Clone BS09890 Report

Search the DGRC for BS09890

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptMec2-RA
Protein status:BS09890.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09890.3prime Sequence

908 bp (839 high quality bases) assembled on 2006-04-19

> BS09890.3prime
ATGGTCTAGAAAGCTTTCATAGGTTGGTTTTCGGCCAAGCGTCCAGTGCG
TCTAAAACTATGTTATCTGACTTTTCTGGCGATTGCTTAAGTTCCGGTGG
CGGGCCCATCAAGTGGGCATATTTGGCCAAATACGGAGTCAGCAGCTCCA
TGGGCAGAGGAAAGATAATGGTGGAGTTCTTCTCGGCGGAGATGCTGCTC
AGGGTTTGCAAGTAGCGCAGCTGCAAGGCCGATGGACTGGCGGAAATGAC
ATCGGATGCCTCCTTGAGCGCTGTGGCGGACTTCTTCTCACCCTCGGCGG
CGATCACCTTGGCACGAGCATCACGAGCTGCCTCCGCTTCGGCGGCCATG
GCACGCTGCATGGAAACGGGCAGGGAGACATCCTTGATCTCAACGCGCTC
CACCATGACGCCCCACGGCTCGGTGGCCTCGTCCAACGTGGCCTGCATAT
TGTGGGCCAGGGTTTCGCGCTCGGTTAGCAGTTCGGACAGGTTGCGAGTG
CCGACGATATTACGGAGCGTGGTGGCCGCCAGGAGGCGAGTGGACATGCT
GTAGTCCTCGACCTGGATGACCGCATAAAGGGGATCACTGATGCGATAGT
AGACAACGGCGTCCACAGTGACCGTCACGGAATCCTTCGTCAGCATCTCC
TGCTGCGGCACATTGAAGGTAACCGTGCGCAGGTCCACCTTGCGGTACTC
ATCGATGCACGGCAGGATGAAGAACATGCCGGGACCACGAGCTCCGCCGC
TCAGTCTGCCCAGCCGGAAGATGATCGCCCGCTCGTACTCCGCGACCACC
TTGAAGCATATGAAGATGGCGATGGGCGATGTGATGATGAAGATCAGCAC
GGAGAACAGGGTGACCACCCATTCCATGCAGCCCTTGGGCTCGTTCTCCG
AAAGTTTG

BS09890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7635-PA 1053 Mec2-RA 168..1053 902..17 4330 99.5 Minus
CG33253-PA 1104 CG33253-RA 844..944 241..141 180 87.1 Minus
CG33253-PA 1104 CG33253-RA 650..704 435..381 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 248..1133 902..17 4370 99.5 Minus
CG33253-RB 1733 CG33253-RB 392..1068 814..141 1170 78.5 Minus
CG33253-RC 2410 CG33253-RC 1069..1745 814..141 1170 78.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 900..387 2540 99.6 Minus
X 23542271 X 19189882..19190088 223..17 1005 99 Minus
X 23542271 X 19189640..19189805 386..221 830 100 Minus
X 23542271 X 19185776..19186206 814..387 665 77.5 Minus
X 23542271 X 19186278..19186443 386..221 245 76.5 Minus
X 23542271 X 19186535..19186613 219..141 245 87.3 Minus
Blast to na_te.dros performed 2015-02-11 10:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 3310..3373 88..26 118 70.8 Minus

BS09890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:02 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-PA 162..1053 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:36 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7635-PA 162..1053 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:22:00 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 242..1136 10..908 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:44 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 242..1136 10..908 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:44 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19189885..19190091 10..220 97   Minus
X 19189034..19189547 387..900 99 -> Minus
X 19189640..19189805 221..386 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:22:00 Download gff for BS09890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19083067..19083580 387..900 99 -> Minus
arm_X 19083673..19083838 221..386 100 -> Minus
arm_X 19083918..19084124 10..220 97   Minus

BS09890.5prime Sequence

956 bp (899 high quality bases) assembled on 2006-04-19

> BS09890.5prime
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATT

BS09890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7635-PA 1053 Mec2-RA 1..939 17..955 4570 99.4 Plus
CG33253-PA 1104 CG33253-RA 844..944 845..945 180 87.1 Plus
CG33253-PA 1104 CG33253-RA 650..704 651..705 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 81..1019 17..955 4620 99.5 Plus
CG33253-RB 1733 CG33253-RB 392..1068 272..945 1170 78.5 Plus
CG33253-RC 2410 CG33253-RC 1069..1745 272..945 1170 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 186..699 2540 99.6 Plus
X 23542271 X 19189640..19189805 700..865 830 100 Plus
X 23542271 X 19188115..19188283 17..185 815 98.8 Plus
X 23542271 X 19185776..19186206 272..699 665 77.5 Plus
X 23542271 X 19189882..19189974 863..955 450 98.9 Plus
X 23542271 X 19186278..19186443 700..865 245 76.5 Plus
X 23542271 X 19186535..19186613 867..945 245 87.3 Plus
Blast to na_te.dros performed on 2015-02-10 03:50:45 has no hits.

BS09890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:02 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-PA 1..939 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:37 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7635-PA 1..939 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:54 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1019 9..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:19:44 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1019 9..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:19:44 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19188110..19188283 9..185 97 -> Plus
X 19189034..19189547 186..699 99 -> Plus
X 19189640..19189805 700..865 100 -> Plus
X 19189885..19189974 866..956 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:54 Download gff for BS09890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19082143..19082316 9..185 97 -> Plus
arm_X 19083067..19083580 186..699 99 -> Plus
arm_X 19083673..19083838 700..865 100 -> Plus
arm_X 19083918..19084007 866..956 97   Plus

BS09890.complete Sequence

1085 bp (1085 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636500

> BS09890.complete
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATTTGGCCAAATATGCCCACTTGATGGGCCCGCCACCGGAACTTAAG
CAATCGCCAGAAAAGTCAGATAACATAGTTTTAGACGCACTGGACGCTTG
GCCGAAAACCAACCTATGAAAGCTTTCTAGACCAT

BS09890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1053 CG7635-PA 1..1053 17..1069 5175 99.4 Plus
CG33253-RB 1245 CG33253-PB 268..944 272..945 1145 78.3 Plus
CG33253-RC 909 CG33253-PC 73..749 272..945 1145 78.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 81..1133 17..1069 5175 99.4 Plus
CG33253-RB 1733 CG33253-RB 392..1068 272..945 1145 78.3 Plus
CG33253-RC 2410 CG33253-RC 1069..1745 272..945 1145 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 186..699 2540 99.6 Plus
X 23542271 X 19189882..19190088 863..1069 1005 99 Plus
X 23542271 X 19189640..19189805 700..865 830 100 Plus
X 23542271 X 19188115..19188283 17..185 815 98.8 Plus
X 23542271 X 19185776..19186206 272..699 665 77.5 Plus
X 23542271 X 19186278..19186443 700..865 245 76.5 Plus
X 23542271 X 19186535..19186613 867..945 245 87.3 Plus
Blast to na_te.dros performed 2014-11-27 14:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 3310..3373 998..1060 118 70.8 Plus

BS09890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:47 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 17..1069 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:27 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1136 9..1076 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:44 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 81..1132 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:47 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1136 9..1076 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:42 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 81..1132 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:42 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
X 19189885..19190087 866..1068 99   Plus
X 19189640..19189805 700..865 100 -> Plus
X 19188115..19188283 17..185 98 -> Plus
X 19189034..19189547 186..699 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:44 Download gff for BS09890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19082148..19082316 17..185 98 -> Plus
arm_X 19083067..19083580 186..699 99 -> Plus
arm_X 19083673..19083838 700..865 100 -> Plus
arm_X 19083918..19084120 866..1068 99   Plus

BS09890.pep Sequence

Translation from 16 to 1068

> BS09890.pep
MEPHQDSPVYANYEDMRNSGPASSTAYMVNMGAAGMAPEPALRVPGTTQQ
YRGFKTSENEPKGCMEWVVTLFSVLIFIITSPIAIFICFKVVAEYERAII
FRLGRLSGGARGPGMFFILPCIDEYRKVDLRTVTFNVPQQEMLTKDSVTV
TVDAVVYYRISDPLYAVIQVEDYSMSTRLLAATTLRNIVGTRNLSELLTE
RETLAHNMQATLDEATEPWGVMVERVEIKDVSLPVSMQRAMAAEAEAARD
ARAKVIAAEGEKKSATALKEASDVISASPSALQLRYLQTLSSISAEKNST
IIFPLPMELLTPYLAKYAHLMGPPPELKQSPEKSDNIVLDALDAWPKTNL
*

BS09890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-PA 350 CG7635-PA 1..350 1..350 1769 100 Plus
CG33253-PA 367 CG33253-PA 49..324 45..319 1064 76.1 Plus
CG33253-PB 414 CG33253-PB 49..324 45..319 1064 76.1 Plus
CG33253-PC 302 CG33253-PC 2..259 63..319 1023 78.3 Plus
CG42540-PH 393 CG42540-PH 16..343 13..333 857 55.5 Plus