Clone Sequence Records
BS09874.3prime Sequence
936 bp (790 high quality bases) assembled on 2006-04-19
> BS09874.3prime
ATGGTCTAGAAAGCTTCTAGAATTCCCAGGTAGAAAGCCACTTGAGATTG
TACATTGTAGAGTTCGGCTCGTTGGCTAGAGGACCACTCATTCCGTAAGC
AAGTGGCGAGAAGGCGGCAAAACTATACACCAGGATCGAGAGAACCAGTC
CGAGGATAACGTGGTGAATCCATTTGGGCAGAACCCTCAAAATGTAGTTG
TACATAACGCCCGTCAGCAAGGAGTTGAAGATCAAGGCCGGAAAATAGTG
GTGGAAGTAGAGCACCCGTCCCATCGCCCAGAAGGGCAAATAGTGGAGCA
TCCAGCCCAGAAAAAGCCAGGCGGCCGCCCTTAAGGACTGCGCCGGGTTG
GGTGCCTCCGGGGACCCACTGGGAACTGCCTTTGGGACTATCTCCTTCGC
CGGAGTACAACAACTGCAGATGTCCGTGGTGGAGTGCTCACTCTCCTCGT
CCTGGGCCACTGTTTCCGAATCGGGAACTTGGGCTTGATTTTGGGCCGCC
GATCGGGCGAAGCCAGCTCTTCTTTGCTGAACAACTGCGTTGCACAGGAA
AACCGTGACGAAAAGGGCCAGGAAAACCAGATTACTCCACCAAATCAACG
GGTTTCCCAGCAAGTAGATGCGGTAACTGCTGCCGGAGAAGAACTGGCCC
CTGTAGTTGATTGGCCACTGCCAGGGTCTGCTGGTGACCTCGCCTTCTTT
GGGCTTGAGTCCTGCGTTTCCCTGCAGCATTACGGCGTGGGATTCGAGGA
AGCGGGCAAAGAAGCCGGGCGCATACACGCTAAAGCTTACACTGGGCATC
AACTTGTGCTCGTTGTCCTCGACGTTCCACTGCGAGTTCTTGTCGCGCAC
GTTGGGATTGCATGACACCTCCTGCTGTTCGAACCCCCATTTCGGTAGCT
GCTTCCCACTGGAGGTCAGGGCGCAGTTCTGCAGCA
BS09874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12311-PA | 2298 | Pomt2-RA | 1379..2298 | 936..17 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tw-RA | 2671 | CG12311-RA | 1538..2457 | 936..17 | 4585 | 99.9 | Minus |
tw-RB | 2840 | CG12311-RB | 1538..2457 | 936..17 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 787085..787525 | 650..210 | 2205 | 100 | Minus |
X | 23542271 | X | 787638..787832 | 211..17 | 960 | 99.5 | Minus |
X | 23542271 | X | 786874..787023 | 798..649 | 750 | 100 | Minus |
X | 23542271 | X | 786672..786809 | 936..799 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 15:54:39 has no hits.
BS09874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:31 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomt2-PA | 1380..2298 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:55 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12311-PA | 1380..2298 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:22:08 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 1539..2459 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:49:47 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 1539..2459 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:49:47 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 786673..786809 | 799..935 | 100 | -> | Minus |
X | 786874..787022 | 650..798 | 100 | -> | Minus |
X | 787086..787524 | 211..649 | 100 | -> | Minus |
X | 787639..787834 | 11..210 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:22:08 Download gff for
BS09874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 680706..680842 | 799..935 | 100 | -> | Minus |
arm_X | 680907..681055 | 650..798 | 100 | -> | Minus |
arm_X | 681119..681557 | 211..649 | 100 | -> | Minus |
arm_X | 681672..681867 | 11..210 | 97 | | Minus |
BS09874.5prime Sequence
969 bp (866 high quality bases) assembled on 2006-04-19
> BS09874.5prime
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGCAACGG
AGATGGGTTCTATAGTTCGGGCCTTCAGTCCAAGCTGATCGGCAACTCCC
TATATAATGCAAGCATGCC
BS09874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12311-PA | 2298 | Pomt2-RA | 1..953 | 17..969 | 4665 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tw-RA | 2671 | CG12311-RA | 160..1112 | 17..969 | 4705 | 99.6 | Plus |
tw-RB | 2840 | CG12311-RB | 160..1112 | 17..969 | 4705 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 785716..786176 | 509..969 | 2245 | 99.1 | Plus |
X | 23542271 | X | 784905..785015 | 17..127 | 555 | 100 | Plus |
X | 23542271 | X | 785547..785655 | 401..509 | 545 | 100 | Plus |
X | 23542271 | X | 785386..785492 | 294..400 | 535 | 100 | Plus |
X | 23542271 | X | 785233..785318 | 210..295 | 430 | 100 | Plus |
X | 23542271 | X | 785089..785173 | 126..210 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:41:31 has no hits.
BS09874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:32 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomt2-PA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:56 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12311-PA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:02 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 160..1112 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:46 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 160..1112 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:46 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 784905..785014 | 17..126 | 100 | -> | Plus |
X | 785090..785173 | 127..210 | 100 | -> | Plus |
X | 785234..785318 | 211..295 | 100 | -> | Plus |
X | 785388..785492 | 296..400 | 100 | -> | Plus |
X | 785547..785655 | 401..509 | 100 | -> | Plus |
X | 785717..786176 | 510..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:02 Download gff for
BS09874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 678938..679047 | 17..126 | 100 | -> | Plus |
arm_X | 679123..679206 | 127..210 | 100 | -> | Plus |
arm_X | 679267..679351 | 211..295 | 100 | -> | Plus |
arm_X | 679421..679525 | 296..400 | 100 | -> | Plus |
arm_X | 679580..679688 | 401..509 | 100 | -> | Plus |
arm_X | 679750..680209 | 510..969 | 99 | | Plus |
BS09874.complete Sequence
2330 bp assembled on 2008-08-14
GenBank Submission: FJ636496
> BS09874.complete
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGCAACGG
AGATGGGTTCTATAGTTCGGCCTTTCAGTCCAGGCTGATCGGCAACTCCC
TATATAATGCCAGCATGCCCAGAGATGTCGCCTACGGATCGCTAGTGACA
ATCAAGAACCACAAGACGGGCGGAGGCTACCTGCACTCGCATCATCACCT
GTATCCCAAGGGATCTGGCGCTAGGCAGCAGCAGGTTACCACTTACACCC
ACAAGGACGAGAACAACAAGTGGCTAATCAGGCCGCACAACAAGCCGGGT
CCACCAAAGGGCAAGGTACAGATCCTCCGGCACGGGGACCTCGTCCGCCT
GACTCACATGGCGACCAGGAGAAATCTGCATTCCCACAACGAACCTGCAC
CCATGACCAAGAAGCATTTGCAGGTCACAGGCTATGGCGAGTTGGGACTA
GGCGATGCCAACGACGTCTGGCGCGTGTTGATTGTGGGCGGCAAGGTCAA
CGAAACGGTACACACGGTCACTTCCCGTCTCAAGTTCATCCACCTGCTGC
AGAACTGCGCCCTGACCTCCAGTGGGAAGCAGCTACCGAAATGGGGGTTC
GAACAGCAGGAGGTGTCATGCAATCCCAACGTGCGCGACAAGAACTCGCA
GTGGAACGTCGAGGACAACGAGCACAAGTTGATGCCCAGTGTAAGCTTTA
GCGTGTATGCGCCCGGCTTCTTTGCCCGCTTCCTCGAATCCCACGCCGTA
ATGCTGCAGGGAAACGCAGGACTCAAGCCCAAAGAAGGCGAGGTCACCAG
CAGACCCTGGCAGTGGCCAATCAACTACAGGGGCCAGTTCTTCTCCGGCA
GCAGTTACCGCATCTACTTGCTGGGAAACCCGTTGATTTGGTGGAGTAAT
CTGGTTTTCCTGGCCCTTTTCGTCACGGTTTTCCTGTGCAACGCAGTTGT
TCAGCAAAGAAGAGCTGGCTTCGCCCGATCGGCGGCCCAAAATCAAGCCC
AAGTTCCCGATTCGGAAACAGTGGCCCAGGACGAGGAGAGTGAGCACTCC
ACCACGGACATCTGCAGTTGTTGTACTCCGGCGAAGGAGATAGTCCCAAA
GGCAGTTCCCAGTGGGTCCCCGGAGGCACCCAACCCGGCGCAGTCCTTAA
GGGCGGCCGCCTGGCTTTTTCTGGGCTGGATGCTCCACTATTTGCCCTTC
TGGGCGATGGGACGGGTGCTCTACTTCCACCACTATTTTCCGGCCTTGAT
CTTCAACTCCTTGCTGACGGGCGTTATGTACAACTACATTTTGAGGGTTC
TGCCCAAATGGATTCACCACGTTATCCTCGGACTGGTTCTCTCGATCCTG
GTGTATAGTTTTGCCGCCTTCTCGCCACTTGCTTACGGAATGAGTGGTCC
TCTAGCCAACGAGCCGAACTCTACAATGTACAATCTCAAGTGGCTTTCTA
CCTGGGAATTCTAGAAGCTTTCTAGACCAT
BS09874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tw-RA | 2298 | CG12311-PA | 1..2298 | 17..2314 | 11475 | 100 | Plus |
tw-RB | 2298 | CG12311-PB | 1..2298 | 17..2314 | 11475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tw-RA | 2671 | CG12311-RA | 160..2457 | 17..2314 | 11475 | 100 | Plus |
tw-RB | 2840 | CG12311-RB | 160..2457 | 17..2314 | 11475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 785716..786498 | 509..1291 | 3915 | 100 | Plus |
X | 23542271 | X | 787085..787525 | 1681..2121 | 2205 | 100 | Plus |
X | 23542271 | X | 786567..786809 | 1290..1532 | 1215 | 100 | Plus |
X | 23542271 | X | 787638..787832 | 2120..2314 | 960 | 99.5 | Plus |
X | 23542271 | X | 786874..787023 | 1533..1682 | 750 | 100 | Plus |
X | 23542271 | X | 784905..785015 | 17..127 | 555 | 100 | Plus |
X | 23542271 | X | 785547..785655 | 401..509 | 545 | 100 | Plus |
X | 23542271 | X | 785386..785492 | 294..400 | 535 | 100 | Plus |
X | 23542271 | X | 785233..785318 | 210..295 | 430 | 100 | Plus |
X | 23542271 | X | 785089..785173 | 126..210 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:59 has no hits.
BS09874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:02 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RA | 115..2414 | 17..2320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:39 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 160..2457 | 17..2314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:23 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RA | 115..2412 | 17..2314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:07 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tw-RB | 160..2457 | 17..2314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:07 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 784905..785014 | 17..126 | 100 | -> | Plus |
X | 785090..785173 | 127..210 | 100 | -> | Plus |
X | 785234..785318 | 211..295 | 100 | -> | Plus |
X | 785388..785492 | 296..400 | 100 | -> | Plus |
X | 785547..785655 | 401..509 | 100 | -> | Plus |
X | 785717..786498 | 510..1291 | 100 | -> | Plus |
X | 786569..786809 | 1292..1532 | 100 | -> | Plus |
X | 786874..787022 | 1533..1681 | 100 | -> | Plus |
X | 787086..787524 | 1682..2120 | 100 | -> | Plus |
X | 787639..787832 | 2121..2314 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:39 Download gff for
BS09874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 678938..679047 | 17..126 | 100 | -> | Plus |
arm_X | 679123..679206 | 127..210 | 100 | -> | Plus |
arm_X | 679267..679351 | 211..295 | 100 | -> | Plus |
arm_X | 679421..679525 | 296..400 | 100 | -> | Plus |
arm_X | 679580..679688 | 401..509 | 100 | -> | Plus |
arm_X | 679750..680531 | 510..1291 | 100 | -> | Plus |
arm_X | 680602..680842 | 1292..1532 | 100 | -> | Plus |
arm_X | 680907..681055 | 1533..1681 | 100 | -> | Plus |
arm_X | 681119..681557 | 1682..2120 | 100 | -> | Plus |
arm_X | 681672..681865 | 2121..2314 | 99 | | Plus |
BS09874.pep Sequence
Translation from 16 to 2313
> BS09874.pep
MAASVVKTPKCPRRGSVKDVAQNAPRTAPTSSKEANWNWWLLLATVFLVT
FATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSG
YLTGYNGTFPFEKPGDKYNETRYQGMRYFCTTLGALIMPMGFDTVYDLTR
SHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVSKSTA
SGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILG
DLGQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYS
SAFQSRLIGNSLYNASMPRDVAYGSLVTIKNHKTGGGYLHSHHHLYPKGS
GARQQQVTTYTHKDENNKWLIRPHNKPGPPKGKVQILRHGDLVRLTHMAT
RRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVHT
VTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRDKNSQWNVED
NEHKLMPSVSFSVYAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQW
PINYRGQFFSGSSYRIYLLGNPLIWWSNLVFLALFVTVFLCNAVVQQRRA
GFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAVPSG
SPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLL
TGVMYNYILRVLPKWIHHVILGLVLSILVYSFAAFSPLAYGMSGPLANEP
NSTMYNLKWLSTWEF*
BS09874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tw-PA | 765 | CG12311-PA | 1..765 | 1..765 | 4125 | 100 | Plus |
tw-PB | 765 | CG12311-PB | 1..765 | 1..765 | 4125 | 100 | Plus |
rt-PA | 886 | CG6097-PA | 179..753 | 45..598 | 677 | 30 | Plus |
CG11999-PA | 216 | CG11999-PA | 44..139 | 339..438 | 161 | 38.6 | Plus |