Clone BS09908 Report

Search the DGRC for BS09908

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG8003-RA
Protein status:BS09908.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09908.3prime Sequence

941 bp (875 high quality bases) assembled on 2006-04-19

> BS09908.3prime
ATGGTCTAGAAAGCTTTTACGCAGTCAGTTTGGACAGTTCCTCGCGCAGC
TCGGCCGTGTCAATGGCTCCCTTCGCTTGCGATTGCGGCTGGGCTTGGGC
TTGGGCTTGGGATTGGGCCAGGAGGCGGGCACAGTTCTTCTTGTGCATGA
ACCAATGCAGCCGCTGGCATTCGCGATCGCAATACTGCACCGCCTTGCAC
TTGGAGCACTTCTTGTCCGGTTTCTCGGCGCCGCAGGTGCTGCAGTAGTT
GCCCTCGTCCGTAATCCACCTCATCCCATTGATGGCATTTCGCAGGACAG
TCAGTGCTGGTGGGGCATCCTTGGCGCCAAATTGCGTTGCGATTTGCCGG
AAGATGGTGCACTCTCTCACGGGAAACTCCCTGGCACATTCGCGCAACGT
GTATTCCACATAGTCCAGCTGGCCCAGCTTGTTCTCCTTGAGCACCCGCT
TCACAAACATCTCGATGAAATCGTTCTTGTTCGCATCGCCCGCCTCCTCG
CCACTTTTCTCCTTGTGCTGCGCCTTGAATTGCTCCTCGCAGCGTATTAG
TTCGGCCAAAATCCAGCCCTGATAATGGAACTTGAAGGCCAGCAGCTCGT
TGAGGTCATGCGACTTCTGCATCTCCTTTTCGCACATCAAAGCCAGCGTC
TTGCGCAGACTGGACAGGATCCTAAGCAATCCCAAGGACTGCACATTCAG
GGCAATCCTCACGGGATGCAGGTTGATTTCGGTGACAAAGGCGTGGAACG
ATTTGAGTAAGCTGGGTGGTATATGCGGCTCCGTCTGCTGGCCATGCACT
TGGGTGTAGTACTCCAAACTCGACTGGGTCACATAGTTGTTGATGGTCTC
CACGCAGGCGTGGTTGCCCACAAAGGCGGCCATTTGGGCGGCGGTCCTGT
TGACACTATTGATGCTACCCGGCTTGAATGCAGCATCCAAA

BS09908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PA 1224 CG8003-RA 314..1224 927..17 4555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 400..1324 941..17 4580 99.8 Minus
CG8003-RA 1368 CG8003-RA 400..1324 941..17 4580 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661942..10662624 941..259 3370 99.6 Minus
3L 28110227 3L 10662683..10662926 260..17 1220 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:50:22 has no hits.

BS09908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:26 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 303..1224 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:11 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 303..1224 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:34:51 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 403..1328 12..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:47 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 403..1328 12..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:47 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10661945..10662623 260..938 99 -> Minus
3L 10662684..10662930 12..259 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:34:51 Download gff for BS09908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10655045..10655723 260..938 99 -> Minus
arm_3L 10655784..10656030 12..259 98   Minus

BS09908.5prime Sequence

922 bp (815 high quality bases) assembled on 2006-04-19

> BS09908.5prime
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAATCGCAACG

BS09908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PA 1224 CG8003-RA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 101..1006 17..922 4530 100 Plus
CG8003-RA 1368 CG8003-RA 101..1006 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661849..10662548 223..922 3500 100 Plus
3L 28110227 3L 10661575..10661782 17..224 1040 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:05:53 has no hits.

BS09908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:27 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:13 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:06 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 90..1006 7..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:01 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 90..1006 7..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:01 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10661564..10661781 7..223 98 -> Plus
3L 10661850..10662548 224..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:06 Download gff for BS09908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10654664..10654881 7..223 98 -> Plus
arm_3L 10654950..10655648 224..922 100   Plus

BS09908.complete Sequence

1256 bp (1256 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636503

> BS09908.complete
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAATCGCAACGCAATTTGGCGCCAAGGATGCCCCACCAG
CACTGACTGTCCTGCGAAATGCCATCAATGGGATGAGGTGGATTACGGAC
GAGGGCAACTACTGCAGCACCTGCGGCGCCGAGAAACCGGACAAGAAGTG
CTCCAAGTGCAAGGCGGTGCAGTATTGCGATCGCGAATGCCAGCGGCTGC
ATTGGTTCATGCACAAGAAGAACTGTGCCCGCCTCCTGGCCCAATCCCAA
GCCCAAGCCCAAGCCCAGCCGCAATCGCAAGCGAAGGGAGCCATTGACAC
GGCCGAGCTGCGCGAGGAACTGTCCAAACTGACTGCGTAAAAGCTTTCTA
GACCAT

BS09908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1224 CG8003-PB 1..1224 17..1240 6120 100 Plus
CG8003-RA 1224 CG8003-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 101..1324 17..1240 6120 100 Plus
CG8003-RA 1368 CG8003-RA 101..1324 17..1240 6120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661849..10662624 223..998 3880 100 Plus
3L 28110227 3L 10662683..10662926 997..1240 1220 100 Plus
3L 28110227 3L 10661575..10661782 17..224 1040 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:23:14 has no hits.

BS09908.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:11 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 17..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:04 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 86..1324 7..1245 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:20 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 101..1322 17..1238 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:11 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 86..1324 7..1245 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:28 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 101..1322 17..1238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:28 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10661575..10661781 17..223 100 -> Plus
3L 10661850..10662623 224..997 100 -> Plus
3L 10662684..10662924 998..1238 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:20 Download gff for BS09908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10654675..10654881 17..223 100 -> Plus
arm_3L 10654950..10655723 224..997 100 -> Plus
arm_3L 10655784..10656024 998..1238 100   Plus

BS09908.pep Sequence

Translation from 16 to 1239

> BS09908.pep
MTEESKKIVQLDDVQRQLLDHLAKNDTSGFKQLLSGVRNVNFVDDTGMSC
LAHASFKGNREAVQLLLDMGADINLNQHGADYTPLHFAALSGNTHVCRLL
LDAGIKPGSINSVNRTAAQMAAFVGNHACVETINNYVTQSSLEYYTQVHG
QQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSLRKTLA
LMCEKEMQKSHDLNELLAFKFHYQGWILAELIRCEEQFKAQHKEKSGEEA
GDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQI
ATQFGAKDAPPALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKA
VQYCDRECQRLHWFMHKKNCARLLAQSQAQAQAQPQSQAKGAIDTAELRE
ELSKLTA*

BS09908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PB 407 CG8003-PB 1..407 1..407 2128 100 Plus
CG8003-PA 407 CG8003-PA 1..407 1..407 2128 100 Plus