Clone Sequence Records
BS09901.3prime Sequence
902 bp (806 high quality bases) assembled on 2006-04-19
> BS09901.3prime
ATGGTCTAGAAAGCTTTTACTCCTGGTGCTTTGACTTTTTCTTTTTCTTT
GCTGGTGTTGGCTGATCCTCGGGCTCTGGTGCTGCCGCCTCCTCAACGGC
CTCCACCTCTTCGTCCTTCTGCTTCTTCTTCTTTTTCTTCTTCTTCTCGG
ACTTGACCTCCGCCTCCTCCTCAGCAGGTTCCTCCTTCTTAACAGGCGTC
TGCTGTTCGGACTCGGAGTGCTTGCGCTTCTTCTTCACGTTCAAGGTGTT
GTCGGCCTCTGGTTGGTAGGTGAACACCTCGCTCTTGGCCTGGTACTTCT
CGAACTTGGCCTTGGCCTTGCCGGTGCCGGAGAGTTTGCGCAGGTTGCCC
TCCTCCAGGAGTCGCAGCCGAGACTCCAGTTTAACCTTGTGAGCCGCTCC
TAGCTCAAAGGTAGCCTCTTCGCCAAAGGCATCAACACGCGTGGCAAGCG
ACGCTTTGGCGGCCAGTGAACGCGACATTTTGCCCTTGTTCTTCTGGCTT
GCCTGTCCCACCAACTGGGCGTGATAGATCAAACCGTACTTTGGAGTATC
CTTCTTGGTCTTCAGCGCACGGAAGAGTGCTTTCTCGGCGCCCAGAATTT
GTACAGTAGATGAGGGATGCTTGGCCAGGTTAATCAGCGAGCCAGCATGG
GCAATCAGTCGAGCGCCGACGGTGTCGCCCACGAGCACTGTCAAATTCGG
AGCCATGGCCATCATTCTGGCCTTCAAGTAGTCGTACAAGTGGGTGCGGT
AATCGTTGATCGATATGATCTCGTCGCACAGACACTGAATGTTCAGCACA
TCCTCCTCGGAGATTTCGGTACCCATAGAGATCTCAGCTGCCTCCTTGAC
CTTTTTCTCCACATCTTCTGGCAGAATGTCGGACAGATCGCTTGTGGCCA
TA
BS09901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10206-PA | 1536 | nop5-RA | 651..1536 | 902..17 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 783..1668 | 902..17 | 4415 | 99.9 | Minus |
| Nop56-RA | 1746 | CG13849-RA | 1025..1212 | 670..483 | 220 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917341..6917961 | 282..902 | 3090 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6916898..6917164 | 17..283 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 22419629..22419816 | 483..670 | 220 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:00:33 has no hits.
BS09901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:14 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-PA | 652..1536 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:54 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10206-PA | 652..1536 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:23:13 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 784..1672 | 9..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:48 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 784..1672 | 9..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:48 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6916894..6917162 | 9..281 | 98 | <- | Plus |
| 2L | 6917341..6917960 | 282..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:23:13 Download gff for
BS09901.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6916894..6917162 | 9..281 | 98 | <- | Plus |
| arm_2L | 6917341..6917960 | 282..901 | 99 | | Plus |
BS09901.5prime Sequence
847 bp (825 high quality bases) assembled on 2006-04-19
> BS09901.5prime
GAAGTTATCAGTCGACATGTTTGTGCTCTACGAAACGCCGGCGGGCTACG
CGATTTTCAAGCTGCTGGACGAAAAGAAACTGGAGCAGGTGGACAATCTG
TACCAGGAGTTTGAGACTCCGGAGAAGGCCAACAAGCTGCTGAAGCTGAA
GCACTTTGAGAAATTCAATGACACCACAGAGGCGCTGGCCGCTGCAACGG
CGGCGGTGGAGGGCAAGGTAGCCAAGCCGCTGAAAAAGACACTCAAGAAG
CTGCTCGTTGACGACGTGCAGTCTTCGCTCTTGGTTGCCGATGCCAAACT
GGGCACAGCCATCAAGGACAAACTGTCGGTACAGTGTGTCTGCAACACTG
GCGTCCAGGAGCTGATGCGCTGTATTCGCCAGCAGGCGGACAGTCTGCTT
GGTGGTCTGCCCAAGCGTGAGATGACCGCCATGGCCCTGGGTCTTGCCCA
CTCCTTGTCGCGCTACAAGCTTAAGTTCTCGCCCGACAAGATCGACACAA
TGATTGTGCAGGCCCAGTGCTTGCTGGATGACCTGGACAAGGAGTTGAAC
AACTACATGATGCGTGCACGCGAGTGGTACGGTTGGCACTTTCCCGAGCT
GGGCAAGATTATTACCGACAACATTGCCTTCGTGAAGACCATCAAGTTGG
TGGGCACCAGGGATAATATGGCCACAAGCGATCTGTCCGACATTCTGCCA
GAAGATGTGGAGGAAAAGGTCAAGGAGGCAGCTGAGATCTCTATGGGTAC
CGAAATCTCCGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGA
TCATATCGATCAACGATTACCGCACCCACTTGTACGACTACTTGAAG
BS09901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10206-PA | 1536 | nop5-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 133..963 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917781..6918611 | 847..17 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:30:25 has no hits.
BS09901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:15 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:37:55 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10206-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:50 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 129..963 | 13..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:04 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 129..963 | 13..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:04 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6917781..6918614 | 11..847 | 99 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:50 Download gff for
BS09901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6917781..6918614 | 11..847 | 99 | -- | Minus |
BS09901.complete Sequence
1568 bp (1568 high quality bases) assembled on 2006-03-25
> BS09901.complete
GAAGTTATCAGTCGACATGTTTGTGCTCTACGAAACGCCGGCGGGCTACG
CGATTTTCAAGCTGCTGGACGAAAAGAAACTGGAGCAGGTGGACAATCTG
TACCAGGAGTTTGAGACTCCGGAGAAGGCCAACAAGCTGCTGAAGCTGAA
GCACTTTGAGAAATTCAATGACACCACAGAGGCGCTGGCCGCTGCAACGG
CGGCGGTGGAGGGCAAGGTAGCCAAGCCGCTGAAAAAGACACTCAAGAAG
CTGCTCGTTGACGACGTGCAGTCTTCGCTCTTGGTTGCCGATGCCAAACT
GGGCACAGCCATCAAGGACAAACTGTCGGTACAGTGTGTCTGCAACACTG
GCGTCCAGGAGCTGATGCGCTGTATTCGCCAGCAGGCGGACAGTCTGCTT
GGTGGTCTGCCCAAGCGTGAGATGACCGCCATGGCCCTGGGTCTTGCCCA
CTCCTTGTCGCGCTACAAGCTTAAGTTCTCGCCCGACAAGATCGACACAA
TGATTGTGCAGGCCCAGTGCTTGCTGGATGACCTGGACAAGGAGTTGAAC
AACTACATGATGCGTGCACGCGAGTGGTACGGTTGGCACTTTCCCGAGCT
GGGCAAGATTATTACCGACAACATTGCCTTCGTGAAGACCATCAAGTTGG
TGGGCACCAGGGATAATATGGCCACAAGCGATCTGTCCGACATTCTGCCA
GAAGATGTGGAGGAAAAGGTCAAGGAGGCAGCTGAGATCTCTATGGGTAC
CGAAATCTCCGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGA
TCATATCGATCAACGATTACCGCACCCACTTGTACGACTACTTGAAGGCC
AGAATGATGGCCATGGCTCCGAATTTGACAGTGCTCGTGGGCGACACCGT
CGGCGCTCGACTGATTGCCCATGCTGGCTCGCTGATTAACCTGGCCAAGC
ATCCCTCATCTACTGTACAAATTCTGGGCGCCGAGAAAGCACTCTTCCGT
GCGCTGAAGACCAAGAAGGATACTCCAAAGTACGGTTTGATCTATCACGC
CCAGTTGGTGGGACAGGCAAGCCAGAAGAACAAGGGCAAAATGTCGCGTT
CACTGGCCGCCAAAGCGTCGCTTGCCACGCGTGTTGATGCCTTTGGCGAA
GAGGCTACCTTTGAGCTAGGAGCGGCTCACAAGGTTAAACTGGAGTCTCG
GCTGCGACTCCTGGAGGAGGGCAACCTGCGCAAACTCTCCGGCACCGGCA
AGGCCAAGGCCAAGTTCGAGAAGTACCAGGCCAAGAGCGAGGTGTTCACC
TACCAACCAGAGGCCGACAACACCTTGAACGTGAAGAAGAAGCGCAAGCA
CTCCGAGTCCGAACAGCAGACGCCTGTTAAGAAGGAGGAACCTGCTGAGG
AGGAGGCGGAGGTCAAGTCCGAGAAGAAGAAGAAAAAGAAGAAGAAGCAG
AAGGACGAAGAGGTGGAGGCCGTTGAGGAGGCGGCAGCACCAGAGCCCGA
GGATCAGCCAACACCAGCAAAGAAAAAGAAAAAGTCAAAGCACCAGGAGT
AAAAGCTTTCTAGACCAT
BS09901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1536 | CG10206-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| Nop56-RA | 1491 | CG13849-PA | 913..1100 | 899..1086 | 220 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 133..1668 | 17..1552 | 7680 | 100 | Plus |
| Nop56-RA | 1746 | CG13849-RA | 1025..1212 | 899..1086 | 220 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917341..6918611 | 1287..17 | 6355 | 100 | Minus |
| 2L | 23513712 | 2L | 6916898..6917164 | 1552..1286 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 22419629..22419816 | 1086..899 | 220 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:19 has no hits.
BS09901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:08 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 1..1536 | 17..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:01 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 127..1670 | 13..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:47 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 139..1666 | 23..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:09 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 127..1670 | 13..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:35 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 139..1666 | 23..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:35 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6916900..6917162 | 1288..1550 | 100 | <- | Minus |
| 2L | 6917341..6918605 | 23..1287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:47 Download gff for
BS09901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6916900..6917162 | 1288..1550 | 100 | <- | Minus |
| arm_2L | 6917341..6918605 | 23..1287 | 100 | | Minus |
BS09901.pep Sequence
Translation from 16 to 1551
> BS09901.pep
MFVLYETPAGYAIFKLLDEKKLEQVDNLYQEFETPEKANKLLKLKHFEKF
NDTTEALAAATAAVEGKVAKPLKKTLKKLLVDDVQSSLLVADAKLGTAIK
DKLSVQCVCNTGVQELMRCIRQQADSLLGGLPKREMTAMALGLAHSLSRY
KLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIIT
DNIAFVKTIKLVGTRDNMATSDLSDILPEDVEEKVKEAAEISMGTEISEE
DVLNIQCLCDEIISINDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLI
AHAGSLINLAKHPSSTVQILGAEKALFRALKTKKDTPKYGLIYHAQLVGQ
ASQKNKGKMSRSLAAKASLATRVDAFGEEATFELGAAHKVKLESRLRLLE
EGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKKRKHSESEQ
QTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEEVEAVEEAAAPEPEDQPTP
AKKKKKSKHQE*
BS09901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-PA | 511 | CG10206-PA | 1..511 | 1..511 | 2575 | 100 | Plus |
| Nop56-PA | 496 | CG13849-PA | 4..495 | 1..487 | 850 | 40.2 | Plus |
| Prp31-PA | 501 | CG6876-PA | 100..341 | 162..401 | 323 | 31 | Plus |
