Clone BS09895 Report

Search the DGRC for BS09895

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG5646-RA
Protein status:BS09895.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09895.3prime Sequence

919 bp (829 high quality bases) assembled on 2006-04-19

> BS09895.3prime
ATGGTCTAGAAAGCTTTCATACGTAGGTGCCGTTCCACCGCTGACACCAC
TCCAGCGCATACTCGTAGCCCAGGAAAGTGGCGGCATTGAAGGGAACCGC
CCGCGCCACCAGCATCCAGCTGCCGCGGAAGATGCTCCTCCAGCCGTAGG
CTCTGTACTGCACCCGCACGCAATGGAAGATGCCCCGGTACTTGTGATTC
TCGTCCGCCTGCATCAGCGTCTTGACCACGTCGAACGGAATGACACACAC
CCACGAGATGACTCCCGCCCAGGCGCCGGCCAGCGTGGTCACCAGCAGGT
TCACACTGGATCCGTCCGACTGACTGCGTCGCCGGCGCACAAAGTCCCGC
CTGTCCATGTAGTCAACGCCCTGGCGATAGGCCAGCATATAGATTCCATA
GGGCAGGACGTCGCGGCACATCATGGGCAAAAGGCCGCGATAGAGCCCCG
AGATGCCATCAGTCTTGAGTATCCTTTTGAACGTGCCAAAGGCGGTCCTT
CTCTGGCCATAGAGATAGTCACTGTAATAAGTGGCTGTCTGCAGGCGAAC
CTTGATCAGCTCCATGGGACAGGCGATGAAGGACTGCACGAATCCCGCCA
CAGAGCCCGCCAGGAACATGTTGTGGTACTCCAGCTGCTCCCGCTGGTAG
TCACTGTGGCACACCTTTCTCAGCTGCCTCAGATGGTTTCCATAGATGCC
GAANAGCAGCGAGTTGATCGCTCCCGTCGAGATGAACGGGAAGAACATGC
CCCTGTAGAAGCCGTTGACCCCATTATTTCTGCTGTAGATCTGTTGAATG
GCTGTCACAACGGATGAATTTGAGGCCTGTTGNCAAACTTTGATCGTGTC
GAGTGGGTGGGCCACTAGCACCCCGCAGGCACCGCCAAAGCATCCGGCCA
CAAAGTCGCAGTAGTTCTC

BS09895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 912 CG5646-RA 10..912 919..17 4352 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 109..1011 919..17 4418 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559641..27560038 17..414 1975 99.7 Plus
3R 32079331 3R 27560274..27560515 529..770 1184 99.2 Plus
3R 32079331 3R 27560100..27560214 414..528 560 99.1 Plus
3R 32079331 3R 27560761..27560876 768..883 554 98.3 Plus
3R 32079331 3R 27561172..27561211 880..919 185 97.5 Plus
Blast to na_te.dros performed on 2015-02-10 21:23:48 has no hits.

BS09895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:10 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 10..912 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:49 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 10..912 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:51 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 109..1011 17..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:42 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 109..1011 17..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:42 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27559641..27560037 17..413 99 <- Plus
3R 27560100..27560214 414..528 99 <- Plus
3R 27560274..27560514 529..769 99 <- Plus
3R 27560763..27560875 770..882 98 <- Plus
3R 27561175..27561211 883..919 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:51 Download gff for BS09895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23385363..23385759 17..413 99 <- Plus
arm_3R 23385822..23385936 414..528 99 <- Plus
arm_3R 23385996..23386236 529..769 99 <- Plus
arm_3R 23386485..23386597 770..882 98 <- Plus
arm_3R 23386897..23386933 883..919 97   Plus

BS09895.5prime Sequence

815 bp (690 high quality bases) assembled on 2006-04-19

> BS09895.5prime
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCT

BS09895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 912 CG5646-RA 1..799 17..815 3870 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 99..898 16..815 3925 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559754..27560038 815..531 1410 99.6 Minus
3R 32079331 3R 27560274..27560515 416..175 1195 99.6 Minus
3R 32079331 3R 27560761..27560876 177..62 565 99.1 Minus
3R 32079331 3R 27560100..27560214 531..417 560 99.1 Minus
3R 32079331 3R 27561172..27561221 65..16 235 98 Minus
Blast to na_te.dros performed on 2015-02-11 11:56:49 has no hits.

BS09895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:11 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:50 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:42 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 95..898 9..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:30 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 95..898 9..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:30 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27560100..27560214 417..531 99 <- Minus
3R 27560274..27560514 176..416 99 <- Minus
3R 27560763..27560875 63..175 99 <- Minus
3R 27561175..27561225 9..62 92   Minus
3R 27559754..27560037 532..815 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:42 Download gff for BS09895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23385476..23385759 532..815 99 <- Minus
arm_3R 23385822..23385936 417..531 99 <- Minus
arm_3R 23385996..23386236 176..416 99 <- Minus
arm_3R 23386485..23386597 63..175 99 <- Minus
arm_3R 23386897..23386947 9..62 92   Minus

BS09895.complete Sequence

944 bp (944 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636501

> BS09895.complete
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
CCCTTCAATGCCGCCACTTTCCTGGGCTACGAGTATGCGCTGGAGTGGTG
TCAGCGGTGGAACGGCACCTACGTATGAAAGCTTTCTAGACCAT

BS09895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 912 CG5646-PA 1..912 17..928 4485 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 99..1011 16..928 4490 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559641..27560038 928..531 1975 99.7 Minus
3R 32079331 3R 27560274..27560515 416..175 1195 99.6 Minus
3R 32079331 3R 27560761..27560876 177..62 565 99.1 Minus
3R 32079331 3R 27560100..27560214 531..417 560 99.1 Minus
3R 32079331 3R 27561172..27561221 65..16 235 98 Minus
Blast to na_te.dros performed on 2014-11-27 14:47:06 has no hits.

BS09895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:07 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:59 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 76..992 9..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:43 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 100..1010 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:07 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 76..992 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:33 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 100..1010 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27559642..27560037 532..927 99 <- Minus
3R 27560100..27560214 417..531 99 <- Minus
3R 27560274..27560514 176..416 99 <- Minus
3R 27560763..27560875 63..175 99 <- Minus
3R 27561175..27561220 17..62 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:43 Download gff for BS09895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23385364..23385759 532..927 99 <- Minus
arm_3R 23385822..23385936 417..531 99 <- Minus
arm_3R 23385996..23386236 176..416 99 <- Minus
arm_3R 23386485..23386597 63..175 99 <- Minus
arm_3R 23386897..23386942 17..62 97   Minus

BS09895.pep Sequence

Translation from 16 to 927

> BS09895.pep
MKWENYCDFVAGCFGGACGVLVAHPLDTIKVWQQASNSSVVTAIQQIYSR
NNGVNGFYRGMFFPFISTGAINSLLFGIYGNHLRQLRKVCHSDYQREQLE
YHNMFLAGSVAGFVQSFIACPMELIKVRLQTATYYSDYLYGQRRTAFGTF
KRILKTDGISGLYRGLLPMMCRDVLPYGIYMLAYRQGVDYMDRRDFVRRR
RSQSDGSSVNLLVTTLAGAWAGVISWVCVIPFDVVKTLMQADENHKYRGI
FHCVRVQYRAYGWRSIFRGSWMLVARAVPFNAATFLGYEYALEWCQRWNG
TYV*

BS09895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 303 CG5646-PA 1..303 1..303 1637 100 Plus
CG4995-PD 360 CG4995-PD 4..278 8..300 386 34.7 Plus
CG4995-PC 360 CG4995-PC 4..278 8..300 386 34.7 Plus
CG4995-PB 399 CG4995-PB 43..317 8..300 386 34.7 Plus
CG4995-PA 399 CG4995-PA 43..317 8..300 386 34.7 Plus