Clone Sequence Records
BS09873.3prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BS09873.3prime
ATGGTCTAGAAAGCTTCTATGAGTTCATGGATATTACCCAGTGGTTGAAT
ACATTCCGGCAGTGGATGACGACGCACTCGTTGCTGCAGTACTCGTCCTC
CCAGTCCGGATTTATGATAGCTGGCTTATTGCACTGTTCCCGTGTGCACT
TCTGCACCCTAGCCGCTTCGGTGAGGAGCTGTATCTGATCGGGCGGCGGC
TCCTGCTGGGCATCCACCGACTGTTGCAGATCCTCGACAGACTCCAATTT
GGTTGTGACTAGAGGAGGTGGCTGATTGGTAGCTACTGCTGGTGGGGCCT
CTGCCTCCGACGTACCCTCCGACTCGGACAGCTGGTGGCGATAGCCCCTC
ATCAGACGGACATACTCGCGCTTCTCCTGCTCGTGCCGTAGGGCATAGAC
GTTCTTCTGCGTCTCGTCCAGGGACTCCCACATGGTTTGCACTATCACTT
GCATTTGCTCCAACGAACAGGTCGGATTCTGCTGCTTGATGGCCGTCACG
GTGTCTCGAAAGAACAGAGCGAAGGGCGCCAGAGGTTTAGGAGGTGCTTG
CGCCATGGCCTGGTTCTGCTGCTGCTCCGGCTGAACCAGCAAGTTCTGCC
CGCCGCCGCTGGCATATGTGTCGCAATTTTCCTCGTCATCGTCGTTCAAC
ATGGATTGATCCAGGCTAAGCATTCTCCGCGAGGCTTGGCTGGGGCTCTG
GCTCTCCGCCGGCGTGTCGGTCAGCTCAAACACCTCGTCGCCGAATGAGG
GAGTGTGGAACTGATTCATGTCGACTGATAACT
BS09873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PA | 753 | CG12104-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..856 | 770..17 | 3770 | 100 | Minus |
CG12104-RA | 1182 | CG12104-RA | 103..856 | 770..17 | 3770 | 100 | Minus |
CG12104-RC | 1029 | CG12104-RC | 38..703 | 682..17 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601268..1601933 | 17..682 | 3330 | 100 | Plus |
3L | 28110227 | 3L | 1602485..1602572 | 683..770 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:54:55 has no hits.
BS09873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:29 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:52 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:28 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..860 | 13..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:55 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..860 | 13..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:55 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601264..1601933 | 13..682 | 99 | <- | Plus |
3L | 1602485..1602577 | 683..776 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:28 Download gff for
BS09873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601264..1601933 | 13..682 | 99 | <- | Plus |
arm_3L | 1602485..1602577 | 683..776 | 97 | | Plus |
BS09873.5prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BS09873.5prime
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCATAGAAGCTTTCTAGACC
BS09873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PA | 753 | CG12104-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..856 | 16..769 | 3770 | 100 | Plus |
CG12104-RA | 1182 | CG12104-RA | 103..856 | 16..769 | 3770 | 100 | Plus |
CG12104-RC | 1029 | CG12104-RC | 38..703 | 104..769 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601268..1601933 | 769..104 | 3330 | 100 | Minus |
3L | 28110227 | 3L | 1602485..1602572 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:09 has no hits.
BS09873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:30 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:54 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:46:47 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..860 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:38 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..860 | 10..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:38 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601264..1601933 | 104..773 | 99 | <- | Minus |
3L | 1602485..1602577 | 10..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:46:47 Download gff for
BS09873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601264..1601933 | 104..773 | 99 | <- | Minus |
arm_3L | 1602485..1602577 | 10..103 | 97 | | Minus |
BS09873.complete Sequence
785 bp (785 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636495
> BS09873.complete
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCATAGAAGCTTTCTAGACCAT
BS09873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 753 | CG12104-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG12104-RA | 753 | CG12104-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
CG12104-RC | 681 | CG12104-PC | 16..681 | 104..769 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..856 | 16..769 | 3770 | 100 | Plus |
CG12104-RA | 1182 | CG12104-RA | 103..856 | 16..769 | 3770 | 100 | Plus |
CG12104-RC | 1029 | CG12104-RC | 38..703 | 104..769 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601268..1601933 | 769..104 | 3330 | 100 | Minus |
3L | 28110227 | 3L | 1602485..1602572 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:47 has no hits.
BS09873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:20 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:15 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 142..904 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:01 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 104..856 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:20 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 142..904 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:41 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 104..856 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:41 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601268..1601933 | 104..769 | 100 | <- | Minus |
3L | 1602485..1602571 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:01 Download gff for
BS09873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601268..1601933 | 104..769 | 100 | <- | Minus |
arm_3L | 1602485..1602571 | 17..103 | 100 | | Minus |
BS09873.pep Sequence
Translation from 16 to 768
> BS09873.pep
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
*
BS09873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PB | 250 | CG12104-PB | 1..250 | 1..250 | 1323 | 100 | Plus |
CG12104-PA | 250 | CG12104-PA | 1..250 | 1..250 | 1323 | 100 | Plus |
CG12104-PC | 226 | CG12104-PC | 6..226 | 30..250 | 1170 | 100 | Plus |