Clone BS09916 Report

Search the DGRC for BS09916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptras-RB
Protein status:BS09916.pep: full length peptide match
Sequenced Size:1373

Clone Sequence Records

BS09916.3prime Sequence

921 bp (835 high quality bases) assembled on 2006-04-19

> BS09916.3prime
ATGGTCTAGAAAGCTTTTAGAAGAGTCGCTTCTCGTAGCTGAAGAGGCCA
TGGACATTGCCTTCCAGTTGAGCGGAATGGGTGCGCTTCATGAAGCGCAG
TTGGCCATTATAGATCATATCCCTCAATTTATTAATGGAGTTAGCACCGA
TGTCCTGACAACTGTGCTGCAGTCCGCACTCCAAATAGGGTAGATAGCGC
AGCACACTGCCCTTGTCCACGATGCTGCCACTGACGCCCTGTGCCACCTT
CATTTTATCCATCTCGTTGTGGTAGTAGCGCGACATGGCAGCGCCCTTGG
CATCGCCGCGCTCCATGGCCTCCAGGGAGCCCATGCCGCGGTACTTCTTA
AGGCGCACTCCGTCGGAGAAGAAGTACTCGCCCGGTGCCTCCGATGTGCC
CGCCAGCAGGGAGCCCATCATTACAGCGCTGGCTCCCAATGCAATAGCCT
TCACAATGTGTCCAATGGACTGGATGCCTCCGTCCGCGATCACTGGCACT
CCGAATTGGCGAGCGTACGTGGACACCTGGTAGACAGCAGTGGCCTGAGG
ACATCCGCAGGCCATCACCTCCTGGGTGATGCAGATGGAACCGGAACCCA
TGCCCACACGCAGTCCATCGACGCCGGCATCAATGAGATTTTTGGCCTGG
GCACGTGTTACCACATTGCCACCAATGACCTGTAGTTCGGGATAGGTCTC
CTTAATGTACTTGATCATCTCCACCTGGTAGACGGAGTTGCCCTGCGATG
AATCAAGGATGATAACGTCCACGCCGTTGGCCACCAGCAGAGCCAGGCGC
GCCTTGTCCTCCGATCGCGTTCCGATGGCAGCGCCGACGAGGAGCTGCTT
ATTGGAGTCCTTGGAGGCATTCGGGTAGGAGCGGGCCTTCTCAAATCCGT
GCGGGCAATCATGGGCACCAG

BS09916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1799-PC 1614 ras-RC 740..1614 891..17 4350 99.8 Minus
CG1799-PA 1614 ras-RA 740..1614 891..17 4350 99.8 Minus
CG1799-PB 1341 ras-RB 467..1341 891..17 4350 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
ras-RD 2810 CG1799-RD 1011..1916 921..17 4475 99.7 Minus
ras-RE 2415 CG1799-RE 907..1812 921..17 4475 99.7 Minus
ras-RA 2519 CG1799-RA 1011..1916 921..17 4475 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10747485..10748027 664..122 2715 100 Minus
X 23542271 X 10746814..10747072 921..664 1230 99.2 Minus
X 23542271 X 10748096..10748203 124..17 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 01:48:38 has no hits.

BS09916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:41 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
ras-PB 436..1341 17..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:31 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1799-PB 436..1341 17..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:11:11 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
ras-RC 813..1718 17..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:12 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1011..1916 17..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:12 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10746814..10747072 664..921 99 -> Minus
X 10747486..10748026 123..663 100 -> Minus
X 10748098..10748203 17..122 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:11:11 Download gff for BS09916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10640847..10641105 664..921 99 -> Minus
arm_X 10641519..10642059 123..663 100 -> Minus
arm_X 10642131..10642236 17..122 99   Minus

BS09916.5prime Sequence

934 bp (808 high quality bases) assembled on 2006-04-19

> BS09916.5prime
GAAGTTATCAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCG
CCATGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCG
GAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTT
CATGCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGT
TGGAGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAAC
GGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGA
CTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCG
AACTGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATT
CTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGA
ACTGGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACC
CGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATC
GGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGG
CGTGGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGG
TGGAGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATT
GGTGGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGG
CGTCGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCC
AGGAGGTGATGGCCTGCGGATGTCCTCANGCCACTGCTGTCTACCANGTG
TCCACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAAGCAT
CCAGTCCATTGGACACATTGTGAAGGCTATTGCA

BS09916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1799-PC 1614 ras-RC 273..1191 16..934 4532 99.6 Plus
CG1799-PA 1614 ras-RA 273..1191 16..934 4532 99.6 Plus
CG1799-PB 1341 ras-RB 1..918 17..934 4527 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
ras-RD 2810 CG1799-RD 575..1493 16..934 4558 99.7 Plus
ras-RE 2415 CG1799-RE 471..1389 16..934 4558 99.7 Plus
ras-RA 2519 CG1799-RA 575..1493 16..934 4558 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10746420..10747072 58..710 3265 100 Plus
X 23542271 X 10747485..10747709 710..934 1088 98.7 Plus
X 23542271 X 10746184..10746226 16..58 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:08:32 has no hits.

BS09916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:42 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
ras-PC 268..1190 12..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:33 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1799-PA 268..1190 12..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:06 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
ras-RC 372..1294 12..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:16 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
ras-RA 570..1492 12..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:16 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10747486..10747708 711..933 98   Plus
X 10746179..10746226 12..58 95 -> Plus
X 10746421..10747072 59..710 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:06 Download gff for BS09916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10641519..10641741 711..933 98   Plus
arm_X 10640212..10640259 12..58 95 -> Plus
arm_X 10640454..10641105 59..710 100 -> Plus

BS09916.complete Sequence

1373 bp assembled on 2008-08-15

GenBank Submission: FJ636505

> BS09916.complete
GAAGTTATCAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCG
CCATGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCG
GAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTT
CATGCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGT
TGGAGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAAC
GGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGA
CTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCG
AACTGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATT
CTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGA
ACTGGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACC
CGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATC
GGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGG
CGTGGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGG
TGGAGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATT
GGTGGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGG
CGTCGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCC
AGGAGGTGATGGCCTGCGGATGTCCTCAGGCCACTGCTGTCTACCAGGTG
TCCACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAGGCAT
CCAGTCCATTGGACACATTGTGAAGGCTATTGCATTGGGAGCCAGCGCTG
TAATGATGGGCTCCCTGCTGGCGGGCACATCGGAGGCACCGGGCGAGTAC
TTCTTCTCCGACGGAGTGCGCCTTAAGAAGTACCGCGGCATGGGCTCCCT
GGAGGCCATGGAGCGCGGCGATGCCAAGGGCGCTGCCATGTCGCGCTACT
ACCACAACGAGATGGATAAAATGAAGGTGGCACAGGGCGTCAGTGGCAGC
ATCGTGGACAAGGGCAGTGTGCTGCGCTATCTACCCTATTTGGAGTGCGG
ACTGCAGCACAGTTGTCAGGACATCGGTGCTAACTCCATTAATAAATTGA
GGGATATGATCTATAATGGCCAACTGCGCTTCATGAAGCGCACCCATTCC
GCTCAACTGGAAGGCAATGTCCATGGCCTCTTCAGCTACGAGAAGCGACT
CTTCTAAAAGCTTTCTAGACCAT

BS09916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
ras-RD 1614 CG1799-PD 273..1614 16..1357 6695 99.9 Plus
ras-RE 1614 CG1799-PE 273..1614 16..1357 6695 99.9 Plus
ras-RA 1614 CG1799-PA 273..1614 16..1357 6695 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
ras-RD 2810 CG1799-RD 575..1916 16..1357 6695 99.9 Plus
ras-RE 2415 CG1799-RE 471..1812 16..1357 6695 99.9 Plus
ras-RA 2519 CG1799-RA 575..1916 16..1357 6695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10746420..10747072 58..710 3265 100 Plus
X 23542271 X 10747485..10748027 710..1252 2715 100 Plus
X 23542271 X 10748096..10748203 1250..1357 525 99.1 Plus
X 23542271 X 10746184..10746226 16..58 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:54:28 has no hits.

BS09916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:19 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RB 547..1893 12..1357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:46 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RC 378..1716 17..1355 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:26 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RB 553..1891 17..1355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:41 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 576..1914 17..1355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:41 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
X 10746185..10746226 17..58 100 -> Plus
X 10746421..10747072 59..710 100 -> Plus
X 10747486..10748026 711..1251 100 -> Plus
X 10748098..10748201 1252..1355 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:46 Download gff for BS09916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10640218..10640259 17..58 100 -> Plus
arm_X 10640454..10641105 59..710 100 -> Plus
arm_X 10641519..10642059 711..1251 100 -> Plus
arm_X 10642131..10642234 1252..1355 99   Plus

BS09916.pep Sequence

Translation from 16 to 1356

> BS09916.pep
MDTVTESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPS
VMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQ
PEVLLADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMI
ARTDLKKARSYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVII
LDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLR
VGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGH
IVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMER
GDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSC
QDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*

BS09916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
ras-PD 537 CG1799-PD 92..537 1..446 2273 100 Plus
ras-PE 537 CG1799-PE 92..537 1..446 2273 100 Plus
ras-PA 537 CG1799-PA 92..537 1..446 2273 100 Plus
ras-PC 537 CG1799-PC 92..537 1..446 2273 100 Plus