Clone Sequence Records
BS09895.3prime Sequence
919 bp (829 high quality bases) assembled on 2006-04-19
> BS09895.3prime
ATGGTCTAGAAAGCTTTCATACGTAGGTGCCGTTCCACCGCTGACACCAC
TCCAGCGCATACTCGTAGCCCAGGAAAGTGGCGGCATTGAAGGGAACCGC
CCGCGCCACCAGCATCCAGCTGCCGCGGAAGATGCTCCTCCAGCCGTAGG
CTCTGTACTGCACCCGCACGCAATGGAAGATGCCCCGGTACTTGTGATTC
TCGTCCGCCTGCATCAGCGTCTTGACCACGTCGAACGGAATGACACACAC
CCACGAGATGACTCCCGCCCAGGCGCCGGCCAGCGTGGTCACCAGCAGGT
TCACACTGGATCCGTCCGACTGACTGCGTCGCCGGCGCACAAAGTCCCGC
CTGTCCATGTAGTCAACGCCCTGGCGATAGGCCAGCATATAGATTCCATA
GGGCAGGACGTCGCGGCACATCATGGGCAAAAGGCCGCGATAGAGCCCCG
AGATGCCATCAGTCTTGAGTATCCTTTTGAACGTGCCAAAGGCGGTCCTT
CTCTGGCCATAGAGATAGTCACTGTAATAAGTGGCTGTCTGCAGGCGAAC
CTTGATCAGCTCCATGGGACAGGCGATGAAGGACTGCACGAATCCCGCCA
CAGAGCCCGCCAGGAACATGTTGTGGTACTCCAGCTGCTCCCGCTGGTAG
TCACTGTGGCACACCTTTCTCAGCTGCCTCAGATGGTTTCCATAGATGCC
GAANAGCAGCGAGTTGATCGCTCCCGTCGAGATGAACGGGAAGAACATGC
CCCTGTAGAAGCCGTTGACCCCATTATTTCTGCTGTAGATCTGTTGAATG
GCTGTCACAACGGATGAATTTGAGGCCTGTTGNCAAACTTTGATCGTGTC
GAGTGGGTGGGCCACTAGCACCCCGCAGGCACCGCCAAAGCATCCGGCCA
CAAAGTCGCAGTAGTTCTC
BS09895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 912 | CG5646-RA | 10..912 | 919..17 | 4352 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 109..1011 | 919..17 | 4418 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559641..27560038 | 17..414 | 1975 | 99.7 | Plus |
3R | 32079331 | 3R | 27560274..27560515 | 529..770 | 1184 | 99.2 | Plus |
3R | 32079331 | 3R | 27560100..27560214 | 414..528 | 560 | 99.1 | Plus |
3R | 32079331 | 3R | 27560761..27560876 | 768..883 | 554 | 98.3 | Plus |
3R | 32079331 | 3R | 27561172..27561211 | 880..919 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:23:48 has no hits.
BS09895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:10 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 10..912 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:49 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 10..912 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:51 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 109..1011 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:42 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 109..1011 | 17..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:42 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27559641..27560037 | 17..413 | 99 | <- | Plus |
3R | 27560100..27560214 | 414..528 | 99 | <- | Plus |
3R | 27560274..27560514 | 529..769 | 99 | <- | Plus |
3R | 27560763..27560875 | 770..882 | 98 | <- | Plus |
3R | 27561175..27561211 | 883..919 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:51 Download gff for
BS09895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23385363..23385759 | 17..413 | 99 | <- | Plus |
arm_3R | 23385822..23385936 | 414..528 | 99 | <- | Plus |
arm_3R | 23385996..23386236 | 529..769 | 99 | <- | Plus |
arm_3R | 23386485..23386597 | 770..882 | 98 | <- | Plus |
arm_3R | 23386897..23386933 | 883..919 | 97 | | Plus |
BS09895.5prime Sequence
815 bp (690 high quality bases) assembled on 2006-04-19
> BS09895.5prime
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCT
BS09895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 912 | CG5646-RA | 1..799 | 17..815 | 3870 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 99..898 | 16..815 | 3925 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559754..27560038 | 815..531 | 1410 | 99.6 | Minus |
3R | 32079331 | 3R | 27560274..27560515 | 416..175 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 27560761..27560876 | 177..62 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 27560100..27560214 | 531..417 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 27561172..27561221 | 65..16 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:56:49 has no hits.
BS09895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:11 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:50 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:42 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 95..898 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:30 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 95..898 | 9..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:30 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27560100..27560214 | 417..531 | 99 | <- | Minus |
3R | 27560274..27560514 | 176..416 | 99 | <- | Minus |
3R | 27560763..27560875 | 63..175 | 99 | <- | Minus |
3R | 27561175..27561225 | 9..62 | 92 | | Minus |
3R | 27559754..27560037 | 532..815 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:42 Download gff for
BS09895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23385476..23385759 | 532..815 | 99 | <- | Minus |
arm_3R | 23385822..23385936 | 417..531 | 99 | <- | Minus |
arm_3R | 23385996..23386236 | 176..416 | 99 | <- | Minus |
arm_3R | 23386485..23386597 | 63..175 | 99 | <- | Minus |
arm_3R | 23386897..23386947 | 9..62 | 92 | | Minus |
BS09895.complete Sequence
944 bp (944 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636501
> BS09895.complete
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
CCCTTCAATGCCGCCACTTTCCTGGGCTACGAGTATGCGCTGGAGTGGTG
TCAGCGGTGGAACGGCACCTACGTATGAAAGCTTTCTAGACCAT
BS09895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 912 | CG5646-PA | 1..912 | 17..928 | 4485 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 99..1011 | 16..928 | 4490 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559641..27560038 | 928..531 | 1975 | 99.7 | Minus |
3R | 32079331 | 3R | 27560274..27560515 | 416..175 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 27560761..27560876 | 177..62 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 27560100..27560214 | 531..417 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 27561172..27561221 | 65..16 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:06 has no hits.
BS09895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:07 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:59 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 76..992 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:43 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 100..1010 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:07 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 76..992 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:33 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 100..1010 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27559642..27560037 | 532..927 | 99 | <- | Minus |
3R | 27560100..27560214 | 417..531 | 99 | <- | Minus |
3R | 27560274..27560514 | 176..416 | 99 | <- | Minus |
3R | 27560763..27560875 | 63..175 | 99 | <- | Minus |
3R | 27561175..27561220 | 17..62 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:43 Download gff for
BS09895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23385364..23385759 | 532..927 | 99 | <- | Minus |
arm_3R | 23385822..23385936 | 417..531 | 99 | <- | Minus |
arm_3R | 23385996..23386236 | 176..416 | 99 | <- | Minus |
arm_3R | 23386485..23386597 | 63..175 | 99 | <- | Minus |
arm_3R | 23386897..23386942 | 17..62 | 97 | | Minus |
BS09895.pep Sequence
Translation from 16 to 927
> BS09895.pep
MKWENYCDFVAGCFGGACGVLVAHPLDTIKVWQQASNSSVVTAIQQIYSR
NNGVNGFYRGMFFPFISTGAINSLLFGIYGNHLRQLRKVCHSDYQREQLE
YHNMFLAGSVAGFVQSFIACPMELIKVRLQTATYYSDYLYGQRRTAFGTF
KRILKTDGISGLYRGLLPMMCRDVLPYGIYMLAYRQGVDYMDRRDFVRRR
RSQSDGSSVNLLVTTLAGAWAGVISWVCVIPFDVVKTLMQADENHKYRGI
FHCVRVQYRAYGWRSIFRGSWMLVARAVPFNAATFLGYEYALEWCQRWNG
TYV*
BS09895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 303 | CG5646-PA | 1..303 | 1..303 | 1637 | 100 | Plus |
CG4995-PD | 360 | CG4995-PD | 4..278 | 8..300 | 386 | 34.7 | Plus |
CG4995-PC | 360 | CG4995-PC | 4..278 | 8..300 | 386 | 34.7 | Plus |
CG4995-PB | 399 | CG4995-PB | 43..317 | 8..300 | 386 | 34.7 | Plus |
CG4995-PA | 399 | CG4995-PA | 43..317 | 8..300 | 386 | 34.7 | Plus |