Clone Sequence Records
BS09923.3prime Sequence
1003 bp (807 high quality bases) assembled on 2006-04-19
> BS09923.3prime
ATGGTCTAGAAAGCTTTTAGTCCTCTGCGGTGGGACGCGTGAGGCGCTTG
GCGCCTCGGTTTGGTGGCCCCTTGGGCTTGGCAAAAGCCGGTCGGTGTAG
AATCTTCTTTGGGTGCAGCTCGTCCTGCAAGAAGGCTTCGGTCAGCTCGC
TGCCGCTGTCGATTTCAAGCTTCTTAACAACCTCCACGCCAAGGGCCGCG
AGCTCGTCGAGAAAAGGAGCCTTACAGCTTGAGTACATCATGCGCTCGCG
CACGGAGCAGGAATATCCAGGCATGGAGTAGACGAACACGTACGACTCAA
AGTAGTCGCCCTCGTGCGTGTGCCGAAACAGGAAGAGGTGGTATCGTGCA
TGATCCTCGGGCACTTGCTTCGGCAGATCGGCGAGCTCCACTTTGGCCGC
ACGCGAAACATGGATCTGTTCCTCCTCCAGATCGATGCGGAACTGAAGGT
AGTCGTGCTTGCCGCGCACCAAATCCTGAACGGCAGCCACGGTTGCCTCG
CTCAGCGGGCAATTGATCCCACCCAGAGTTTGGTGCCGCGTATTCGTATT
GATCTCAGTGTGAACCTCTGTCTTTCGCAGCTCTTTCAGCTCCTCCTCCC
TGCTGGTCAATGGAGCTGGGGCTGCGAAATCCTGCTTGTGCCGGCGATAG
CCCTCCAGCGTGCACTCATCCAGAGTGGTGGCATGCAGCTCCTCTGTGAT
GTATGCTGATCCGAACTCCGTTTTCAACGTGGCCTTCGTGGAAGCGTATA
CCATCTTCTGTCGGATGCTGGCCGTGTCCGGCGTCCAGCTGATAAGTAGC
CAACTGTAGCCCAGCGGGATCTTGGCGTCCAGGCGATAGAGAATATAGCA
GGGCACATCCTTTTCCAGTAGGGGACCTATAAGCTTGTCGTAGTCGCGCT
CCCAATCTTTTTCGTCTCCGCCGTGGCGCCGCAACTAAGCTGCTCATTCT
CGATCGAAACTTTTATCACGCGAAATTTACCATTCTTCCCTTTGCCGAAC
ACC
BS09923.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3172-PA | 1032 | twf-RA | 142..1032 | 907..17 | 4455 | 100 | Minus |
CG3172-PA | 1032 | twf-RA | 45..141 | 1003..907 | 460 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twf-RA | 1377 | CG3172-RA | 103..1090 | 1003..17 | 4900 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14122974..14123750 | 945..170 | 3835 | 99.9 | Minus |
3R | 32079331 | 3R | 14124033..14124187 | 171..17 | 775 | 100 | Minus |
3R | 32079331 | 3R | 14122815..14122873 | 1003..945 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:30:39 has no hits.
BS09923.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:53 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-PA | 45..1032 | 17..1003 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:47 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3172-PA | 45..1032 | 17..1003 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:24 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 103..1090 | 17..1003 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:55 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 103..1090 | 17..1003 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:55 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124035..14124187 | 17..169 | 100 | -> | Minus |
3R | 14122815..14122873 | 945..1003 | 98 | -> | Minus |
3R | 14122975..14123750 | 170..944 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:24 Download gff for
BS09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9948537..9948595 | 945..1003 | 98 | -> | Minus |
arm_3R | 9948697..9949472 | 170..944 | 99 | -> | Minus |
arm_3R | 9949757..9949909 | 17..169 | 100 | -> | Minus |
BS09923.5prime Sequence
864 bp (830 high quality bases) assembled on 2006-04-19
> BS09923.5prime
GAAGTTATCAGTCGACATGTCTCACCAAACGGGTATCCGAGCCAACGAGC
AGCTGGCCAAGGTGTTCGGCAAAGCGAAGAATGGTAAATTTCGCGTGATA
AAAGTTTCGATCGAGAATGAGCAGCTTAGTTGCGGCGCCACGGCGGAGAC
GAAAAAGGATTGGGAGCGCGACTACGACAAGCTTATAGGTCCCCTACTGG
AAAAGGATGTGCCCTGCTATATTCTCTATCGCCTGGACGCCAAGATCCCG
CTGGGCTACAGTTGGCTACTTATCAGCTGGACGCCGGACACGGCCAGCAT
CCGACAGAAGATGGTATACGCTTCCACGAAGGCCACGTTGAAAACGGAGT
TCGGATCAGCATACATCACAGAGGAGCTGCATGCCACCACTCTGGATGAG
TGCACGCTGGAGGGCTATCGCCGGCACAAGCAGGATTTCGCAGCCCCAGC
TCCATTGACCAGCAGGGAGGAGGAGCTGAAAGAGCTGCGAAAGACAGAGG
TTCACACTGAGATCAATACGAATACGCGGCACCAAACTCTGGGTGGGATC
AATTGCCCGCTGAGCGAGGCAACCGTGGCTGCCGTTCAGGATTTGGTGCG
CGGCAAGCACGACTACCTTCAGTTCCGCATCGATCTGGAGGAGGAACAGA
TCCATGTTTCGCGTGCGGCCAAAGTGGAGCTCGCCGATCTGCCGAAGCAA
GTGCCCGAGGATCATGCACGATACCACCTCTTCCTGTTTCGGCACACGCA
CGAGGGCGACTACTTTGAGTCGTACGTGTTCGTCTACTCCATGCCTGGAT
ATTCCTGCTCCGTGCGCGAGCGCATGATGTACTNCAGCTGTAAGGCTCCT
TTTCTCGACGAGCT
BS09923.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3172-PA | 1032 | twf-RA | 1..848 | 17..864 | 4196 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twf-RA | 1377 | CG3172-RA | 59..906 | 17..864 | 4214 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14122974..14123719 | 119..864 | 3704 | 99.7 | Plus |
3R | 32079331 | 3R | 14122794..14122873 | 40..119 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:03:49 has no hits.
BS09923.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:54 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:49 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3172-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:49 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 53..906 | 11..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:56 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 53..906 | 11..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:56 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14122706..14122736 | 11..41 | 93 | -> | Plus |
3R | 14122796..14122873 | 42..119 | 100 | -> | Plus |
3R | 14122975..14123719 | 120..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:49 Download gff for
BS09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9948428..9948458 | 11..41 | 93 | -> | Plus |
arm_3R | 9948518..9948595 | 42..119 | 100 | -> | Plus |
arm_3R | 9948697..9949441 | 120..864 | 99 | | Plus |
BS09923.complete Sequence
1064 bp (1064 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636507
> BS09923.complete
GAAGTTATCAGTCGACATGTCTCACCAAACGGGTATCCGAGCCAACGAGC
AGCTGGCCAAGGTGTTCGGCAAAGCGAAGAATGGTAAATTTCGCGTGATA
AAAGTTTCGATCGAGAATGAGCAGCTTAGTTGCGGCGCCACGGCGGAGAC
GAAAAAGGATTGGGAGCGCGACTACGACAAGCTTATAGGTCCCCTACTGG
AAAAGGATGTGCCCTGCTATATTCTCTATCGCCTGGACGCCAAGATCCCG
CTGGGCTACAGTTGGCTACTTATCAGCTGGACGCCGGACACGGCCAGCAT
CCGACAGAAGATGGTATACGCTTCCACGAAGGCCACGTTGAAAACGGAGT
TCGGATCAGCATACATCACAGAGGAGCTGCATGCCACCACTCTGGATGAG
TGCACGCTGGAGGGCTATCGCCGGCACAAGCAGGATTTCGCAGCCCCAGC
TCCATTGACCAGCAGGGAGGAGGAGCTGAAAGAGCTGCGAAAGACAGAGG
TTCACACTGAGATCAATACGAATACGCGGCACCAAACTCTGGGTGGGATC
AATTGCCCGCTGAGCGAGGCAACCGTGGCTGCCGTTCAGGATTTGGTGCG
CGGCAAGCACGACTACCTTCAGTTCCGCATCGATCTGGAGGAGGAACAGA
TCCATGTTTCGCGTGCGGCCAAAGTGGAGCTCGCCGATCTGCCGAAGCAA
GTGCCCGAGGATCATGCACGATACCACCTCTTCCTGTTTCGGCACACGCA
CGAGGGCGACTACTTTGAGTCGTACGTGTTCGTCTACTCCATGCCTGGAT
ATTCCTGCTCCGTGCGCGAGCGCATGATGTACTCAAGCTGTAAGGCTCCT
TTTCTCGACGAGCTCGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGCTTGA
AATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCTTGCAGGACGAGCTGC
ACCCAAAGAAGATTCTACACCGACCGGCTTTTGCCAAGCCCAAGGGGCCA
CCAAACCGAGGCGCCAAGCGCCTCACGCGTCCCACCGCAGAGGACTAAAA
GCTTTCTAGACCAT
BS09923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twf-RA | 1032 | CG3172-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twf-RA | 1377 | CG3172-RA | 59..1090 | 17..1048 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14122974..14123750 | 119..895 | 3885 | 100 | Plus |
3R | 32079331 | 3R | 14124033..14124187 | 894..1048 | 775 | 100 | Plus |
3R | 32079331 | 3R | 14122794..14122873 | 40..119 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:02 has no hits.
BS09923.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:58 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:50 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 49..1086 | 11..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:51 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 59..1088 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:59 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 49..1086 | 11..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:43 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twf-RA | 59..1088 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:43 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14122712..14122736 | 17..41 | 100 | -> | Plus |
3R | 14122796..14122873 | 42..119 | 100 | -> | Plus |
3R | 14122975..14123750 | 120..895 | 100 | -> | Plus |
3R | 14124035..14124185 | 896..1046 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:51 Download gff for
BS09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9948434..9948458 | 17..41 | 100 | -> | Plus |
arm_3R | 9948518..9948595 | 42..119 | 100 | -> | Plus |
arm_3R | 9948697..9949472 | 120..895 | 100 | -> | Plus |
arm_3R | 9949757..9949907 | 896..1046 | 100 | | Plus |
BS09923.pep Sequence
Translation from 16 to 1047
> BS09923.pep
MSHQTGIRANEQLAKVFGKAKNGKFRVIKVSIENEQLSCGATAETKKDWE
RDYDKLIGPLLEKDVPCYILYRLDAKIPLGYSWLLISWTPDTASIRQKMV
YASTKATLKTEFGSAYITEELHATTLDECTLEGYRRHKQDFAAPAPLTSR
EEELKELRKTEVHTEINTNTRHQTLGGINCPLSEATVAAVQDLVRGKHDY
LQFRIDLEEEQIHVSRAAKVELADLPKQVPEDHARYHLFLFRHTHEGDYF
ESYVFVYSMPGYSCSVRERMMYSSCKAPFLDELAALGVEVVKKLEIDSGS
ELTEAFLQDELHPKKILHRPAFAKPKGPPNRGAKRLTRPTAED*
BS09923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twf-PA | 343 | CG3172-PA | 1..343 | 1..343 | 1796 | 100 | Plus |