Clone Sequence Records
BS09921.3prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BS09921.3prime
ATGGTCTAGAAAGCTTTTATAACTTGGACTTTGGATTGGTGTTGCGCGCA
AAGAAGATTTCCGGATCCTTGTGCGGACGCTGGATCTCGCGATAATTGTT
GACTATCTTTTTGGACTCATCTTTGGGACACGATTGCAAATTGCGAAACA
CCTGAACCTGGCCGCGAGACACATAGATGGGGGTGCGGTATATGATCCAG
GTGACACTCTCAAAGTACGGCGCCGTTGTCAGCGAACCCTTGTACGTGTA
ATAATGTTTGCTCAGCTCCTGCAGACCAATCCATGATAGGCAATCGGAAT
CCAGCGATGCACTCGTATGGATCTTTTGAACGATGCGGATGCCCTCGGTG
ATCTTCTTGAACTCGGGACAGTCCTTCTCGCCGCAGGCCTGAATAAAGAA
TGCGACGACGGCCAGGCCATCGGGCTTGTTCTTGGCCTCCGTGAAGTCCT
TGTACTTCGAATTGTAGTGGACGGCATGGGCCTCCATTGAGTACTTCATG
CCCTCCAGTGTATGCTCGCAGCCGGATTCATCGCAGTCCGACCAATGGAA
GTGCAGCTGCTCGAACACGTACATGTCCTGCTCCAGGGCACCGCCGATTA
TGTATGGCTGTTGTTTTCGCTTGCTGAATGTGACCATTGCGGAGGTGCCT
GTGTTCTGTACCCGGGCCACGCCCACCGGCTCCCAATGGCCATGGTACTC
TAGTGGATCCACATCGTCAATGTGCTCGATGGCACGGTTGCTGATCTCAA
TTGGGGATTGTACGGGCATGTCGACTGATAACT
BS09921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PA | 753 | CG11284-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1726 | 769..17 | 3765 | 100 | Minus |
CG11284-RD | 1650 | CG11284-RD | 315..1067 | 769..17 | 3765 | 100 | Minus |
CG11284-RC | 1897 | CG11284-RC | 562..1314 | 769..17 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 769..295 | 2375 | 100 | Minus |
X | 23542271 | X | 8688034..8688177 | 160..17 | 720 | 100 | Minus |
X | 23542271 | X | 8687817..8687956 | 295..156 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:40:34 has no hits.
BS09921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:49 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:41 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:49:10 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 460..1225 | 11..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:12 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 556..1321 | 11..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:12 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687262..8687742 | 295..776 | 99 | -> | Minus |
X | 8687818..8687954 | 158..294 | 100 | -> | Minus |
X | 8688037..8688184 | 11..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:49:10 Download gff for
BS09921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581295..8581775 | 295..776 | 99 | -> | Minus |
arm_X | 8581851..8581987 | 158..294 | 100 | -> | Minus |
arm_X | 8582070..8582217 | 11..157 | 97 | | Minus |
BS09921.5prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BS09921.5prime
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTATAAAAGCTTTCTAGACC
BS09921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PA | 753 | CG11284-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1726 | 17..769 | 3765 | 100 | Plus |
CG11284-RD | 1650 | CG11284-RD | 315..1067 | 17..769 | 3765 | 100 | Plus |
CG11284-RC | 1897 | CG11284-RC | 562..1314 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 17..491 | 2375 | 100 | Plus |
X | 23542271 | X | 8688034..8688177 | 626..769 | 720 | 100 | Plus |
X | 23542271 | X | 8687817..8687956 | 491..630 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:04:05 has no hits.
BS09921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:50 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:43 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:59 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 460..1225 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:23 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 556..1321 | 10..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:23 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687262..8687742 | 10..491 | 99 | -> | Plus |
X | 8687818..8687954 | 492..628 | 100 | -> | Plus |
X | 8688037..8688184 | 629..775 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:59 Download gff for
BS09921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581295..8581775 | 10..491 | 99 | -> | Plus |
arm_X | 8581851..8581987 | 492..628 | 100 | -> | Plus |
arm_X | 8582070..8582217 | 629..775 | 97 | | Plus |
BS09921.complete Sequence
785 bp (785 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636506
> BS09921.complete
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTATAAAAGCTTTCTAGACCAT
BS09921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 753 | CG11284-PE | 1..753 | 17..769 | 3765 | 100 | Plus |
CG11284-RD | 753 | CG11284-PD | 1..753 | 17..769 | 3765 | 100 | Plus |
CG11284-RC | 753 | CG11284-PC | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1726 | 17..769 | 3765 | 100 | Plus |
CG11284-RD | 1650 | CG11284-RD | 315..1067 | 17..769 | 3765 | 100 | Plus |
CG11284-RC | 1897 | CG11284-RC | 562..1314 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 17..491 | 2375 | 100 | Plus |
X | 23542271 | X | 8688034..8688177 | 626..769 | 720 | 100 | Plus |
X | 23542271 | X | 8687817..8687956 | 491..630 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:51 has no hits.
BS09921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:57 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:48 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 638..1403 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:06 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 466..1216 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:57 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 638..1403 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:05 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 562..1312 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:05 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687268..8687742 | 17..491 | 100 | -> | Plus |
X | 8687818..8687954 | 492..628 | 100 | -> | Plus |
X | 8688037..8688175 | 629..767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:06 Download gff for
BS09921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581301..8581775 | 17..491 | 100 | -> | Plus |
arm_X | 8581851..8581987 | 492..628 | 100 | -> | Plus |
arm_X | 8582070..8582208 | 629..767 | 100 | | Plus |
BS09921.pep Sequence
Translation from 16 to 768
> BS09921.pep
MPVQSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSK
RKQQPYIIGGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAV
HYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKDCPEFKKITEGIRIVQKI
HTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRTPIYV
SRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIFFARNTNPKSKL
*
BS09921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PE | 250 | CG11284-PE | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PD | 250 | CG11284-PD | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PC | 250 | CG11284-PC | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PB | 250 | CG11284-PB | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PA | 250 | CG11284-PA | 1..250 | 1..250 | 1351 | 100 | Plus |