA 609 CG32797-RA 448..501 100..47 170 92.5 Minus
CG32733-PA 474 CG32733-RA 253..314 322..261 160 90.3 Minus
CG32733-PA 474 CG32733-RA 309..364 269..214 155 91 Minus
CG32797-PA 609 CG32797-RA 324..380 269..213 135 89.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-RD 4719 CG9821-RD 807..1541 751..17 3675 100 Minus
CG9821-RC 6145 CG9821-RC 1038..1772 751..17 3675 100 Minus
CG9821-RA 2357 CG9821-RA 1422..2156 751..17 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8817863..8818597 17..751 3675 100 Plus
X 23542271 X 2425258..2425559 145..443 815 85.4 Plus
X 23542271 X 6952515..6952723 395..190 500 83.7 Minus
X 23542271 X 2425205..2425258 47..100 210 92.6 Plus
Blast to na_te.dros performed on 2015-02-12 12:05:14 has no hits.

BS09870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:23 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-PB 125..858 17..750 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:43 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-PA 125..858 17..750 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:33 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1423..2156 17..750 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:28 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1423..2156 17..750 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:28 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8817863..8818596 17..750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:33 Download gff for BS09870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4643585..4644318 17..750 100   Plus

BS09870.5prime Sequence

888 bp (806 high quality bases) assembled on 2006-04-19

> BS09870.5prime
GAAGTTATCAGTCGACATGACATACTCGCACAATAGCGTTAGAAACAACA
TCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAAAAAAGGGA
GCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCGCCCACATC
CGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGCAACGCCCT
TGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATAACGCCCAA
TTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGTCTATCCGC
TCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTCCCAGTCGA
CCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCCAGTCGCCG
CAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTCTTTGCCAA
CAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGCTATGCAGG
TTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGCCGGGAATC
GTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTGGGCGGAAA
GATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACCCACCGCAC
TGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTCCAACGGCG
CTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAGGGTAAGCT
TCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGATGCAGACAG
GCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACAACCTAAAG
TTGCTGCTCAATGTGCAGTCGTAAAAGCTTTCTAGACC

BS09870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-PB 858 CG9821-RB 1..858 17..874 4290 100 Plus
CG9821-PA 858 CG9821-RA 1..858 17..874 4290 100 Plus
CG32797-PA 609 CG32797-RA 241..329 542..630 195 88.7 Plus
CG32797-PA 609 CG32797-RA 384..448 682..746 175 90.7 Plus
CG32797-PA 609 CG32797-RA 448..501 791..844 170 92.5 Plus
CG32733-PA 474 CG32733-RA 253..314 569..630 160 90.3 Plus
CG32733-PA 474 CG32733-RA 309..364 622..677 155 91 Plus
CG32797-PA 609 CG32797-RA 324..380 622..678 135 89.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-RD 4719 CG9821-RD 684..1541 17..874 4290 100 Plus
CG9821-RC 6145 CG9821-RC 915..1772 17..874 4290 100 Plus
CG9821-RA 2357 CG9821-RA 1299..2156 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8817863..8818720 874..17 4290 100 Minus
X 23542271 X 2425258..2425559 746..448 815 85.4 Minus
X 23542271 X 6952515..6952723 496..701 500 83.7 Plus
X 23542271 X 2425205..2425258 844..791 210 92.6 Minus
Blast to na_te.dros performed on 2015-02-13 07:44:25 has no hits.

BS09870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:24 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-PB 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:45 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:39:18 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1299..2156 17..874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:28 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1299..2156 17..874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:28 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8817863..8818720 17..874 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:39:18 Download gff for BS09870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4643585..4644442 17..874 100   Minus

BS09870.complete Sequence

890 bp assembled on 2007-10-17

GenBank Submission: FJ636493

> BS09870.complete
GAAGTTATCAGTCGACATGACATACTCGCACAATAGCGTTAGAAACAACA
TCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAAAAAAGGGA
GCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCGCCCACATC
CGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGCAACGCCCT
TGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATAACGCCCAA
TTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGTCTATCCGC
TCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTCCCAGTCGA
CCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCCAGTCGCCG
CAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTCTTTGCCAA
CAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGCTATGCAGG
TTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGCCGGGAATC
GTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTGGGCGGAAA
GATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACCCACCGCAC
TGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTCCAACGGCG
CTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAGGGTAAGCT
TCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGATGCAGACAG
GCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACAACCTAAAG
TTGCTGCTCAATGTGCAGTCGTAAAAGCTTTCTAGACCAT

BS09870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-RD 858 CG9821-PD 1..858 17..874 4290 100 Plus
CG9821-RC 858 CG9821-PC 1..858 17..874 4290 100 Plus
CG9821-RA 858 CG9821-PA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-RD 4719 CG9821-RD 684..1541 17..874 4290 100 Plus
CG9821-RC 6145 CG9821-RC 915..1772 17..874 4290 100 Plus
CG9821-RA 2357 CG9821-RA 1299..2156 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8817863..8818720 874..17 4290 100 Minus
X 23542271 X 2425258..2425559 746..448 815 85.4 Minus
X 23542271 X 6952515..6952723 496..701 500 83.7 Plus
X 23542271 X 2425205..2425258 844..791 210 92.6 Minus
Blast to na_te.dros performed on 2014-11-27 19:46:03 has no hits.

BS09870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:38 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:46 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1273..2130 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:51 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1299..2154 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:02 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1273..2128 17..872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:56 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1299..2154 17..872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:56 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8817865..8818720 17..872 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:51 Download gff for BS09870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4643587..4644442 17..872 100   Minus

BS09870.pep Sequence

Translation from 16 to 873

> BS09870.pep
MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP
TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP
NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN
GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH
QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP
SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*

BS09870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-PD 285 CG9821-PD 1..285 1..285 1462 100 Plus
CG9821-PC 285 CG9821-PC 1..285 1..285 1462 100 Plus
CG9821-PA 285 CG9821-PA 1..285 1..285 1462 100 Plus
CG9821-PB 285 CG9821-PB 1..285 1..285 1462 100 Plus
CG32797-PA 202 CG32797-PA 15..167 101..276 518 65.4 Plus