Clone BS09872 Report

Search the DGRC for BS09872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9186-RA
Protein status:BS09872.pep: full length peptide match
Sequenced Size:956

Clone Sequence Records

BS09872.3prime Sequence

946 bp (794 high quality bases) assembled on 2006-04-19

> BS09872.3prime
ATGGTCTAGAAAGCTTTCAAACACGTCTGTGCTGCTGGATCATGTCTCTT
ACGATTACAGCCATAGGCTGCGAGTGGCGCAGGACGAAAGCGTGGTCGAT
CTTCTTGGTGTCCAGCTGGGCGTCCACCTTGGGGTAGTCTTTTTTGAGCT
GGTCATAGTAGGAGATTGGTACCCATCCGTCGGTAGTGCCGTAGTAAAAC
TTGAGGAGGTCCAGGTTCTGCTCTACAATCTCCCTTTGAATCCCGCGAAC
CCTGGCCATCTCATCGTCGGCCAGGAAGACCACCTTCTCCGCTACCGATG
GTTTGGAGTACTTTAGGGCGGTGCCCAGAAACTGTCGTGGAATGGAGAAA
ATCAAGAAGTAGATCTGTATCAGCATCAGGCGCAACCACACGGGCAGAAA
GTTGAAGAAGCTGAAGAAAATGTAGCCAAACACGGAGTACAGGGGCATGG
CCACCTTGGTGAACACCCATCCATTGGGCGACTCCATCATCCGCTCGACG
GTGGGGAACAGCATATAGCACTTTTGGATGCGACTCCGTATCCGCTCGTT
TTCCAGCAGCTGCAGGATCATCCACGCTCCGATGGAGTGCCCAATCAAGT
GGATCTTGACATCACTTGGCACGTATTTCTCGATGAAGGCGATTTTATGC
CGGATTTGTCCGTCCAAATTGAAGAGCTCCTCGTTGCCGCTGAGTTGAGG
AACCTCCCGAATACTGGCCTCTGGCGGATCATCATGGCCAGCGTGCCCTA
TCACCCAAACTGGAAGATCGCCCAACTCCTTTTGCAAAGTGCCTGCGAAC
TCTGTGTAGAAACCTGGCAAACCGGGATTGCCAGTTATGCAGATGACGAT
CTCCTTCTCGGGTATGGTCTCCTCAATCCACCTGCCCCATGTGAATATGT
GGGTGGGAATGGGAGTTGATGTTGACGTANGCCTCCTGCATGACGA

BS09872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PB 924 CG9186-RB 29..924 912..17 4455 99.8 Minus
CG9186-PA 924 CG9186-RA 29..924 912..17 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 294..1218 941..16 4579 99.7 Minus
CG9186-RB 1466 CG9186-RB 332..1256 941..16 4579 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311929..1312662 16..749 3670 100 Plus
3L 28110227 3L 1312719..1312912 747..941 899 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 12:04:43 has no hits.

BS09872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:27 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..924 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:49 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..924 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:29 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 329..1256 16..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:24 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 329..1256 16..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:24 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1311929..1312660 16..747 100 <- Plus
3L 1312720..1312913 748..945 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:29 Download gff for BS09872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1312720..1312913 748..945 96   Plus
arm_3L 1311929..1312660 16..747 100 <- Plus

BS09872.5prime Sequence

782 bp (667 high quality bases) assembled on 2006-04-19

> BS09872.5prime
GAAGTTATCAGTCGTCATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGAT

BS09872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PB 924 CG9186-RB 1..766 17..782 3830 100 Plus
CG9186-PA 924 CG9186-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 294..1059 17..782 3830 100 Plus
CG9186-RB 1466 CG9186-RB 332..1097 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1312088..1312662 782..208 2875 100 Minus
3L 28110227 3L 1312719..1312912 210..17 970 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:29:58 has no hits.

BS09872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:28 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:50 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:02 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1097 17..782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:06 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1097 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:06 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1312088..1312660 210..782 100 <- Minus
3L 1312720..1312912 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:02 Download gff for BS09872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1312088..1312660 210..782 100 <- Minus
arm_3L 1312720..1312912 17..209 100   Minus

BS09872.complete Sequence

956 bp assembled on 2008-08-15

GenBank Submission: FJ636494

> BS09872.complete
GAAGTTATCAGTCGTCATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGCTGT
AATCGTAAGAGACATGATCCAGCAGCACAGACGTGTTTGAAAGCTTTCTA
GACCAT

BS09872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 924 CG9186-PA 1..924 17..940 4620 100 Plus
CG9186-RB 924 CG9186-PB 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 294..1218 17..941 4625 100 Plus
CG9186-RB 1466 CG9186-RB 332..1256 17..941 4625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311929..1312662 941..208 3670 100 Minus
3L 28110227 3L 1312719..1312912 210..17 970 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:52 has no hits.

BS09872.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:54 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 292..1216 17..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:46 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1254 17..939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:50 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 292..1214 17..939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:29 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1254 17..939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:29 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311931..1312660 210..939 100 <- Minus
3L 1312720..1312912 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:46 Download gff for BS09872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311931..1312660 210..939 100 <- Minus
arm_3L 1312720..1312912 17..209 100   Minus

BS09872.pep Sequence

Translation from 16 to 939

> BS09872.pep
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRV*

BS09872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PA 307 CG9186-PA 1..307 1..307 1625 100 Plus
CG9186-PB 307 CG9186-PB 1..307 1..307 1625 100 Plus