Clone Sequence Records
BS09908.3prime Sequence
941 bp (875 high quality bases) assembled on 2006-04-19
> BS09908.3prime
ATGGTCTAGAAAGCTTTTACGCAGTCAGTTTGGACAGTTCCTCGCGCAGC
TCGGCCGTGTCAATGGCTCCCTTCGCTTGCGATTGCGGCTGGGCTTGGGC
TTGGGCTTGGGATTGGGCCAGGAGGCGGGCACAGTTCTTCTTGTGCATGA
ACCAATGCAGCCGCTGGCATTCGCGATCGCAATACTGCACCGCCTTGCAC
TTGGAGCACTTCTTGTCCGGTTTCTCGGCGCCGCAGGTGCTGCAGTAGTT
GCCCTCGTCCGTAATCCACCTCATCCCATTGATGGCATTTCGCAGGACAG
TCAGTGCTGGTGGGGCATCCTTGGCGCCAAATTGCGTTGCGATTTGCCGG
AAGATGGTGCACTCTCTCACGGGAAACTCCCTGGCACATTCGCGCAACGT
GTATTCCACATAGTCCAGCTGGCCCAGCTTGTTCTCCTTGAGCACCCGCT
TCACAAACATCTCGATGAAATCGTTCTTGTTCGCATCGCCCGCCTCCTCG
CCACTTTTCTCCTTGTGCTGCGCCTTGAATTGCTCCTCGCAGCGTATTAG
TTCGGCCAAAATCCAGCCCTGATAATGGAACTTGAAGGCCAGCAGCTCGT
TGAGGTCATGCGACTTCTGCATCTCCTTTTCGCACATCAAAGCCAGCGTC
TTGCGCAGACTGGACAGGATCCTAAGCAATCCCAAGGACTGCACATTCAG
GGCAATCCTCACGGGATGCAGGTTGATTTCGGTGACAAAGGCGTGGAACG
ATTTGAGTAAGCTGGGTGGTATATGCGGCTCCGTCTGCTGGCCATGCACT
TGGGTGTAGTACTCCAAACTCGACTGGGTCACATAGTTGTTGATGGTCTC
CACGCAGGCGTGGTTGCCCACAAAGGCGGCCATTTGGGCGGCGGTCCTGT
TGACACTATTGATGCTACCCGGCTTGAATGCAGCATCCAAA
BS09908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-PA | 1224 | CG8003-RA | 314..1224 | 927..17 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-RB | 1555 | CG8003-RB | 400..1324 | 941..17 | 4580 | 99.8 | Minus |
CG8003-RA | 1368 | CG8003-RA | 400..1324 | 941..17 | 4580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10661942..10662624 | 941..259 | 3370 | 99.6 | Minus |
3L | 28110227 | 3L | 10662683..10662926 | 260..17 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:50:22 has no hits.
BS09908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:26 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-PA | 303..1224 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:11 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-PA | 303..1224 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:34:51 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 403..1328 | 12..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:47 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 403..1328 | 12..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:47 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10661945..10662623 | 260..938 | 99 | -> | Minus |
3L | 10662684..10662930 | 12..259 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:34:51 Download gff for
BS09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10655045..10655723 | 260..938 | 99 | -> | Minus |
arm_3L | 10655784..10656030 | 12..259 | 98 | | Minus |
BS09908.5prime Sequence
922 bp (815 high quality bases) assembled on 2006-04-19
> BS09908.5prime
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAATCGCAACG
BS09908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-PA | 1224 | CG8003-RA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-RB | 1555 | CG8003-RB | 101..1006 | 17..922 | 4530 | 100 | Plus |
CG8003-RA | 1368 | CG8003-RA | 101..1006 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10661849..10662548 | 223..922 | 3500 | 100 | Plus |
3L | 28110227 | 3L | 10661575..10661782 | 17..224 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:53 has no hits.
BS09908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:27 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:13 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:06 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 90..1006 | 7..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:01 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 90..1006 | 7..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:01 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10661564..10661781 | 7..223 | 98 | -> | Plus |
3L | 10661850..10662548 | 224..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:06 Download gff for
BS09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10654664..10654881 | 7..223 | 98 | -> | Plus |
arm_3L | 10654950..10655648 | 224..922 | 100 | | Plus |
BS09908.complete Sequence
1256 bp (1256 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636503
> BS09908.complete
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAATCGCAACGCAATTTGGCGCCAAGGATGCCCCACCAG
CACTGACTGTCCTGCGAAATGCCATCAATGGGATGAGGTGGATTACGGAC
GAGGGCAACTACTGCAGCACCTGCGGCGCCGAGAAACCGGACAAGAAGTG
CTCCAAGTGCAAGGCGGTGCAGTATTGCGATCGCGAATGCCAGCGGCTGC
ATTGGTTCATGCACAAGAAGAACTGTGCCCGCCTCCTGGCCCAATCCCAA
GCCCAAGCCCAAGCCCAGCCGCAATCGCAAGCGAAGGGAGCCATTGACAC
GGCCGAGCTGCGCGAGGAACTGTCCAAACTGACTGCGTAAAAGCTTTCTA
GACCAT
BS09908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-RB | 1224 | CG8003-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
CG8003-RA | 1224 | CG8003-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-RB | 1555 | CG8003-RB | 101..1324 | 17..1240 | 6120 | 100 | Plus |
CG8003-RA | 1368 | CG8003-RA | 101..1324 | 17..1240 | 6120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10661849..10662624 | 223..998 | 3880 | 100 | Plus |
3L | 28110227 | 3L | 10662683..10662926 | 997..1240 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 10661575..10661782 | 17..224 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:23:14 has no hits.
BS09908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:11 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:04 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 86..1324 | 7..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:20 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 101..1322 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:11 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 86..1324 | 7..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:28 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8003-RA | 101..1322 | 17..1238 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:28 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10661575..10661781 | 17..223 | 100 | -> | Plus |
3L | 10661850..10662623 | 224..997 | 100 | -> | Plus |
3L | 10662684..10662924 | 998..1238 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:20 Download gff for
BS09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10654675..10654881 | 17..223 | 100 | -> | Plus |
arm_3L | 10654950..10655723 | 224..997 | 100 | -> | Plus |
arm_3L | 10655784..10656024 | 998..1238 | 100 | | Plus |
BS09908.pep Sequence
Translation from 16 to 1239
> BS09908.pep
MTEESKKIVQLDDVQRQLLDHLAKNDTSGFKQLLSGVRNVNFVDDTGMSC
LAHASFKGNREAVQLLLDMGADINLNQHGADYTPLHFAALSGNTHVCRLL
LDAGIKPGSINSVNRTAAQMAAFVGNHACVETINNYVTQSSLEYYTQVHG
QQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSLRKTLA
LMCEKEMQKSHDLNELLAFKFHYQGWILAELIRCEEQFKAQHKEKSGEEA
GDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQI
ATQFGAKDAPPALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKA
VQYCDRECQRLHWFMHKKNCARLLAQSQAQAQAQPQSQAKGAIDTAELRE
ELSKLTA*
BS09908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8003-PB | 407 | CG8003-PB | 1..407 | 1..407 | 2128 | 100 | Plus |
CG8003-PA | 407 | CG8003-PA | 1..407 | 1..407 | 2128 | 100 | Plus |