Clone Sequence Records
BS09890.3prime Sequence
908 bp (839 high quality bases) assembled on 2006-04-19
> BS09890.3prime
ATGGTCTAGAAAGCTTTCATAGGTTGGTTTTCGGCCAAGCGTCCAGTGCG
TCTAAAACTATGTTATCTGACTTTTCTGGCGATTGCTTAAGTTCCGGTGG
CGGGCCCATCAAGTGGGCATATTTGGCCAAATACGGAGTCAGCAGCTCCA
TGGGCAGAGGAAAGATAATGGTGGAGTTCTTCTCGGCGGAGATGCTGCTC
AGGGTTTGCAAGTAGCGCAGCTGCAAGGCCGATGGACTGGCGGAAATGAC
ATCGGATGCCTCCTTGAGCGCTGTGGCGGACTTCTTCTCACCCTCGGCGG
CGATCACCTTGGCACGAGCATCACGAGCTGCCTCCGCTTCGGCGGCCATG
GCACGCTGCATGGAAACGGGCAGGGAGACATCCTTGATCTCAACGCGCTC
CACCATGACGCCCCACGGCTCGGTGGCCTCGTCCAACGTGGCCTGCATAT
TGTGGGCCAGGGTTTCGCGCTCGGTTAGCAGTTCGGACAGGTTGCGAGTG
CCGACGATATTACGGAGCGTGGTGGCCGCCAGGAGGCGAGTGGACATGCT
GTAGTCCTCGACCTGGATGACCGCATAAAGGGGATCACTGATGCGATAGT
AGACAACGGCGTCCACAGTGACCGTCACGGAATCCTTCGTCAGCATCTCC
TGCTGCGGCACATTGAAGGTAACCGTGCGCAGGTCCACCTTGCGGTACTC
ATCGATGCACGGCAGGATGAAGAACATGCCGGGACCACGAGCTCCGCCGC
TCAGTCTGCCCAGCCGGAAGATGATCGCCCGCTCGTACTCCGCGACCACC
TTGAAGCATATGAAGATGGCGATGGGCGATGTGATGATGAAGATCAGCAC
GGAGAACAGGGTGACCACCCATTCCATGCAGCCCTTGGGCTCGTTCTCCG
AAAGTTTG
BS09890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7635-PA | 1053 | Mec2-RA | 168..1053 | 902..17 | 4330 | 99.5 | Minus |
CG33253-PA | 1104 | CG33253-RA | 844..944 | 241..141 | 180 | 87.1 | Minus |
CG33253-PA | 1104 | CG33253-RA | 650..704 | 435..381 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 248..1133 | 902..17 | 4370 | 99.5 | Minus |
CG33253-RB | 1733 | CG33253-RB | 392..1068 | 814..141 | 1170 | 78.5 | Minus |
CG33253-RC | 2410 | CG33253-RC | 1069..1745 | 814..141 | 1170 | 78.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 900..387 | 2540 | 99.6 | Minus |
X | 23542271 | X | 19189882..19190088 | 223..17 | 1005 | 99 | Minus |
X | 23542271 | X | 19189640..19189805 | 386..221 | 830 | 100 | Minus |
X | 23542271 | X | 19185776..19186206 | 814..387 | 665 | 77.5 | Minus |
X | 23542271 | X | 19186278..19186443 | 386..221 | 245 | 76.5 | Minus |
X | 23542271 | X | 19186535..19186613 | 219..141 | 245 | 87.3 | Minus |
Blast to na_te.dros performed 2015-02-11 10:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G4 | 3856 | G4 G4_DM 3856bp | 3310..3373 | 88..26 | 118 | 70.8 | Minus |
BS09890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:02 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-PA | 162..1053 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:36 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7635-PA | 162..1053 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:22:00 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 242..1136 | 10..908 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:44 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 242..1136 | 10..908 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:44 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19189885..19190091 | 10..220 | 97 | | Minus |
X | 19189034..19189547 | 387..900 | 99 | -> | Minus |
X | 19189640..19189805 | 221..386 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:22:00 Download gff for
BS09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19083067..19083580 | 387..900 | 99 | -> | Minus |
arm_X | 19083673..19083838 | 221..386 | 100 | -> | Minus |
arm_X | 19083918..19084124 | 10..220 | 97 | | Minus |
BS09890.5prime Sequence
956 bp (899 high quality bases) assembled on 2006-04-19
> BS09890.5prime
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATT
BS09890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7635-PA | 1053 | Mec2-RA | 1..939 | 17..955 | 4570 | 99.4 | Plus |
CG33253-PA | 1104 | CG33253-RA | 844..944 | 845..945 | 180 | 87.1 | Plus |
CG33253-PA | 1104 | CG33253-RA | 650..704 | 651..705 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 81..1019 | 17..955 | 4620 | 99.5 | Plus |
CG33253-RB | 1733 | CG33253-RB | 392..1068 | 272..945 | 1170 | 78.5 | Plus |
CG33253-RC | 2410 | CG33253-RC | 1069..1745 | 272..945 | 1170 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 186..699 | 2540 | 99.6 | Plus |
X | 23542271 | X | 19189640..19189805 | 700..865 | 830 | 100 | Plus |
X | 23542271 | X | 19188115..19188283 | 17..185 | 815 | 98.8 | Plus |
X | 23542271 | X | 19185776..19186206 | 272..699 | 665 | 77.5 | Plus |
X | 23542271 | X | 19189882..19189974 | 863..955 | 450 | 98.9 | Plus |
X | 23542271 | X | 19186278..19186443 | 700..865 | 245 | 76.5 | Plus |
X | 23542271 | X | 19186535..19186613 | 867..945 | 245 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:50:45 has no hits.
BS09890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:02 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-PA | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:37 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7635-PA | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:54 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1019 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:19:44 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1019 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:19:44 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19188110..19188283 | 9..185 | 97 | -> | Plus |
X | 19189034..19189547 | 186..699 | 99 | -> | Plus |
X | 19189640..19189805 | 700..865 | 100 | -> | Plus |
X | 19189885..19189974 | 866..956 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:54 Download gff for
BS09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19082143..19082316 | 9..185 | 97 | -> | Plus |
arm_X | 19083067..19083580 | 186..699 | 99 | -> | Plus |
arm_X | 19083673..19083838 | 700..865 | 100 | -> | Plus |
arm_X | 19083918..19084007 | 866..956 | 97 | | Plus |
BS09890.complete Sequence
1085 bp (1085 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636500
> BS09890.complete
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATTTGGCCAAATATGCCCACTTGATGGGCCCGCCACCGGAACTTAAG
CAATCGCCAGAAAAGTCAGATAACATAGTTTTAGACGCACTGGACGCTTG
GCCGAAAACCAACCTATGAAAGCTTTCTAGACCAT
BS09890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1053 | CG7635-PA | 1..1053 | 17..1069 | 5175 | 99.4 | Plus |
CG33253-RB | 1245 | CG33253-PB | 268..944 | 272..945 | 1145 | 78.3 | Plus |
CG33253-RC | 909 | CG33253-PC | 73..749 | 272..945 | 1145 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 81..1133 | 17..1069 | 5175 | 99.4 | Plus |
CG33253-RB | 1733 | CG33253-RB | 392..1068 | 272..945 | 1145 | 78.3 | Plus |
CG33253-RC | 2410 | CG33253-RC | 1069..1745 | 272..945 | 1145 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 186..699 | 2540 | 99.6 | Plus |
X | 23542271 | X | 19189882..19190088 | 863..1069 | 1005 | 99 | Plus |
X | 23542271 | X | 19189640..19189805 | 700..865 | 830 | 100 | Plus |
X | 23542271 | X | 19188115..19188283 | 17..185 | 815 | 98.8 | Plus |
X | 23542271 | X | 19185776..19186206 | 272..699 | 665 | 77.5 | Plus |
X | 23542271 | X | 19186278..19186443 | 700..865 | 245 | 76.5 | Plus |
X | 23542271 | X | 19186535..19186613 | 867..945 | 245 | 87.3 | Plus |
Blast to na_te.dros performed 2014-11-27 14:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G4 | 3856 | G4 G4_DM 3856bp | 3310..3373 | 998..1060 | 118 | 70.8 | Plus |
BS09890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:47 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 1..1053 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:27 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1136 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:44 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 81..1132 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:47 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1136 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:42 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 81..1132 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:42 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19189885..19190087 | 866..1068 | 99 | | Plus |
X | 19189640..19189805 | 700..865 | 100 | -> | Plus |
X | 19188115..19188283 | 17..185 | 98 | -> | Plus |
X | 19189034..19189547 | 186..699 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:44 Download gff for
BS09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19082148..19082316 | 17..185 | 98 | -> | Plus |
arm_X | 19083067..19083580 | 186..699 | 99 | -> | Plus |
arm_X | 19083673..19083838 | 700..865 | 100 | -> | Plus |
arm_X | 19083918..19084120 | 866..1068 | 99 | | Plus |
BS09890.pep Sequence
Translation from 16 to 1068
> BS09890.pep
MEPHQDSPVYANYEDMRNSGPASSTAYMVNMGAAGMAPEPALRVPGTTQQ
YRGFKTSENEPKGCMEWVVTLFSVLIFIITSPIAIFICFKVVAEYERAII
FRLGRLSGGARGPGMFFILPCIDEYRKVDLRTVTFNVPQQEMLTKDSVTV
TVDAVVYYRISDPLYAVIQVEDYSMSTRLLAATTLRNIVGTRNLSELLTE
RETLAHNMQATLDEATEPWGVMVERVEIKDVSLPVSMQRAMAAEAEAARD
ARAKVIAAEGEKKSATALKEASDVISASPSALQLRYLQTLSSISAEKNST
IIFPLPMELLTPYLAKYAHLMGPPPELKQSPEKSDNIVLDALDAWPKTNL
*
BS09890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-PA | 350 | CG7635-PA | 1..350 | 1..350 | 1769 | 100 | Plus |
CG33253-PA | 367 | CG33253-PA | 49..324 | 45..319 | 1064 | 76.1 | Plus |
CG33253-PB | 414 | CG33253-PB | 49..324 | 45..319 | 1064 | 76.1 | Plus |
CG33253-PC | 302 | CG33253-PC | 2..259 | 63..319 | 1023 | 78.3 | Plus |
CG42540-PH | 393 | CG42540-PH | 16..343 | 13..333 | 857 | 55.5 | Plus |