Clone Sequence Records
BS09909.3prime Sequence
886 bp (846 high quality bases) assembled on 2006-04-19
> BS09909.3prime
ATGGTCTAGAAAGCTTCTACCTATCCCTGAAGAAGGGGAAGACCTTTTGC
AGCTCCGCCTTCGACTTGCAGGCCTCCACCTGCGGCAGGGTCTCCACCAG
ATTGAGCAGATAAATCTGCAGCTGCTGGCGGCGTTCCTCCACGAAGACCA
GGTTCATGTTGCCGAAATGCTTCTTTGGTGGAAACTCCACGGCACTGACC
ACCGGATGGGTCTTAAGCAGTGACTTGTGCAGCTTGTAGAACTCGCTGTA
GCGTCTGAAAAACGTCCAGTGCTCCAAACGCTGCCTCATCGTGATGTGAA
CTTCGTAAGTGTAGTGGGAACCAGATCGTTGTGTCTTTGCCAGCTTTACA
TGCGGAATGGTTATCAGGAAATTGGAGCACAGCGATGAGCTGGGGTCGAT
GCCGGTCTCTTCAAACTGTTTGGTTAGCCTTCGGATAAGCAGGCGATTTT
GAAGACTAAGCTCCGCCACACGGGTTTCCAGCAGAGCGCATCTTTCGTTT
AGCTGGTTGACATGCTCTTCCAGCGCAGCTTGCTGTTGGCTGTTAGCCAA
GCAATTGGCAGAGGAGGAGGACTTGCTCCACTGCGAGGAGGTGTCGCTTC
GGTCTTCATAGAGCTCTGACTCTCCAACATGCGCGCCAATGTCTGGCAAG
GGCGTCTTGAGAAACTCCAGCTCGGGTTCAATGGGGTCGAAGGGACCCAA
GTTGACTTCTTCCTGTGGCTGGGCTAACTCCTGTTCGATGGATTCCTTGG
AGAGTATTTGCTGAACCTCCACCGACTCGATGGGCTTTAGAGCACCAAGT
AAATCCTCTGTGGAGCTAACGCACTCAATGGGTCGTTCCACCGCAATACC
AGGTCTTTTTTGGCGTCCCACCACCGGCACTGGACT
BS09909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-PA | 1563 | CG5439-RA | 694..1563 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-RA | 1829 | CG5439-RA | 795..1664 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13177944..13178813 | 886..17 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:03:07 has no hits.
BS09909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:28 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-PA | 694..1563 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:14 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-PA | 694..1563 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:15 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 795..1672 | 10..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:57 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 795..1672 | 10..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:57 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13177944..13178821 | 10..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:15 Download gff for
BS09909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13177944..13178821 | 10..886 | 99 | | Minus |
BS09909.5prime Sequence
885 bp (845 high quality bases) assembled on 2006-04-19
> BS09909.5prime
GAAGTTATCAGTCGACATGCCAGAAAATGCATCCAGCTCGATGCCCACAG
AGGCAGGCTTCCGGAGCATGCGCAGCCAACTGGCGGGCAGCACCTTTGGC
CAACGGCGCGAGGACATCTTTCGACGTCTACAGGAAAGTGCGCATAAAAT
CTCACAGAAGTTCAGTGGCAAAGAACTTGCCACTGAGCGGGATGAATCTG
TTCAGGAACTGTGCGAATCCCTCGAGGAACTAATGTCCTACGGACTTAGG
CAATCGGCAGGCACTTCCTCCTTCAGCGCCGCCAGCTTCATCCAGAACAT
GCAGGAGATGGTGTCCGGAAATGCGGGCGGAGGCAGCAACAACAATGACG
CCACTTTCTGGGAATTCTGCCAGACGCATTTGACGCCCCACGAACGTCAG
AGGTATATGGACCTTAAGCAGATCTGGACGAATGTGGGCAGAGGACGTGC
CTTCATACGCGCCACACTGAACGAGAAGCGACTGCATAGCCATGTGCTCA
CCTGGCTGAGCGACGAGGAGCAGCTGCATCGATTTTACACACCTTGGTCC
CTGCTACTCAACGATGAGGCGGCCAAGAAGCTGCCAGAGATCGTAGACTC
CCTCAGTGATGTACTGTTCGCCCTCAATGTGGACACCACTGAGCTTAATG
CACCCAGGAGATCGACGCCAAGTGTTGCCGTCAAAGAGGAACCAATTATA
TTCACCACCAGTCCAGTGCCGGTGGTGGGACGCCAAAAAAGACCTGGTAT
TGCGGTGGAACGACCCATTGAGTGCGTTAGCTCCACAGAGGATTTACTTG
GTGCTCTAAAGCCCATCGAGTCGGTGGAGGTTCAGCAAATACTCTCCAAG
GAATCCATCGAACAGGAGTTAGCCCAGCCACAGGA
BS09909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-PA | 1563 | CG5439-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-RA | 1829 | CG5439-RA | 102..970 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13177251..13178119 | 17..885 | 4345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:37 has no hits.
BS09909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:29 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:15 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:03 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 102..969 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:34 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 102..969 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:34 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13177251..13178118 | 17..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:03 Download gff for
BS09909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13177251..13178118 | 17..884 | 100 | | Plus |
BS09909.complete Sequence
1595 bp (1595 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636504
> BS09909.complete
GAAGTTATCAGTCGACATGCCAGAAAATGCATCCAGCTCGATGCCCACAG
AGGCAGGCTTCCGGAGCATGCGCAGCCAACTGGCGGGCAGCACCTTTGGC
CAACGGCGCGAGGACATCTTTCGACGTCTACAGGAAAGTGCGCATAAAAT
CTCACAGAAGTTCAGTGGCAAAGAACTTGCCACTGAGCGGGATGAATCTG
TTCAGGAACTGTGCGAATCCCTCGAGGAACTAATGTCCTACGGACTTAGG
CAATCGGCAGGCACTTCCTCCTTCAGCGCCGCCAGCTTCATCCAGAACAT
GCAGGAGATGGTGTCCGGAAATGCGGGCGGAGGCAGCAACAACAATGACG
CCACTTTCTGGGAATTCTGCCAGACGCATTTGACGCCCCACGAACGTCAG
AGGTATATGGACCTTAAGCAGATCTGGACGAATGTGGGCAGAGGACGTGC
CTTCATACGCGCCACACTGAACGAGAAGCGACTGCATAGCCATGTGCTCA
CCTGGCTGAGCGACGAGGAGCAGCTGCATCGATTTTACACACCTTGGTCC
CTGCTACTCAACGATGAGGCGGCCAAGAAGCTGCCAGAGATCGTAGACTC
CCTCAGTGATGTACTGTTCGCCCTCAATGTGGACACCACTGAGCTTAATG
CACCCAGGAGATCGACGCCAAGTGTTGCCGTCAAAGAGGAACCAATTATA
TTCACCACCAGTCCAGTGCCGGTGGTGGGACGCCAAAAAAGACCTGGTAT
TGCGGTGGAACGACCCATTGAGTGCGTTAGCTCCACAGAGGATTTACTTG
GTGCTCTAAAGCCCATCGAGTCGGTGGAGGTTCAGCAAATACTCTCCAAG
GAATCCATCGAACAGGAGTTAGCCCAGCCACAGGAAGAAGTCAACTTGGG
TCCCTTCGACCCCATTGAACCCGAGCTGGAGTTTCTCAAGACGCCCTTGC
CAGACATTGGCGCGCATGTTGGAGAGTCAGAGCTCTATGAAGACCGAAGC
GACACCTCCTCGCAGTGGAGCAAGTCCTCCTCCTCTGCCAATTGCTTGGC
TAACAGCCAACAGCAAGCTGCGCTGGAAGAGCATGTCAACCAGCTAAACG
AAAGATGCGCTCTGCTGGAAACCCGTGTGGCGGAGCTTAGTCTTCAAAAT
CGCCTGCTTATCCGAAGGCTAACCAAACAGTTTGAAGAGACCGGCATCGA
CCCCAGCTCATCGCTGTGCTCCAATTTCCTGATAACCATTCCGCATGTAA
AGCTGGCAAAGACACAACGATCTGGTTCCCACTACACTTACGAAGTTCAC
ATCACGATGAGGCAGCGTTTGGAGCACTGGACGTTTTTCAGACGCTACAG
CGAGTTCTACAAGCTGCACAAGTCACTGCTTAAGACCCATCCGGTGGTCA
GTGCCGTGGAGTTTCCACCAAAGAAGCATTTCGGCAACATGAACCTGGTC
TTCGTGGAGGAACGCCGCCAGCAGCTGCAGATTTATCTGCTCAATCTGGT
GGAGACCCTGCCGCAGGTGGAGGCCTGCAAGTCGAAGGCGGAGCTGCAAA
AGGTCTTCCCCTTCTTCAGGGATAGGTAGAAGCTTTCTAGACCAT
BS09909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-RA | 1563 | CG5439-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-RA | 1829 | CG5439-RA | 102..1664 | 17..1579 | 7815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13177251..13178813 | 17..1579 | 7815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:43:45 has no hits.
BS09909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:56 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:47 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 80..1650 | 17..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:30 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 102..1664 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:56 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 80..1650 | 17..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:01 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5439-RA | 102..1664 | 17..1579 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:01 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13177251..13178813 | 17..1579 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:30 Download gff for
BS09909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13177251..13178813 | 17..1579 | 100 | | Plus |
BS09909.pep Sequence
Translation from 16 to 1578
> BS09909.pep
MPENASSSMPTEAGFRSMRSQLAGSTFGQRREDIFRRLQESAHKISQKFS
GKELATERDESVQELCESLEELMSYGLRQSAGTSSFSAASFIQNMQEMVS
GNAGGGSNNNDATFWEFCQTHLTPHERQRYMDLKQIWTNVGRGRAFIRAT
LNEKRLHSHVLTWLSDEEQLHRFYTPWSLLLNDEAAKKLPEIVDSLSDVL
FALNVDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKRPGIAVERP
IECVSSTEDLLGALKPIESVEVQQILSKESIEQELAQPQEEVNLGPFDPI
EPELEFLKTPLPDIGAHVGESELYEDRSDTSSQWSKSSSSANCLANSQQQ
AALEEHVNQLNERCALLETRVAELSLQNRLLIRRLTKQFEETGIDPSSSL
CSNFLITIPHVKLAKTQRSGSHYTYEVHITMRQRLEHWTFFRRYSEFYKL
HKSLLKTHPVVSAVEFPPKKHFGNMNLVFVEERRQQLQIYLLNLVETLPQ
VEACKSKAELQKVFPFFRDR*
BS09909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5439-PA | 520 | CG5439-PA | 1..520 | 1..520 | 2671 | 100 | Plus |
