Clone Sequence Records
BS09906.5prime Sequence
932 bp (863 high quality bases) assembled on 2006-04-19
> BS09906.5prime
GAAGTTATCAGTCGACATGGTGAGAAGCACATTCCTGGCCACCTACAACC
AGACACCGGTAGCCGGCGTTGGACGGCTGGCCATCACCAAGAAGCTGGTG
CTCTGGTTGGTGCTGGTGCTGCAGGTGGGCTTCATCGGCTGCATATGGCT
GCTGCAGATGAGCCGTGGCCAGGAGTCGCAGCAGCGCAGTGCAATGGACC
AACTTGGCGGACGGGTCAACTTCGTGGCCAGCGGTGAAGCCCCTATGGAG
AAGATGGCACTTGTGGGCGGAACCCACTGTCCGCATCTGCAGGAGAATGT
CAACCGCTACGACAAGGACTTTTATCAAATGAAACCGGAACGACTGAACG
AATCCCACCTGCCCGACTACAATGTGCCCGCCTATGTGGACGCGGAGATG
GGTCTAACCCCAAACCTCTGGTGCTATCGCGAGGGGACCATCAACGAGAG
CCAGCGGCTCAACGATGTGGACTATCTGATGGCGCCGCCTCAATGCAGAT
GTGAAAGTGGCTGGCACGGCAGAGATTGCGGCCAGCCGGAGATCATATGG
CGAGCCCTGATGACGTCCAATCGGGCCAGTAAACGAGGCGGTAGCACACC
GCTTCAACTGGTCGAGGCCAGTTCTTCTTCACTGCACCGCCTGTTCTATA
TGCTTGAATTGGGCGCCTGGGACCACCTAAGTCTGGAGCTCTTGGAGCTG
CAAATTCGAGCGCTCATCGAGGTTGTGGACTACTTTCTCATATACTATGT
GAGCAACGGCAGCAAGGAGCGGAGTCTGGAGAGCATGCTGGGCAGCCAAA
CGAGCTATACGCTACTACGCTGCTCCTCCGAGAGCAACTGCACCAGCTCA
ATGGCCTACAGTCACTTTAGGCGGCAGCTGTGGCAGCAGTGTGGTGTCCA
AATGCAGGCACAGGACCTGCTGCTGCACGGGG
BS09906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 1464 | CG31849-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 144..1060 | 16..932 | 4585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13181537..13182453 | 932..16 | 4585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:08:41 has no hits.
BS09906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:23 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:07 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:11 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 129..1060 | 2..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:31 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 129..1060 | 2..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:31 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13181537..13182468 | 2..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:11 Download gff for
BS09906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13181537..13182468 | 2..932 | 99 | | Minus |
BS09906.3prime Sequence
872 bp (817 high quality bases) assembled on 2006-04-19
> BS09906.3prime
ATGGTCTAGAAAGCTTTTAGTCTTCGTCCTGCAGATCTTCCAGGACGTCC
ACATCGTATAGGTTCACCAGCAGCTGGCCGTACTGGCTGCTGTGCTGGAG
CGCCTCCTCCGGAGCGAAATACTTCTCGCTCTGCTCCCGCAAGCGGTGCA
GCTGCGTGGTGCCATCGATGTGAACTCCATTGGCTATCAGTTGCTGCATG
TAGTTGGCATCGATGTGGGCATTGCGGGTATCGTTGGGTAGTTTTACTGG
CAGCTTGCGGGGACTGGAGCTCTGCAGCAGGAGCACAATCTGCTCGGGAG
GCAGGCACAGCTCGCAGTTCCAGCCGCCGTAGTGGTTGAGATCACCCAGT
GTGCTGCTCGCCAGCCGGTGCAGGCGGTGAGCATCCAGTTGGGCACTGTG
CAGGTGCCCCAAGGAACTTATCACCCCATTTAGGAGGGTCTTCTTCGGAT
GCTGCCAGTAGAATCCATATACATTGTACTTCAAACGAAATTTCAGCGGC
AGCACATCCTTGGCATAGTACTTCAGAAACTTGAGTGCTGCTGGCGCGTA
GACCGTTCCACTGTCCCCGTGCAGCAGCAGGTCCTGTGCCTGCATTTGGA
CACCACACTGCTGCCACAGCTGCCGCCTAAAGTGACTGTAGGCCATTGAG
CTGGTGCAGTTGCTCTCGGAGGAGCAGCGTAGTAGCGTATAGCTCGTTTG
GCTGCCCAGCATGCTCTCCAGACTCCGCTCCTTGCTGCCGTTGCTCACAT
AGTATATGAGAAAGTAGTCCACAACCTCGATGAGCGCTCGAATTTGCAGC
TCCAAGAGCTCCAGACTTANGTGGTCCCAGGCGCCCAATTCAAGCATATA
GAACAGGCGGTGCAGTGAAGAA
BS09906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 1464 | CG31849-RA | 609..1464 | 872..17 | 4261 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 753..1608 | 872..17 | 4269 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180989..13181844 | 17..872 | 4269 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 15:37:19 has no hits.
BS09906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:22 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 611..1464 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:05 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 611..1464 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:20:14 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 753..1610 | 12..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:47:57 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 753..1610 | 12..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:47:57 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13180987..13181844 | 12..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:20:14 Download gff for
BS09906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13180987..13181844 | 12..872 | 99 | | Plus |
BS09906.complete Sequence
1496 bp (1496 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636502
> BS09906.complete
GAAGTTATCAGTCGACATGGTGAGAAGCACATTCCTGGCCACCTACAACC
AGACACCGGTAGCCGGCGTTGGACGGCTGGCCATCACCAAGAAGCTGGTG
CTCTGGTTGGTGCTGGTGCTGCAGGTGGGCTTCATCGGCTGCATATGGCT
GCTGCAGATGAGCCGTGGCCAGGAGTCGCAGCAGCGCAGTGCAATGGACC
AACTTGGCGGACGGGTCAACTTCGTGGCCAGCGGTGAAGCCCCTATGGAG
AAGATGGCACTTGTGGGCGGAACCCACTGTCCGCATCTGCAGGAGAATGT
CAACCGCTACGACAAGGACTTTTATCAAATGAAACCGGAACGACTGAACG
AATCCCACCTGCCCGACTACAATGTGCCCGCCTATGTGGACGCGGAGATG
GGTCTAACCCCAAACCTCTGGTGCTATCGCGAGGGGACCATCAACGAGAG
CCAGCGGCTCAACGATGTGGACTATCTGATGGCGCCGCCTCAATGCAGAT
GTGAAAGTGGCTGGCACGGCAGAGATTGCGGCCAGCCGGAGATCATATGG
CGAGCCCTGATGACGTCCAATCGGGCCAGTAAACGAGGCGGTAGCACACC
GCTTCAACTGGTCGAGGCCAGTTCTTCTTCACTGCACCGCCTGTTCTATA
TGCTTGAATTGGGCGCCTGGGACCACCTAAGTCTGGAGCTCTTGGAGCTG
CAAATTCGAGCGCTCATCGAGGTTGTGGACTACTTTCTCATATACTATGT
GAGCAACGGCAGCAAGGAGCGGAGTCTGGAGAGCATGCTGGGCAGCCAAA
CGAGCTATACGCTACTACGCTGCTCCTCCGAGAGCAACTGCACCAGCTCA
ATGGCCTACAGTCACTTTAGGCGGCAGCTGTGGCAGCAGTGTGGTGTCCA
AATGCAGGCACAGGACCTGCTGCTGCACGGGGACAGTGGAACGGTCTACG
CGCCAGCAGCACTCAAGTTTCTGAAGTACTATGCCAAGGATGTGCTGCCG
CTGAAATTTCGTTTGAAGTACAATGTATATGGATTCTACTGGCAGCATCC
GAAGAAGACCCTCCTAAATGGGGTGATAAGTTCCTTGGGGCACCTGCACA
GTGCCCAACTGGATGCTCACCGCCTGCACCGGCTGGCGAGCAGCACACTG
GGTGATCTCAACCACTACGGCGGCTGGAACTGCGAGCTGTGCCTGCCTCC
CGAGCAGATTGTGCTCCTGCTGCAGAGCTCCAGTCCCCGCAAGCTGCCAG
TAAAACTACCCAACGATACCCGCAATGCCCACATCGATGCCAACTACATG
CAGCAACTGATAGCCAATGGAGTTCACATCGATGGCACCACGCAGCTGCA
CCGCTTGCGGGAGCAGAGCGAGAAGTATTTCGCTCCGGAGGAGGCGCTCC
AGCACAGCAGCCAGTACGGCCAGCTGCTGGTGAACCTATACGATGTGGAC
GTCCTGGAAGATCTGCAGGACGAAGACTAAAAGCTTTCTAGACCAT
BS09906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 1464 | CG31849-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 144..1608 | 16..1480 | 7325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180989..13182453 | 1480..16 | 7325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:09:59 has no hits.
BS09906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:10 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:03 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 126..1607 | 2..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:53 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 145..1606 | 17..1478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:10 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 126..1607 | 2..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:17 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 145..1606 | 17..1478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:17 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13180991..13182452 | 17..1478 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:53 Download gff for
BS09906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13180991..13182452 | 17..1478 | 100 | | Minus |
BS09906.pep Sequence
Translation from 16 to 1479
> BS09906.pep
MVRSTFLATYNQTPVAGVGRLAITKKLVLWLVLVLQVGFIGCIWLLQMSR
GQESQQRSAMDQLGGRVNFVASGEAPMEKMALVGGTHCPHLQENVNRYDK
DFYQMKPERLNESHLPDYNVPAYVDAEMGLTPNLWCYREGTINESQRLND
VDYLMAPPQCRCESGWHGRDCGQPEIIWRALMTSNRASKRGGSTPLQLVE
ASSSSLHRLFYMLELGAWDHLSLELLELQIRALIEVVDYFLIYYVSNGSK
ERSLESMLGSQTSYTLLRCSSESNCTSSMAYSHFRRQLWQQCGVQMQAQD
LLLHGDSGTVYAPAALKFLKYYAKDVLPLKFRLKYNVYGFYWQHPKKTLL
NGVISSLGHLHSAQLDAHRLHRLASSTLGDLNHYGGWNCELCLPPEQIVL
LLQSSSPRKLPVKLPNDTRNAHIDANYMQQLIANGVHIDGTTQLHRLREQ
SEKYFAPEEALQHSSQYGQLLVNLYDVDVLEDLQDED*
BS09906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 487 | CG31849-PA | 1..487 | 1..487 | 2580 | 100 | Plus |
