Clone BS09873 Report

Search the DGRC for BS09873

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG12104-RA
Protein status:BS09873.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09873.3prime Sequence

783 bp (782 high quality bases) assembled on 2006-04-19

> BS09873.3prime
ATGGTCTAGAAAGCTTCTATGAGTTCATGGATATTACCCAGTGGTTGAAT
ACATTCCGGCAGTGGATGACGACGCACTCGTTGCTGCAGTACTCGTCCTC
CCAGTCCGGATTTATGATAGCTGGCTTATTGCACTGTTCCCGTGTGCACT
TCTGCACCCTAGCCGCTTCGGTGAGGAGCTGTATCTGATCGGGCGGCGGC
TCCTGCTGGGCATCCACCGACTGTTGCAGATCCTCGACAGACTCCAATTT
GGTTGTGACTAGAGGAGGTGGCTGATTGGTAGCTACTGCTGGTGGGGCCT
CTGCCTCCGACGTACCCTCCGACTCGGACAGCTGGTGGCGATAGCCCCTC
ATCAGACGGACATACTCGCGCTTCTCCTGCTCGTGCCGTAGGGCATAGAC
GTTCTTCTGCGTCTCGTCCAGGGACTCCCACATGGTTTGCACTATCACTT
GCATTTGCTCCAACGAACAGGTCGGATTCTGCTGCTTGATGGCCGTCACG
GTGTCTCGAAAGAACAGAGCGAAGGGCGCCAGAGGTTTAGGAGGTGCTTG
CGCCATGGCCTGGTTCTGCTGCTGCTCCGGCTGAACCAGCAAGTTCTGCC
CGCCGCCGCTGGCATATGTGTCGCAATTTTCCTCGTCATCGTCGTTCAAC
ATGGATTGATCCAGGCTAAGCATTCTCCGCGAGGCTTGGCTGGGGCTCTG
GCTCTCCGCCGGCGTGTCGGTCAGCTCAAACACCTCGTCGCCGAATGAGG
GAGTGTGGAACTGATTCATGTCGACTGATAACT

BS09873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PA 753 CG12104-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..856 770..17 3770 100 Minus
CG12104-RA 1182 CG12104-RA 103..856 770..17 3770 100 Minus
CG12104-RC 1029 CG12104-RC 38..703 682..17 3330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601268..1601933 17..682 3330 100 Plus
3L 28110227 3L 1602485..1602572 683..770 440 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:54:55 has no hits.

BS09873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:29 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:52 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:28 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..860 13..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:55 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..860 13..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:55 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1601264..1601933 13..682 99 <- Plus
3L 1602485..1602577 683..776 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:28 Download gff for BS09873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601264..1601933 13..682 99 <- Plus
arm_3L 1602485..1602577 683..776 97   Plus

BS09873.5prime Sequence

783 bp (782 high quality bases) assembled on 2006-04-19

> BS09873.5prime
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCATAGAAGCTTTCTAGACC

BS09873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PA 753 CG12104-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..856 16..769 3770 100 Plus
CG12104-RA 1182 CG12104-RA 103..856 16..769 3770 100 Plus
CG12104-RC 1029 CG12104-RC 38..703 104..769 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601268..1601933 769..104 3330 100 Minus
3L 28110227 3L 1602485..1602572 103..16 440 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:09 has no hits.

BS09873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:30 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:54 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:46:47 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..860 10..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:38 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..860 10..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:38 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1601264..1601933 104..773 99 <- Minus
3L 1602485..1602577 10..103 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:46:47 Download gff for BS09873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601264..1601933 104..773 99 <- Minus
arm_3L 1602485..1602577 10..103 97   Minus

BS09873.complete Sequence

785 bp (785 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636495

> BS09873.complete
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCATAGAAGCTTTCTAGACCAT

BS09873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 753 CG12104-PB 1..753 17..769 3765 100 Plus
CG12104-RA 753 CG12104-PA 1..753 17..769 3765 100 Plus
CG12104-RC 681 CG12104-PC 16..681 104..769 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..856 16..769 3770 100 Plus
CG12104-RA 1182 CG12104-RA 103..856 16..769 3770 100 Plus
CG12104-RC 1029 CG12104-RC 38..703 104..769 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601268..1601933 769..104 3330 100 Minus
3L 28110227 3L 1602485..1602572 103..16 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:13:47 has no hits.

BS09873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:20 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:15 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 142..904 10..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:01 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 104..856 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:20 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 142..904 10..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:41 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 104..856 17..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:41 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1601268..1601933 104..769 100 <- Minus
3L 1602485..1602571 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:01 Download gff for BS09873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601268..1601933 104..769 100 <- Minus
arm_3L 1602485..1602571 17..103 100   Minus

BS09873.pep Sequence

Translation from 16 to 768

> BS09873.pep
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
*

BS09873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PB 250 CG12104-PB 1..250 1..250 1323 100 Plus
CG12104-PA 250 CG12104-PA 1..250 1..250 1323 100 Plus
CG12104-PC 226 CG12104-PC 6..226 30..250 1170 100 Plus