Clone BS09888 Report

Search the DGRC for BS09888

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG1902-RA
Protein status:BS09888.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09888.3prime Sequence

785 bp (713 high quality bases) assembled on 2006-04-19

> BS09888.3prime
ATGGTCTAGAAAGCTTTCAATCGAAGTTAATCATTCGGAAGGTTCCGTCG
TTCGGAACGTCGGTTACTAACGGAGCACCCCTTTCCTGATCCTTCTCACT
GGCTTCCCGCAATTTCTCATCCACGCCATATCGCTCGTCTTCCGTGAAGT
ACGGGGAAAAGCTTAGCAGCTGGGTCTCGTAGCGCGTCATTGCATCAGAC
AAAGATCCATTATCGCCGCCCATTTCCACGGGTAAATACTCCAATCCAAT
TGCCTTTCGCAGAGACGCGACGGTGGAGTGAATGTGCAACAGCTCCTTTT
GCTTCATGACATTCCGAACCAGTCCAAGGACAAACTGCGTCTCCCTGGAT
GCATTGACAATGTGCGTGGCCACTAAATTCGCTGGAATTCCATGCTCTAG
GAATGCATTCATCCGCTTGAACATGCCAGGATCGAACTGCAGTAGCAGAG
AGTAGGGTATCTTGGTGAAGTCGATGATCTCCACCACGCCGGCTATGTTC
CAGTTGTCGTCCGTGTTGATCTCGATCTCAGCGCGAAAAGCGTGGAAGCG
GAAAATGTCGCTGACACTGTGCTTGGAAGGTTCAATGTGACCCATTCGTG
TGTAGTGGATGCGGGGGCCACCAGGGCCAATAGGTTTGGGCAATGTGGCG
AATATTCCTGAACGAGCCAGTTCTATCAGCTTATCGTCCACCTGGCGACC
CTTGAGCAGTTCTCTTTCCTTTGATTTGTAGGTGTAGTAGAAGAATACCC
TCTTCTTGGCCTCCTCTACGTCCCCAGCGGCAGAA

BS09888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PA 939 CG1902-RA 182..939 774..17 3765 99.8 Minus
CG1902-PC 939 CG1902-RC 182..939 774..17 3765 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 333..1100 785..17 3805 99.7 Minus
CG1902-RA 1749 CG1902-RA 300..1067 785..17 3805 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 657..290 1840 100 Minus
2R 25286936 2R 9604669..9604942 290..17 1370 100 Minus
2R 25286936 2R 9604053..9604180 785..657 580 98.4 Minus
Blast to na_te.dros performed on 2015-02-11 10:36:29 has no hits.

BS09888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:58 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 174..939 17..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:30 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 174..939 17..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:36 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 300..1067 17..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:26 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 300..1067 17..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:26 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9604053..9604180 657..785 98 -> Minus
2R 9604245..9604611 290..656 100 -> Minus
2R 9604670..9604942 17..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:36 Download gff for BS09888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491558..5491685 657..785 98 -> Minus
arm_2R 5491750..5492116 290..656 100 -> Minus
arm_2R 5492175..5492447 17..289 100   Minus

BS09888.5prime Sequence

804 bp (803 high quality bases) assembled on 2006-04-19

> BS09888.5prime
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCT

BS09888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PA 939 CG1902-RA 1..788 17..804 3940 100 Plus
CG1902-PC 939 CG1902-RC 1..788 17..804 3940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 161..949 16..804 3945 100 Plus
CG1902-RA 1749 CG1902-RA 128..916 16..804 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 315..682 1840 100 Plus
2R 25286936 2R 9603881..9604180 16..315 1500 100 Plus
2R 25286936 2R 9604669..9604791 682..804 615 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:58:10 has no hits.

BS09888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:59 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 1..788 17..804 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:31 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 1..788 17..804 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:12:23 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 117..916 5..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:30 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 117..916 5..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:30 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9603870..9604180 5..315 98 -> Plus
2R 9604245..9604611 316..682 100 -> Plus
2R 9604670..9604791 683..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:12:23 Download gff for BS09888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491375..5491685 5..315 98 -> Plus
arm_2R 5491750..5492116 316..682 100 -> Plus
arm_2R 5492175..5492296 683..804 100   Plus

BS09888.complete Sequence

971 bp (971 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636499

> BS09888.complete
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAGCCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTCCGAACGACGGAACCTTCCGAATGATTAACTTCG
ATTGAAAGCTTTCTAGACCAT

BS09888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 939 CG1902-PC 1..939 17..955 4695 100 Plus
CG1902-RA 939 CG1902-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 161..1100 16..955 4700 100 Plus
CG1902-RA 1749 CG1902-RA 128..1067 16..955 4700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 315..682 1840 100 Plus
2R 25286936 2R 9603881..9604180 16..315 1500 100 Plus
2R 25286936 2R 9604669..9604942 682..955 1370 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:57:58 has no hits.

BS09888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:05 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 1..939 17..955 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:58 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 148..1098 5..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:27 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 129..1066 17..954 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:06 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 148..1098 5..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:15 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 129..1066 17..954 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:15 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9603882..9604180 17..315 100 -> Plus
2R 9604245..9604611 316..682 100 -> Plus
2R 9604670..9604941 683..954 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:27 Download gff for BS09888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491387..5491685 17..315 100 -> Plus
arm_2R 5491750..5492116 316..682 100 -> Plus
arm_2R 5492175..5492446 683..954 100   Plus

BS09888.pep Sequence

Translation from 16 to 954

> BS09888.pep
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFD*

BS09888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PC 312 CG1902-PC 1..312 1..312 1613 100 Plus
CG1902-PA 312 CG1902-PA 1..312 1..312 1613 100 Plus
CG30339-PA 308 CG30339-PA 1..308 1..312 564 38.6 Plus
CG12926-PA 313 CG12926-PA 9..313 4..312 530 37.1 Plus
CG33966-PA 310 CG33966-PA 1..310 1..312 491 34.8 Plus