Clone BS09874 Report

Search the DGRC for BS09874

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:74
Vector:pDNR-Dual
Associated Gene/Transcripttw-RA
Protein status:BS09874.pep: full length peptide match
Sequenced Size:2330

Clone Sequence Records

BS09874.3prime Sequence

936 bp (790 high quality bases) assembled on 2006-04-19

> BS09874.3prime
ATGGTCTAGAAAGCTTCTAGAATTCCCAGGTAGAAAGCCACTTGAGATTG
TACATTGTAGAGTTCGGCTCGTTGGCTAGAGGACCACTCATTCCGTAAGC
AAGTGGCGAGAAGGCGGCAAAACTATACACCAGGATCGAGAGAACCAGTC
CGAGGATAACGTGGTGAATCCATTTGGGCAGAACCCTCAAAATGTAGTTG
TACATAACGCCCGTCAGCAAGGAGTTGAAGATCAAGGCCGGAAAATAGTG
GTGGAAGTAGAGCACCCGTCCCATCGCCCAGAAGGGCAAATAGTGGAGCA
TCCAGCCCAGAAAAAGCCAGGCGGCCGCCCTTAAGGACTGCGCCGGGTTG
GGTGCCTCCGGGGACCCACTGGGAACTGCCTTTGGGACTATCTCCTTCGC
CGGAGTACAACAACTGCAGATGTCCGTGGTGGAGTGCTCACTCTCCTCGT
CCTGGGCCACTGTTTCCGAATCGGGAACTTGGGCTTGATTTTGGGCCGCC
GATCGGGCGAAGCCAGCTCTTCTTTGCTGAACAACTGCGTTGCACAGGAA
AACCGTGACGAAAAGGGCCAGGAAAACCAGATTACTCCACCAAATCAACG
GGTTTCCCAGCAAGTAGATGCGGTAACTGCTGCCGGAGAAGAACTGGCCC
CTGTAGTTGATTGGCCACTGCCAGGGTCTGCTGGTGACCTCGCCTTCTTT
GGGCTTGAGTCCTGCGTTTCCCTGCAGCATTACGGCGTGGGATTCGAGGA
AGCGGGCAAAGAAGCCGGGCGCATACACGCTAAAGCTTACACTGGGCATC
AACTTGTGCTCGTTGTCCTCGACGTTCCACTGCGAGTTCTTGTCGCGCAC
GTTGGGATTGCATGACACCTCCTGCTGTTCGAACCCCCATTTCGGTAGCT
GCTTCCCACTGGAGGTCAGGGCGCAGTTCTGCAGCA

BS09874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12311-PA 2298 Pomt2-RA 1379..2298 936..17 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 1538..2457 936..17 4585 99.9 Minus
tw-RB 2840 CG12311-RB 1538..2457 936..17 4585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 787085..787525 650..210 2205 100 Minus
X 23542271 X 787638..787832 211..17 960 99.5 Minus
X 23542271 X 786874..787023 798..649 750 100 Minus
X 23542271 X 786672..786809 936..799 690 100 Minus
Blast to na_te.dros performed on 2015-02-03 15:54:39 has no hits.

BS09874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:31 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomt2-PA 1380..2298 17..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:55 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12311-PA 1380..2298 17..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:22:08 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 1539..2459 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:49:47 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 1539..2459 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:49:47 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
X 786673..786809 799..935 100 -> Minus
X 786874..787022 650..798 100 -> Minus
X 787086..787524 211..649 100 -> Minus
X 787639..787834 11..210 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:22:08 Download gff for BS09874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 680706..680842 799..935 100 -> Minus
arm_X 680907..681055 650..798 100 -> Minus
arm_X 681119..681557 211..649 100 -> Minus
arm_X 681672..681867 11..210 97   Minus

BS09874.5prime Sequence

969 bp (866 high quality bases) assembled on 2006-04-19

> BS09874.5prime
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGCAACGG
AGATGGGTTCTATAGTTCGGGCCTTCAGTCCAAGCTGATCGGCAACTCCC
TATATAATGCAAGCATGCC

BS09874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12311-PA 2298 Pomt2-RA 1..953 17..969 4665 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 160..1112 17..969 4705 99.6 Plus
tw-RB 2840 CG12311-RB 160..1112 17..969 4705 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 785716..786176 509..969 2245 99.1 Plus
X 23542271 X 784905..785015 17..127 555 100 Plus
X 23542271 X 785547..785655 401..509 545 100 Plus
X 23542271 X 785386..785492 294..400 535 100 Plus
X 23542271 X 785233..785318 210..295 430 100 Plus
X 23542271 X 785089..785173 126..210 425 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:41:31 has no hits.

BS09874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:32 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomt2-PA 1..953 17..969 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:56 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12311-PA 1..953 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:02 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..1112 17..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:46 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..1112 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:46 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
X 784905..785014 17..126 100 -> Plus
X 785090..785173 127..210 100 -> Plus
X 785234..785318 211..295 100 -> Plus
X 785388..785492 296..400 100 -> Plus
X 785547..785655 401..509 100 -> Plus
X 785717..786176 510..969 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:02 Download gff for BS09874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 678938..679047 17..126 100 -> Plus
arm_X 679123..679206 127..210 100 -> Plus
arm_X 679267..679351 211..295 100 -> Plus
arm_X 679421..679525 296..400 100 -> Plus
arm_X 679580..679688 401..509 100 -> Plus
arm_X 679750..680209 510..969 99   Plus

BS09874.complete Sequence

2330 bp assembled on 2008-08-14

GenBank Submission: FJ636496

> BS09874.complete
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGCAACGG
AGATGGGTTCTATAGTTCGGCCTTTCAGTCCAGGCTGATCGGCAACTCCC
TATATAATGCCAGCATGCCCAGAGATGTCGCCTACGGATCGCTAGTGACA
ATCAAGAACCACAAGACGGGCGGAGGCTACCTGCACTCGCATCATCACCT
GTATCCCAAGGGATCTGGCGCTAGGCAGCAGCAGGTTACCACTTACACCC
ACAAGGACGAGAACAACAAGTGGCTAATCAGGCCGCACAACAAGCCGGGT
CCACCAAAGGGCAAGGTACAGATCCTCCGGCACGGGGACCTCGTCCGCCT
GACTCACATGGCGACCAGGAGAAATCTGCATTCCCACAACGAACCTGCAC
CCATGACCAAGAAGCATTTGCAGGTCACAGGCTATGGCGAGTTGGGACTA
GGCGATGCCAACGACGTCTGGCGCGTGTTGATTGTGGGCGGCAAGGTCAA
CGAAACGGTACACACGGTCACTTCCCGTCTCAAGTTCATCCACCTGCTGC
AGAACTGCGCCCTGACCTCCAGTGGGAAGCAGCTACCGAAATGGGGGTTC
GAACAGCAGGAGGTGTCATGCAATCCCAACGTGCGCGACAAGAACTCGCA
GTGGAACGTCGAGGACAACGAGCACAAGTTGATGCCCAGTGTAAGCTTTA
GCGTGTATGCGCCCGGCTTCTTTGCCCGCTTCCTCGAATCCCACGCCGTA
ATGCTGCAGGGAAACGCAGGACTCAAGCCCAAAGAAGGCGAGGTCACCAG
CAGACCCTGGCAGTGGCCAATCAACTACAGGGGCCAGTTCTTCTCCGGCA
GCAGTTACCGCATCTACTTGCTGGGAAACCCGTTGATTTGGTGGAGTAAT
CTGGTTTTCCTGGCCCTTTTCGTCACGGTTTTCCTGTGCAACGCAGTTGT
TCAGCAAAGAAGAGCTGGCTTCGCCCGATCGGCGGCCCAAAATCAAGCCC
AAGTTCCCGATTCGGAAACAGTGGCCCAGGACGAGGAGAGTGAGCACTCC
ACCACGGACATCTGCAGTTGTTGTACTCCGGCGAAGGAGATAGTCCCAAA
GGCAGTTCCCAGTGGGTCCCCGGAGGCACCCAACCCGGCGCAGTCCTTAA
GGGCGGCCGCCTGGCTTTTTCTGGGCTGGATGCTCCACTATTTGCCCTTC
TGGGCGATGGGACGGGTGCTCTACTTCCACCACTATTTTCCGGCCTTGAT
CTTCAACTCCTTGCTGACGGGCGTTATGTACAACTACATTTTGAGGGTTC
TGCCCAAATGGATTCACCACGTTATCCTCGGACTGGTTCTCTCGATCCTG
GTGTATAGTTTTGCCGCCTTCTCGCCACTTGCTTACGGAATGAGTGGTCC
TCTAGCCAACGAGCCGAACTCTACAATGTACAATCTCAAGTGGCTTTCTA
CCTGGGAATTCTAGAAGCTTTCTAGACCAT

BS09874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2298 CG12311-PA 1..2298 17..2314 11475 100 Plus
tw-RB 2298 CG12311-PB 1..2298 17..2314 11475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 160..2457 17..2314 11475 100 Plus
tw-RB 2840 CG12311-RB 160..2457 17..2314 11475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 785716..786498 509..1291 3915 100 Plus
X 23542271 X 787085..787525 1681..2121 2205 100 Plus
X 23542271 X 786567..786809 1290..1532 1215 100 Plus
X 23542271 X 787638..787832 2120..2314 960 99.5 Plus
X 23542271 X 786874..787023 1533..1682 750 100 Plus
X 23542271 X 784905..785015 17..127 555 100 Plus
X 23542271 X 785547..785655 401..509 545 100 Plus
X 23542271 X 785386..785492 294..400 535 100 Plus
X 23542271 X 785233..785318 210..295 430 100 Plus
X 23542271 X 785089..785173 126..210 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:21:59 has no hits.

BS09874.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:02 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RA 115..2414 17..2320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:39 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..2457 17..2314 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:23 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RA 115..2412 17..2314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:07 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..2457 17..2314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:07 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
X 784905..785014 17..126 100 -> Plus
X 785090..785173 127..210 100 -> Plus
X 785234..785318 211..295 100 -> Plus
X 785388..785492 296..400 100 -> Plus
X 785547..785655 401..509 100 -> Plus
X 785717..786498 510..1291 100 -> Plus
X 786569..786809 1292..1532 100 -> Plus
X 786874..787022 1533..1681 100 -> Plus
X 787086..787524 1682..2120 100 -> Plus
X 787639..787832 2121..2314 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:39 Download gff for BS09874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 678938..679047 17..126 100 -> Plus
arm_X 679123..679206 127..210 100 -> Plus
arm_X 679267..679351 211..295 100 -> Plus
arm_X 679421..679525 296..400 100 -> Plus
arm_X 679580..679688 401..509 100 -> Plus
arm_X 679750..680531 510..1291 100 -> Plus
arm_X 680602..680842 1292..1532 100 -> Plus
arm_X 680907..681055 1533..1681 100 -> Plus
arm_X 681119..681557 1682..2120 100 -> Plus
arm_X 681672..681865 2121..2314 99   Plus

BS09874.pep Sequence

Translation from 16 to 2313

> BS09874.pep
MAASVVKTPKCPRRGSVKDVAQNAPRTAPTSSKEANWNWWLLLATVFLVT
FATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSG
YLTGYNGTFPFEKPGDKYNETRYQGMRYFCTTLGALIMPMGFDTVYDLTR
SHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVSKSTA
SGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILG
DLGQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYS
SAFQSRLIGNSLYNASMPRDVAYGSLVTIKNHKTGGGYLHSHHHLYPKGS
GARQQQVTTYTHKDENNKWLIRPHNKPGPPKGKVQILRHGDLVRLTHMAT
RRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVHT
VTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRDKNSQWNVED
NEHKLMPSVSFSVYAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQW
PINYRGQFFSGSSYRIYLLGNPLIWWSNLVFLALFVTVFLCNAVVQQRRA
GFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAVPSG
SPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLL
TGVMYNYILRVLPKWIHHVILGLVLSILVYSFAAFSPLAYGMSGPLANEP
NSTMYNLKWLSTWEF*

BS09874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
tw-PA 765 CG12311-PA 1..765 1..765 4125 100 Plus
tw-PB 765 CG12311-PB 1..765 1..765 4125 100 Plus
rt-PA 886 CG6097-PA 179..753 45..598 677 30 Plus
CG11999-PA 216 CG11999-PA 44..139 339..438 161 38.6 Plus