Clone Sequence Records
BS09872.3prime Sequence
946 bp (794 high quality bases) assembled on 2006-04-19
> BS09872.3prime
ATGGTCTAGAAAGCTTTCAAACACGTCTGTGCTGCTGGATCATGTCTCTT
ACGATTACAGCCATAGGCTGCGAGTGGCGCAGGACGAAAGCGTGGTCGAT
CTTCTTGGTGTCCAGCTGGGCGTCCACCTTGGGGTAGTCTTTTTTGAGCT
GGTCATAGTAGGAGATTGGTACCCATCCGTCGGTAGTGCCGTAGTAAAAC
TTGAGGAGGTCCAGGTTCTGCTCTACAATCTCCCTTTGAATCCCGCGAAC
CCTGGCCATCTCATCGTCGGCCAGGAAGACCACCTTCTCCGCTACCGATG
GTTTGGAGTACTTTAGGGCGGTGCCCAGAAACTGTCGTGGAATGGAGAAA
ATCAAGAAGTAGATCTGTATCAGCATCAGGCGCAACCACACGGGCAGAAA
GTTGAAGAAGCTGAAGAAAATGTAGCCAAACACGGAGTACAGGGGCATGG
CCACCTTGGTGAACACCCATCCATTGGGCGACTCCATCATCCGCTCGACG
GTGGGGAACAGCATATAGCACTTTTGGATGCGACTCCGTATCCGCTCGTT
TTCCAGCAGCTGCAGGATCATCCACGCTCCGATGGAGTGCCCAATCAAGT
GGATCTTGACATCACTTGGCACGTATTTCTCGATGAAGGCGATTTTATGC
CGGATTTGTCCGTCCAAATTGAAGAGCTCCTCGTTGCCGCTGAGTTGAGG
AACCTCCCGAATACTGGCCTCTGGCGGATCATCATGGCCAGCGTGCCCTA
TCACCCAAACTGGAAGATCGCCCAACTCCTTTTGCAAAGTGCCTGCGAAC
TCTGTGTAGAAACCTGGCAAACCGGGATTGCCAGTTATGCAGATGACGAT
CTCCTTCTCGGGTATGGTCTCCTCAATCCACCTGCCCCATGTGAATATGT
GGGTGGGAATGGGAGTTGATGTTGACGTANGCCTCCTGCATGACGA
BS09872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PB | 924 | CG9186-RB | 29..924 | 912..17 | 4455 | 99.8 | Minus |
CG9186-PA | 924 | CG9186-RA | 29..924 | 912..17 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 294..1218 | 941..16 | 4579 | 99.7 | Minus |
CG9186-RB | 1466 | CG9186-RB | 332..1256 | 941..16 | 4579 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1311929..1312662 | 16..749 | 3670 | 100 | Plus |
3L | 28110227 | 3L | 1312719..1312912 | 747..941 | 899 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:04:43 has no hits.
BS09872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:27 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..924 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:49 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..924 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:29 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 329..1256 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:24 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 329..1256 | 16..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:24 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1311929..1312660 | 16..747 | 100 | <- | Plus |
3L | 1312720..1312913 | 748..945 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:29 Download gff for
BS09872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1312720..1312913 | 748..945 | 96 | | Plus |
arm_3L | 1311929..1312660 | 16..747 | 100 | <- | Plus |
BS09872.5prime Sequence
782 bp (667 high quality bases) assembled on 2006-04-19
> BS09872.5prime
GAAGTTATCAGTCGTCATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGAT
BS09872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PB | 924 | CG9186-RB | 1..766 | 17..782 | 3830 | 100 | Plus |
CG9186-PA | 924 | CG9186-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 294..1059 | 17..782 | 3830 | 100 | Plus |
CG9186-RB | 1466 | CG9186-RB | 332..1097 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1312088..1312662 | 782..208 | 2875 | 100 | Minus |
3L | 28110227 | 3L | 1312719..1312912 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:29:58 has no hits.
BS09872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:28 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:50 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:02 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1097 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:06 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1097 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:06 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1312088..1312660 | 210..782 | 100 | <- | Minus |
3L | 1312720..1312912 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:02 Download gff for
BS09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1312088..1312660 | 210..782 | 100 | <- | Minus |
arm_3L | 1312720..1312912 | 17..209 | 100 | | Minus |
BS09872.complete Sequence
956 bp assembled on 2008-08-15
GenBank Submission: FJ636494
> BS09872.complete
GAAGTTATCAGTCGTCATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGCTGT
AATCGTAAGAGACATGATCCAGCAGCACAGACGTGTTTGAAAGCTTTCTA
GACCAT
BS09872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 924 | CG9186-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
CG9186-RB | 924 | CG9186-PB | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 294..1218 | 17..941 | 4625 | 100 | Plus |
CG9186-RB | 1466 | CG9186-RB | 332..1256 | 17..941 | 4625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1311929..1312662 | 941..208 | 3670 | 100 | Minus |
3L | 28110227 | 3L | 1312719..1312912 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:52 has no hits.
BS09872.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:54 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RA | 292..1216 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:46 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1254 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:50 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RA | 292..1214 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:29 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1254 | 17..939 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:29 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1311931..1312660 | 210..939 | 100 | <- | Minus |
3L | 1312720..1312912 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:46 Download gff for
BS09872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1311931..1312660 | 210..939 | 100 | <- | Minus |
arm_3L | 1312720..1312912 | 17..209 | 100 | | Minus |
BS09872.pep Sequence
Translation from 16 to 939
> BS09872.pep
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRV*
BS09872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PA | 307 | CG9186-PA | 1..307 | 1..307 | 1625 | 100 | Plus |
CG9186-PB | 307 | CG9186-PB | 1..307 | 1..307 | 1625 | 100 | Plus |