Clone BS09875 Report

Search the DGRC for BS09875

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG5068-RA
Protein status:BS09875.pep: full length peptide match
Sequenced Size:1262

Clone Sequence Records

BS09875.5prime Sequence

885 bp (807 high quality bases) assembled on 2006-04-19

> BS09875.5prime
GAAGTTATCAGTCGACATGTCGAGTTTACAGCGCACGATGTTGAAGGGCA
AGCTGCCACCCACAATTCCTGGCGGGCGCATTGGCAGAGCGGACTCGTTC
AAGAAGTCGCGCATTCGCGACTACAAGCCGGGCATGTGGAACGAATTCTT
TGCGGAGAAGGAGGACGTCACGGTGGATGAGCAACGCACCTTCCGCATCT
ATCGCACCAAGCAACCGGAGAAGCCGGGTCCAGTTCTCCTTCTGCTCCAC
GGCGGTGGCTACTCTGCCCTCACCTGGGCGCACTTTTGTTCTGAGGTGAC
CAGCATGATCCACTGCCAGTGCCTGTGCATCGATATGCGAGGTCATGGGG
ACAGCAAGGTGGACGACGAGGACGATCTCTCCGCTGATACGTTGGCTAAG
GACATCGGTGACTTAATCCTGAAGCTCTATCCTGAAGAAGTGCCGCAGCT
TTTTGTGGTTGGCCACTCGATGGGCGGCGCCATCGCCGTCCACTTTGCCC
ACATGGCTCTGGTGCCCAATTTGATTGGAATAACCGTCATCGATGTTGTG
GAGGGCACAGCCATGGAGGCACTAGCCAGCATGCAGAGCTTTCTGCGCTC
CCGTCCAAAGTATTTCCAGAGTATTCCGAATGCTATCGAGTGGTGCATCC
GAAGCGGCCAAGTGCGCAATGTGGACAGCGCCAAAGTGTCCATGCCGGGA
CAGATAATAAATTGTACAACGAACAAACTGGCAACGAATGATCTGCCATT
ACCAGATGATGTATTGGAGGAGGCCCACCACAACAGTATGTTTCCCAATC
CGTTTAGCATTTCGGAGGATGAAGAATCGTCACCGCCGGGCGATGACGCC
GCCGATGGCTCCTCAGAAAGTGCCGCAGCTGGCGC

BS09875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-PA 1230 CG5068-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-RB 1845 CG5068-RB 176..1044 17..885 4345 100 Plus
CG5068-RA 1592 CG5068-RA 176..1044 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8987732..8988043 400..711 1560 100 Plus
3L 28110227 3L 8987027..8987225 91..289 995 100 Plus
3L 28110227 3L 8988099..8988272 712..885 870 100 Plus
3L 28110227 3L 8987285..8987395 290..400 555 100 Plus
3L 28110227 3L 8986885..8986959 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:29:13 has no hits.

BS09875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:33 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5068-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:36:58 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5068-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:21 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 167..1044 7..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:16 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 167..1044 7..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:16 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8987732..8988043 400..711 100 -> Plus
3L 8988099..8988272 712..885 100   Plus
3L 8986876..8986958 7..90 95 -> Plus
3L 8987027..8987225 91..289 100 -> Plus
3L 8987285..8987394 290..399 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:21 Download gff for BS09875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8979976..8980058 7..90 95 -> Plus
arm_3L 8980127..8980325 91..289 100 -> Plus
arm_3L 8980385..8980494 290..399 100 -> Plus
arm_3L 8980832..8981143 400..711 100 -> Plus
arm_3L 8981199..8981372 712..885 100   Plus

BS09875.complete Sequence

1262 bp assembled on 2008-08-14

GenBank Submission: FJ636497

> BS09875.complete
GAAGTTATCAGTCGACATGTCGAGTTTACAGCGCACGATGTTGAAGGGCA
AGCTGCCACCCACAATTCCTGGCGGGCGCATTGGCAGAGCGGACTCGTTC
AAGAAGTCGCGCATTCGCGACTACAAGCCGGGCATGTGGAACGAATTCTT
TGCGGAGAAGGAGGACGTCACGGTGGATGAGCAACGCACCTTCCGCATCT
ATCGCACCAAGCAACCGGAGAAGCCGGGTCCAGTTCTCCTTCTGCTCCAC
GGCGGTGGCTACTCTGCCCTCACCTGGGCGCACTTTTGTTCTGAGGTGAC
CAGCATGATCCACTGCCAGTGCCTGTGCATCGATATGCGAGGTCATGGGG
ACAGCAAGGTGGACGACGAGGACGATCTCTCCGCTGATACGTTGGCTAAG
GACATCGGTGACTTAATCCTGAAGCTCTATCCTGAAGAAGTGCCGCAGCT
TTTTGTGGTTGGCCACTCGATGGGCGGCGCCATCGCCGTCCACTTTGCCC
ACATGGCTCTGGTGCCCAATTTGATTGGAATAACCGTCATCGATGTTGTG
GAGGGCACAGCCATGGAGGCACTAGCCAGCATGCAGAGCTTTCTGCGCTC
CCGTCCAAAGTATTTCCAGAGTATTCCGAATGCTATCGAGTGGTGCATCC
GAAGCGGCCAAGTGCGCAATGTGGACAGCGCCAAAGTGTCCATGCCGGGA
CAGATAATAAATTGTACAACGAACAAACTGGCAACGAATGATCTGCCATT
ACCAGATGATGTATTGGAGGAGGCCCACCACAACAGTATGTTTCCCAATC
CGTTTAGCATTTCGGAGGATGAAGAATCGTCACCGCCGGGCGATGACGCC
GCCGATGGCTCCTCAGAAAGTGCCGCAGCTGGCGCGGATTTCAAGAAGCC
CAACACGACCAAATCGACAACCGAAGCGGCCAAAAATTACACCTGGCGCA
TTGATCTGTCCAAGTCGGAGAAGTACTGGGTGGGCTGGTTTTCGGGGCTG
AGCGATAAGTTCCTTAACTTGCGCCTGCCCAAGCAACTACTCCTCGCCAG
CATCGATGGACTGGACCGCACCCTGACTGTTGGCCAGATGCAGGGTCGCT
TCCAGATGCAGGTCTTGGCCCGCTGCGGTCACGCCGTGCACGAGGACCGT
CCACACGAGGTGGCTGAGGTGATTAGCGGCTACTTGATCCGGAATCGGTT
TGCAGAAGCAGCCAGCGAATTTCGTTGCCACATGCCGTCGTGCTAAAAGC
TTTCTAGACCAT

BS09875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-RB 1230 CG5068-PB 1..1230 17..1246 6150 100 Plus
CG5068-RA 1230 CG5068-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-RB 1845 CG5068-RB 176..1406 17..1247 6155 100 Plus
CG5068-RA 1592 CG5068-RA 176..1406 17..1247 6155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8987732..8988043 400..711 1560 100 Plus
3L 28110227 3L 8988386..8988696 937..1247 1555 100 Plus
3L 28110227 3L 8988099..8988327 712..940 1130 99.6 Plus
3L 28110227 3L 8987027..8987225 91..289 995 100 Plus
3L 28110227 3L 8987285..8987395 290..400 555 100 Plus
3L 28110227 3L 8986885..8986959 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:11:46 has no hits.

BS09875.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:01 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 165..1404 7..1247 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:23 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 176..1403 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:06 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 174..1401 17..1244 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:28 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 176..1403 17..1244 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:28 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8986885..8986958 17..90 100 -> Plus
3L 8987027..8987225 91..289 100 -> Plus
3L 8987285..8987394 290..399 100 -> Plus
3L 8987732..8988043 400..711 100 -> Plus
3L 8988099..8988323 712..936 100 -> Plus
3L 8988386..8988693 937..1244 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:23 Download gff for BS09875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8981486..8981793 937..1244 100   Plus
arm_3L 8979985..8980058 17..90 100 -> Plus
arm_3L 8980127..8980325 91..289 100 -> Plus
arm_3L 8980385..8980494 290..399 100 -> Plus
arm_3L 8980832..8981143 400..711 100 -> Plus
arm_3L 8981199..8981423 712..936 100 -> Plus

BS09875.pep Sequence

Translation from 16 to 1245

> BS09875.pep
MSSLQRTMLKGKLPPTIPGGRIGRADSFKKSRIRDYKPGMWNEFFAEKED
VTVDEQRTFRIYRTKQPEKPGPVLLLLHGGGYSALTWAHFCSEVTSMIHC
QCLCIDMRGHGDSKVDDEDDLSADTLAKDIGDLILKLYPEEVPQLFVVGH
SMGGAIAVHFAHMALVPNLIGITVIDVVEGTAMEALASMQSFLRSRPKYF
QSIPNAIEWCIRSGQVRNVDSAKVSMPGQIINCTTNKLATNDLPLPDDVL
EEAHHNSMFPNPFSISEDEESSPPGDDAADGSSESAAAGADFKKPNTTKS
TTEAAKNYTWRIDLSKSEKYWVGWFSGLSDKFLNLRLPKQLLLASIDGLD
RTLTVGQMQGRFQMQVLARCGHAVHEDRPHEVAEVISGYLIRNRFAEAAS
EFRCHMPSC*

BS09875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-PB 409 CG5068-PB 1..409 1..409 2159 100 Plus
CG5068-PA 409 CG5068-PA 1..409 1..409 2159 100 Plus