Clone Sequence Records
BS09888.3prime Sequence
785 bp (713 high quality bases) assembled on 2006-04-19
> BS09888.3prime
ATGGTCTAGAAAGCTTTCAATCGAAGTTAATCATTCGGAAGGTTCCGTCG
TTCGGAACGTCGGTTACTAACGGAGCACCCCTTTCCTGATCCTTCTCACT
GGCTTCCCGCAATTTCTCATCCACGCCATATCGCTCGTCTTCCGTGAAGT
ACGGGGAAAAGCTTAGCAGCTGGGTCTCGTAGCGCGTCATTGCATCAGAC
AAAGATCCATTATCGCCGCCCATTTCCACGGGTAAATACTCCAATCCAAT
TGCCTTTCGCAGAGACGCGACGGTGGAGTGAATGTGCAACAGCTCCTTTT
GCTTCATGACATTCCGAACCAGTCCAAGGACAAACTGCGTCTCCCTGGAT
GCATTGACAATGTGCGTGGCCACTAAATTCGCTGGAATTCCATGCTCTAG
GAATGCATTCATCCGCTTGAACATGCCAGGATCGAACTGCAGTAGCAGAG
AGTAGGGTATCTTGGTGAAGTCGATGATCTCCACCACGCCGGCTATGTTC
CAGTTGTCGTCCGTGTTGATCTCGATCTCAGCGCGAAAAGCGTGGAAGCG
GAAAATGTCGCTGACACTGTGCTTGGAAGGTTCAATGTGACCCATTCGTG
TGTAGTGGATGCGGGGGCCACCAGGGCCAATAGGTTTGGGCAATGTGGCG
AATATTCCTGAACGAGCCAGTTCTATCAGCTTATCGTCCACCTGGCGACC
CTTGAGCAGTTCTCTTTCCTTTGATTTGTAGGTGTAGTAGAAGAATACCC
TCTTCTTGGCCTCCTCTACGTCCCCAGCGGCAGAA
BS09888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PA | 939 | CG1902-RA | 182..939 | 774..17 | 3765 | 99.8 | Minus |
CG1902-PC | 939 | CG1902-RC | 182..939 | 774..17 | 3765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 333..1100 | 785..17 | 3805 | 99.7 | Minus |
CG1902-RA | 1749 | CG1902-RA | 300..1067 | 785..17 | 3805 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 657..290 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 9604669..9604942 | 290..17 | 1370 | 100 | Minus |
2R | 25286936 | 2R | 9604053..9604180 | 785..657 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:36:29 has no hits.
BS09888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:58 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 174..939 | 17..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:30 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 174..939 | 17..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:36 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 300..1067 | 17..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:26 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 300..1067 | 17..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:26 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9604053..9604180 | 657..785 | 98 | -> | Minus |
2R | 9604245..9604611 | 290..656 | 100 | -> | Minus |
2R | 9604670..9604942 | 17..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:36 Download gff for
BS09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491558..5491685 | 657..785 | 98 | -> | Minus |
arm_2R | 5491750..5492116 | 290..656 | 100 | -> | Minus |
arm_2R | 5492175..5492447 | 17..289 | 100 | | Minus |
BS09888.5prime Sequence
804 bp (803 high quality bases) assembled on 2006-04-19
> BS09888.5prime
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCT
BS09888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PA | 939 | CG1902-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
CG1902-PC | 939 | CG1902-RC | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 161..949 | 16..804 | 3945 | 100 | Plus |
CG1902-RA | 1749 | CG1902-RA | 128..916 | 16..804 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 315..682 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 9603881..9604180 | 16..315 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 9604669..9604791 | 682..804 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:58:10 has no hits.
BS09888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:22:59 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:31 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:12:23 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 117..916 | 5..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:30 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 117..916 | 5..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:30 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9603870..9604180 | 5..315 | 98 | -> | Plus |
2R | 9604245..9604611 | 316..682 | 100 | -> | Plus |
2R | 9604670..9604791 | 683..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:12:23 Download gff for
BS09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491375..5491685 | 5..315 | 98 | -> | Plus |
arm_2R | 5491750..5492116 | 316..682 | 100 | -> | Plus |
arm_2R | 5492175..5492296 | 683..804 | 100 | | Plus |
BS09888.complete Sequence
971 bp (971 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636499
> BS09888.complete
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAGCCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTCCGAACGACGGAACCTTCCGAATGATTAACTTCG
ATTGAAAGCTTTCTAGACCAT
BS09888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 939 | CG1902-PC | 1..939 | 17..955 | 4695 | 100 | Plus |
CG1902-RA | 939 | CG1902-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 161..1100 | 16..955 | 4700 | 100 | Plus |
CG1902-RA | 1749 | CG1902-RA | 128..1067 | 16..955 | 4700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 315..682 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 9603881..9604180 | 16..315 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 9604669..9604942 | 682..955 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:57:58 has no hits.
BS09888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:05 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:58 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 148..1098 | 5..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:27 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 129..1066 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:06 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 148..1098 | 5..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:15 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 129..1066 | 17..954 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:15 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9603882..9604180 | 17..315 | 100 | -> | Plus |
2R | 9604245..9604611 | 316..682 | 100 | -> | Plus |
2R | 9604670..9604941 | 683..954 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:27 Download gff for
BS09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491387..5491685 | 17..315 | 100 | -> | Plus |
arm_2R | 5491750..5492116 | 316..682 | 100 | -> | Plus |
arm_2R | 5492175..5492446 | 683..954 | 100 | | Plus |
BS09888.pep Sequence
Translation from 16 to 954
> BS09888.pep
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFD*
BS09888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PC | 312 | CG1902-PC | 1..312 | 1..312 | 1613 | 100 | Plus |
CG1902-PA | 312 | CG1902-PA | 1..312 | 1..312 | 1613 | 100 | Plus |
CG30339-PA | 308 | CG30339-PA | 1..308 | 1..312 | 564 | 38.6 | Plus |
CG12926-PA | 313 | CG12926-PA | 9..313 | 4..312 | 530 | 37.1 | Plus |
CG33966-PA | 310 | CG33966-PA | 1..310 | 1..312 | 491 | 34.8 | Plus |