Clone BS09921 Report

Search the DGRC for BS09921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG11284-RA
Protein status:BS09921.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09921.3prime Sequence

783 bp (782 high quality bases) assembled on 2006-04-19

> BS09921.3prime
ATGGTCTAGAAAGCTTTTATAACTTGGACTTTGGATTGGTGTTGCGCGCA
AAGAAGATTTCCGGATCCTTGTGCGGACGCTGGATCTCGCGATAATTGTT
GACTATCTTTTTGGACTCATCTTTGGGACACGATTGCAAATTGCGAAACA
CCTGAACCTGGCCGCGAGACACATAGATGGGGGTGCGGTATATGATCCAG
GTGACACTCTCAAAGTACGGCGCCGTTGTCAGCGAACCCTTGTACGTGTA
ATAATGTTTGCTCAGCTCCTGCAGACCAATCCATGATAGGCAATCGGAAT
CCAGCGATGCACTCGTATGGATCTTTTGAACGATGCGGATGCCCTCGGTG
ATCTTCTTGAACTCGGGACAGTCCTTCTCGCCGCAGGCCTGAATAAAGAA
TGCGACGACGGCCAGGCCATCGGGCTTGTTCTTGGCCTCCGTGAAGTCCT
TGTACTTCGAATTGTAGTGGACGGCATGGGCCTCCATTGAGTACTTCATG
CCCTCCAGTGTATGCTCGCAGCCGGATTCATCGCAGTCCGACCAATGGAA
GTGCAGCTGCTCGAACACGTACATGTCCTGCTCCAGGGCACCGCCGATTA
TGTATGGCTGTTGTTTTCGCTTGCTGAATGTGACCATTGCGGAGGTGCCT
GTGTTCTGTACCCGGGCCACGCCCACCGGCTCCCAATGGCCATGGTACTC
TAGTGGATCCACATCGTCAATGTGCTCGATGGCACGGTTGCTGATCTCAA
TTGGGGATTGTACGGGCATGTCGACTGATAACT

BS09921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-PA 753 CG11284-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-RE 2309 CG11284-RE 974..1726 769..17 3765 100 Minus
CG11284-RD 1650 CG11284-RD 315..1067 769..17 3765 100 Minus
CG11284-RC 1897 CG11284-RC 562..1314 769..17 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8687268..8687742 769..295 2375 100 Minus
X 23542271 X 8688034..8688177 160..17 720 100 Minus
X 23542271 X 8687817..8687956 295..156 700 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:40:34 has no hits.

BS09921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:49 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:41 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:49:10 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-RB 460..1225 11..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:12 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-RC 556..1321 11..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:12 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8687262..8687742 295..776 99 -> Minus
X 8687818..8687954 158..294 100 -> Minus
X 8688037..8688184 11..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:49:10 Download gff for BS09921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8581295..8581775 295..776 99 -> Minus
arm_X 8581851..8581987 158..294 100 -> Minus
arm_X 8582070..8582217 11..157 97   Minus

BS09921.5prime Sequence

783 bp (782 high quality bases) assembled on 2006-04-19

> BS09921.5prime
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTATAAAAGCTTTCTAGACC

BS09921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-PA 753 CG11284-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-RE 2309 CG11284-RE 974..1726 17..769 3765 100 Plus
CG11284-RD 1650 CG11284-RD 315..1067 17..769 3765 100 Plus
CG11284-RC 1897 CG11284-RC 562..1314 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8687268..8687742 17..491 2375 100 Plus
X 23542271 X 8688034..8688177 626..769 720 100 Plus
X 23542271 X 8687817..8687956 491..630 700 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:04:05 has no hits.

BS09921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:50 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:43 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:59 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-RB 460..1225 10..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:23 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11284-RC 556..1321 10..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:23 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8687262..8687742 10..491 99 -> Plus
X 8687818..8687954 492..628 100 -> Plus
X 8688037..8688184 629..775 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:59 Download gff for BS09921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8581295..8581775 10..491 99 -> Plus
arm_X 8581851..8581987 492..628 100 -> Plus
arm_X 8582070..8582217 629..775 97   Plus

BS09921.complete Sequence

785 bp (785 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636506

> BS09921.complete
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTATAAAAGCTTTCTAGACCAT

BS09921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-RE 753 CG11284-PE 1..753 17..769 3765 100 Plus
CG11284-RD 753 CG11284-PD 1..753 17..769 3765 100 Plus
CG11284-RC 753 CG11284-PC 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-RE 2309 CG11284-RE 974..1726 17..769 3765 100 Plus
CG11284-RD 1650 CG11284-RD 315..1067 17..769 3765 100 Plus
CG11284-RC 1897 CG11284-RC 562..1314 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8687268..8687742 17..491 2375 100 Plus
X 23542271 X 8688034..8688177 626..769 720 100 Plus
X 23542271 X 8687817..8687956 491..630 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:04:51 has no hits.

BS09921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:57 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:48 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 638..1403 10..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:06 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RB 466..1216 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:57 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 638..1403 10..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:05 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RC 562..1312 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:05 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
X 8687268..8687742 17..491 100 -> Plus
X 8687818..8687954 492..628 100 -> Plus
X 8688037..8688175 629..767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:06 Download gff for BS09921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8581301..8581775 17..491 100 -> Plus
arm_X 8581851..8581987 492..628 100 -> Plus
arm_X 8582070..8582208 629..767 100   Plus

BS09921.pep Sequence

Translation from 16 to 768

> BS09921.pep
MPVQSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSK
RKQQPYIIGGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAV
HYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKDCPEFKKITEGIRIVQKI
HTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRTPIYV
SRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIFFARNTNPKSKL
*

BS09921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-PE 250 CG11284-PE 1..250 1..250 1351 100 Plus
CG11284-PD 250 CG11284-PD 1..250 1..250 1351 100 Plus
CG11284-PC 250 CG11284-PC 1..250 1..250 1351 100 Plus
CG11284-PB 250 CG11284-PB 1..250 1..250 1351 100 Plus
CG11284-PA 250 CG11284-PA 1..250 1..250 1351 100 Plus