Clone Sequence Records
BS09916.3prime Sequence
921 bp (835 high quality bases) assembled on 2006-04-19
> BS09916.3prime
ATGGTCTAGAAAGCTTTTAGAAGAGTCGCTTCTCGTAGCTGAAGAGGCCA
TGGACATTGCCTTCCAGTTGAGCGGAATGGGTGCGCTTCATGAAGCGCAG
TTGGCCATTATAGATCATATCCCTCAATTTATTAATGGAGTTAGCACCGA
TGTCCTGACAACTGTGCTGCAGTCCGCACTCCAAATAGGGTAGATAGCGC
AGCACACTGCCCTTGTCCACGATGCTGCCACTGACGCCCTGTGCCACCTT
CATTTTATCCATCTCGTTGTGGTAGTAGCGCGACATGGCAGCGCCCTTGG
CATCGCCGCGCTCCATGGCCTCCAGGGAGCCCATGCCGCGGTACTTCTTA
AGGCGCACTCCGTCGGAGAAGAAGTACTCGCCCGGTGCCTCCGATGTGCC
CGCCAGCAGGGAGCCCATCATTACAGCGCTGGCTCCCAATGCAATAGCCT
TCACAATGTGTCCAATGGACTGGATGCCTCCGTCCGCGATCACTGGCACT
CCGAATTGGCGAGCGTACGTGGACACCTGGTAGACAGCAGTGGCCTGAGG
ACATCCGCAGGCCATCACCTCCTGGGTGATGCAGATGGAACCGGAACCCA
TGCCCACACGCAGTCCATCGACGCCGGCATCAATGAGATTTTTGGCCTGG
GCACGTGTTACCACATTGCCACCAATGACCTGTAGTTCGGGATAGGTCTC
CTTAATGTACTTGATCATCTCCACCTGGTAGACGGAGTTGCCCTGCGATG
AATCAAGGATGATAACGTCCACGCCGTTGGCCACCAGCAGAGCCAGGCGC
GCCTTGTCCTCCGATCGCGTTCCGATGGCAGCGCCGACGAGGAGCTGCTT
ATTGGAGTCCTTGGAGGCATTCGGGTAGGAGCGGGCCTTCTCAAATCCGT
GCGGGCAATCATGGGCACCAG
BS09916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1799-PC | 1614 | ras-RC | 740..1614 | 891..17 | 4350 | 99.8 | Minus |
CG1799-PA | 1614 | ras-RA | 740..1614 | 891..17 | 4350 | 99.8 | Minus |
CG1799-PB | 1341 | ras-RB | 467..1341 | 891..17 | 4350 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ras-RD | 2810 | CG1799-RD | 1011..1916 | 921..17 | 4475 | 99.7 | Minus |
ras-RE | 2415 | CG1799-RE | 907..1812 | 921..17 | 4475 | 99.7 | Minus |
ras-RA | 2519 | CG1799-RA | 1011..1916 | 921..17 | 4475 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10747485..10748027 | 664..122 | 2715 | 100 | Minus |
X | 23542271 | X | 10746814..10747072 | 921..664 | 1230 | 99.2 | Minus |
X | 23542271 | X | 10748096..10748203 | 124..17 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:48:38 has no hits.
BS09916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:41 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-PB | 436..1341 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:31 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1799-PB | 436..1341 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:11:11 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RC | 813..1718 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:12 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RA | 1011..1916 | 17..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:12 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10746814..10747072 | 664..921 | 99 | -> | Minus |
X | 10747486..10748026 | 123..663 | 100 | -> | Minus |
X | 10748098..10748203 | 17..122 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:11:11 Download gff for
BS09916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10640847..10641105 | 664..921 | 99 | -> | Minus |
arm_X | 10641519..10642059 | 123..663 | 100 | -> | Minus |
arm_X | 10642131..10642236 | 17..122 | 99 | | Minus |
BS09916.5prime Sequence
934 bp (808 high quality bases) assembled on 2006-04-19
> BS09916.5prime
GAAGTTATCAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCG
CCATGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCG
GAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTT
CATGCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGT
TGGAGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAAC
GGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGA
CTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCG
AACTGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATT
CTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGA
ACTGGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACC
CGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATC
GGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGG
CGTGGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGG
TGGAGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATT
GGTGGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGG
CGTCGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCC
AGGAGGTGATGGCCTGCGGATGTCCTCANGCCACTGCTGTCTACCANGTG
TCCACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAAGCAT
CCAGTCCATTGGACACATTGTGAAGGCTATTGCA
BS09916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1799-PC | 1614 | ras-RC | 273..1191 | 16..934 | 4532 | 99.6 | Plus |
CG1799-PA | 1614 | ras-RA | 273..1191 | 16..934 | 4532 | 99.6 | Plus |
CG1799-PB | 1341 | ras-RB | 1..918 | 17..934 | 4527 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ras-RD | 2810 | CG1799-RD | 575..1493 | 16..934 | 4558 | 99.7 | Plus |
ras-RE | 2415 | CG1799-RE | 471..1389 | 16..934 | 4558 | 99.7 | Plus |
ras-RA | 2519 | CG1799-RA | 575..1493 | 16..934 | 4558 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10746420..10747072 | 58..710 | 3265 | 100 | Plus |
X | 23542271 | X | 10747485..10747709 | 710..934 | 1088 | 98.7 | Plus |
X | 23542271 | X | 10746184..10746226 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:08:32 has no hits.
BS09916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:42 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-PC | 268..1190 | 12..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:33 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1799-PA | 268..1190 | 12..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:06 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RC | 372..1294 | 12..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:16 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RA | 570..1492 | 12..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:16 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10747486..10747708 | 711..933 | 98 | | Plus |
X | 10746179..10746226 | 12..58 | 95 | -> | Plus |
X | 10746421..10747072 | 59..710 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:06 Download gff for
BS09916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10641519..10641741 | 711..933 | 98 | | Plus |
arm_X | 10640212..10640259 | 12..58 | 95 | -> | Plus |
arm_X | 10640454..10641105 | 59..710 | 100 | -> | Plus |
BS09916.complete Sequence
1373 bp assembled on 2008-08-15
GenBank Submission: FJ636505
> BS09916.complete
GAAGTTATCAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCG
CCATGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCG
GAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTT
CATGCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGT
TGGAGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAAC
GGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGA
CTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCG
AACTGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATT
CTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGA
ACTGGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACC
CGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATC
GGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGG
CGTGGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGG
TGGAGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATT
GGTGGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGG
CGTCGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCC
AGGAGGTGATGGCCTGCGGATGTCCTCAGGCCACTGCTGTCTACCAGGTG
TCCACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAGGCAT
CCAGTCCATTGGACACATTGTGAAGGCTATTGCATTGGGAGCCAGCGCTG
TAATGATGGGCTCCCTGCTGGCGGGCACATCGGAGGCACCGGGCGAGTAC
TTCTTCTCCGACGGAGTGCGCCTTAAGAAGTACCGCGGCATGGGCTCCCT
GGAGGCCATGGAGCGCGGCGATGCCAAGGGCGCTGCCATGTCGCGCTACT
ACCACAACGAGATGGATAAAATGAAGGTGGCACAGGGCGTCAGTGGCAGC
ATCGTGGACAAGGGCAGTGTGCTGCGCTATCTACCCTATTTGGAGTGCGG
ACTGCAGCACAGTTGTCAGGACATCGGTGCTAACTCCATTAATAAATTGA
GGGATATGATCTATAATGGCCAACTGCGCTTCATGAAGCGCACCCATTCC
GCTCAACTGGAAGGCAATGTCCATGGCCTCTTCAGCTACGAGAAGCGACT
CTTCTAAAAGCTTTCTAGACCAT
BS09916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ras-RD | 1614 | CG1799-PD | 273..1614 | 16..1357 | 6695 | 99.9 | Plus |
ras-RE | 1614 | CG1799-PE | 273..1614 | 16..1357 | 6695 | 99.9 | Plus |
ras-RA | 1614 | CG1799-PA | 273..1614 | 16..1357 | 6695 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ras-RD | 2810 | CG1799-RD | 575..1916 | 16..1357 | 6695 | 99.9 | Plus |
ras-RE | 2415 | CG1799-RE | 471..1812 | 16..1357 | 6695 | 99.9 | Plus |
ras-RA | 2519 | CG1799-RA | 575..1916 | 16..1357 | 6695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10746420..10747072 | 58..710 | 3265 | 100 | Plus |
X | 23542271 | X | 10747485..10748027 | 710..1252 | 2715 | 100 | Plus |
X | 23542271 | X | 10748096..10748203 | 1250..1357 | 525 | 99.1 | Plus |
X | 23542271 | X | 10746184..10746226 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:54:28 has no hits.
BS09916.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:19 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RB | 547..1893 | 12..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:46 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RC | 378..1716 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:26 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RB | 553..1891 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:41 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ras-RA | 576..1914 | 17..1355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:41 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10746185..10746226 | 17..58 | 100 | -> | Plus |
X | 10746421..10747072 | 59..710 | 100 | -> | Plus |
X | 10747486..10748026 | 711..1251 | 100 | -> | Plus |
X | 10748098..10748201 | 1252..1355 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:46 Download gff for
BS09916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10640218..10640259 | 17..58 | 100 | -> | Plus |
arm_X | 10640454..10641105 | 59..710 | 100 | -> | Plus |
arm_X | 10641519..10642059 | 711..1251 | 100 | -> | Plus |
arm_X | 10642131..10642234 | 1252..1355 | 99 | | Plus |
BS09916.pep Sequence
Translation from 16 to 1356
> BS09916.pep
MDTVTESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPS
VMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQ
PEVLLADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMI
ARTDLKKARSYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVII
LDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLR
VGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGH
IVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMER
GDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSC
QDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*
BS09916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ras-PD | 537 | CG1799-PD | 92..537 | 1..446 | 2273 | 100 | Plus |
ras-PE | 537 | CG1799-PE | 92..537 | 1..446 | 2273 | 100 | Plus |
ras-PA | 537 | CG1799-PA | 92..537 | 1..446 | 2273 | 100 | Plus |
ras-PC | 537 | CG1799-PC | 92..537 | 1..446 | 2273 | 100 | Plus |