Clone BS09923 Report

Search the DGRC for BS09923

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:23
Vector:pDNR-Dual
Associated Gene/Transcripttwf-RA
Protein status:BS09923.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09923.3prime Sequence

1003 bp (807 high quality bases) assembled on 2006-04-19

> BS09923.3prime
ATGGTCTAGAAAGCTTTTAGTCCTCTGCGGTGGGACGCGTGAGGCGCTTG
GCGCCTCGGTTTGGTGGCCCCTTGGGCTTGGCAAAAGCCGGTCGGTGTAG
AATCTTCTTTGGGTGCAGCTCGTCCTGCAAGAAGGCTTCGGTCAGCTCGC
TGCCGCTGTCGATTTCAAGCTTCTTAACAACCTCCACGCCAAGGGCCGCG
AGCTCGTCGAGAAAAGGAGCCTTACAGCTTGAGTACATCATGCGCTCGCG
CACGGAGCAGGAATATCCAGGCATGGAGTAGACGAACACGTACGACTCAA
AGTAGTCGCCCTCGTGCGTGTGCCGAAACAGGAAGAGGTGGTATCGTGCA
TGATCCTCGGGCACTTGCTTCGGCAGATCGGCGAGCTCCACTTTGGCCGC
ACGCGAAACATGGATCTGTTCCTCCTCCAGATCGATGCGGAACTGAAGGT
AGTCGTGCTTGCCGCGCACCAAATCCTGAACGGCAGCCACGGTTGCCTCG
CTCAGCGGGCAATTGATCCCACCCAGAGTTTGGTGCCGCGTATTCGTATT
GATCTCAGTGTGAACCTCTGTCTTTCGCAGCTCTTTCAGCTCCTCCTCCC
TGCTGGTCAATGGAGCTGGGGCTGCGAAATCCTGCTTGTGCCGGCGATAG
CCCTCCAGCGTGCACTCATCCAGAGTGGTGGCATGCAGCTCCTCTGTGAT
GTATGCTGATCCGAACTCCGTTTTCAACGTGGCCTTCGTGGAAGCGTATA
CCATCTTCTGTCGGATGCTGGCCGTGTCCGGCGTCCAGCTGATAAGTAGC
CAACTGTAGCCCAGCGGGATCTTGGCGTCCAGGCGATAGAGAATATAGCA
GGGCACATCCTTTTCCAGTAGGGGACCTATAAGCTTGTCGTAGTCGCGCT
CCCAATCTTTTTCGTCTCCGCCGTGGCGCCGCAACTAAGCTGCTCATTCT
CGATCGAAACTTTTATCACGCGAAATTTACCATTCTTCCCTTTGCCGAAC
ACC

BS09923.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3172-PA 1032 twf-RA 142..1032 907..17 4455 100 Minus
CG3172-PA 1032 twf-RA 45..141 1003..907 460 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
twf-RA 1377 CG3172-RA 103..1090 1003..17 4900 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14122974..14123750 945..170 3835 99.9 Minus
3R 32079331 3R 14124033..14124187 171..17 775 100 Minus
3R 32079331 3R 14122815..14122873 1003..945 280 98.3 Minus
Blast to na_te.dros performed on 2015-01-30 17:30:39 has no hits.

BS09923.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:53 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
twf-PA 45..1032 17..1003 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:47 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3172-PA 45..1032 17..1003 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:24 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
twf-RA 103..1090 17..1003 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:55 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
twf-RA 103..1090 17..1003 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:55 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14124035..14124187 17..169 100 -> Minus
3R 14122815..14122873 945..1003 98 -> Minus
3R 14122975..14123750 170..944 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:24 Download gff for BS09923.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9948537..9948595 945..1003 98 -> Minus
arm_3R 9948697..9949472 170..944 99 -> Minus
arm_3R 9949757..9949909 17..169 100 -> Minus

BS09923.5prime Sequence

864 bp (830 high quality bases) assembled on 2006-04-19

> BS09923.5prime
GAAGTTATCAGTCGACATGTCTCACCAAACGGGTATCCGAGCCAACGAGC
AGCTGGCCAAGGTGTTCGGCAAAGCGAAGAATGGTAAATTTCGCGTGATA
AAAGTTTCGATCGAGAATGAGCAGCTTAGTTGCGGCGCCACGGCGGAGAC
GAAAAAGGATTGGGAGCGCGACTACGACAAGCTTATAGGTCCCCTACTGG
AAAAGGATGTGCCCTGCTATATTCTCTATCGCCTGGACGCCAAGATCCCG
CTGGGCTACAGTTGGCTACTTATCAGCTGGACGCCGGACACGGCCAGCAT
CCGACAGAAGATGGTATACGCTTCCACGAAGGCCACGTTGAAAACGGAGT
TCGGATCAGCATACATCACAGAGGAGCTGCATGCCACCACTCTGGATGAG
TGCACGCTGGAGGGCTATCGCCGGCACAAGCAGGATTTCGCAGCCCCAGC
TCCATTGACCAGCAGGGAGGAGGAGCTGAAAGAGCTGCGAAAGACAGAGG
TTCACACTGAGATCAATACGAATACGCGGCACCAAACTCTGGGTGGGATC
AATTGCCCGCTGAGCGAGGCAACCGTGGCTGCCGTTCAGGATTTGGTGCG
CGGCAAGCACGACTACCTTCAGTTCCGCATCGATCTGGAGGAGGAACAGA
TCCATGTTTCGCGTGCGGCCAAAGTGGAGCTCGCCGATCTGCCGAAGCAA
GTGCCCGAGGATCATGCACGATACCACCTCTTCCTGTTTCGGCACACGCA
CGAGGGCGACTACTTTGAGTCGTACGTGTTCGTCTACTCCATGCCTGGAT
ATTCCTGCTCCGTGCGCGAGCGCATGATGTACTNCAGCTGTAAGGCTCCT
TTTCTCGACGAGCT

BS09923.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3172-PA 1032 twf-RA 1..848 17..864 4196 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
twf-RA 1377 CG3172-RA 59..906 17..864 4214 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14122974..14123719 119..864 3704 99.7 Plus
3R 32079331 3R 14122794..14122873 40..119 400 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:03:49 has no hits.

BS09923.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:54 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
twf-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:49 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3172-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:49 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
twf-RA 53..906 11..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:56 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
twf-RA 53..906 11..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:56 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14122706..14122736 11..41 93 -> Plus
3R 14122796..14122873 42..119 100 -> Plus
3R 14122975..14123719 120..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:49 Download gff for BS09923.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9948428..9948458 11..41 93 -> Plus
arm_3R 9948518..9948595 42..119 100 -> Plus
arm_3R 9948697..9949441 120..864 99   Plus

BS09923.complete Sequence

1064 bp (1064 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636507

> BS09923.complete
GAAGTTATCAGTCGACATGTCTCACCAAACGGGTATCCGAGCCAACGAGC
AGCTGGCCAAGGTGTTCGGCAAAGCGAAGAATGGTAAATTTCGCGTGATA
AAAGTTTCGATCGAGAATGAGCAGCTTAGTTGCGGCGCCACGGCGGAGAC
GAAAAAGGATTGGGAGCGCGACTACGACAAGCTTATAGGTCCCCTACTGG
AAAAGGATGTGCCCTGCTATATTCTCTATCGCCTGGACGCCAAGATCCCG
CTGGGCTACAGTTGGCTACTTATCAGCTGGACGCCGGACACGGCCAGCAT
CCGACAGAAGATGGTATACGCTTCCACGAAGGCCACGTTGAAAACGGAGT
TCGGATCAGCATACATCACAGAGGAGCTGCATGCCACCACTCTGGATGAG
TGCACGCTGGAGGGCTATCGCCGGCACAAGCAGGATTTCGCAGCCCCAGC
TCCATTGACCAGCAGGGAGGAGGAGCTGAAAGAGCTGCGAAAGACAGAGG
TTCACACTGAGATCAATACGAATACGCGGCACCAAACTCTGGGTGGGATC
AATTGCCCGCTGAGCGAGGCAACCGTGGCTGCCGTTCAGGATTTGGTGCG
CGGCAAGCACGACTACCTTCAGTTCCGCATCGATCTGGAGGAGGAACAGA
TCCATGTTTCGCGTGCGGCCAAAGTGGAGCTCGCCGATCTGCCGAAGCAA
GTGCCCGAGGATCATGCACGATACCACCTCTTCCTGTTTCGGCACACGCA
CGAGGGCGACTACTTTGAGTCGTACGTGTTCGTCTACTCCATGCCTGGAT
ATTCCTGCTCCGTGCGCGAGCGCATGATGTACTCAAGCTGTAAGGCTCCT
TTTCTCGACGAGCTCGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGCTTGA
AATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCTTGCAGGACGAGCTGC
ACCCAAAGAAGATTCTACACCGACCGGCTTTTGCCAAGCCCAAGGGGCCA
CCAAACCGAGGCGCCAAGCGCCTCACGCGTCCCACCGCAGAGGACTAAAA
GCTTTCTAGACCAT

BS09923.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
twf-RA 1032 CG3172-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
twf-RA 1377 CG3172-RA 59..1090 17..1048 5160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14122974..14123750 119..895 3885 100 Plus
3R 32079331 3R 14124033..14124187 894..1048 775 100 Plus
3R 32079331 3R 14122794..14122873 40..119 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:43:02 has no hits.

BS09923.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:58 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
twf-RA 1..1032 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:50 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
twf-RA 49..1086 11..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:51 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
twf-RA 59..1088 17..1046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:59 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
twf-RA 49..1086 11..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:43 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
twf-RA 59..1088 17..1046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:43 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14122712..14122736 17..41 100 -> Plus
3R 14122796..14122873 42..119 100 -> Plus
3R 14122975..14123750 120..895 100 -> Plus
3R 14124035..14124185 896..1046 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:51 Download gff for BS09923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9948434..9948458 17..41 100 -> Plus
arm_3R 9948518..9948595 42..119 100 -> Plus
arm_3R 9948697..9949472 120..895 100 -> Plus
arm_3R 9949757..9949907 896..1046 100   Plus

BS09923.pep Sequence

Translation from 16 to 1047

> BS09923.pep
MSHQTGIRANEQLAKVFGKAKNGKFRVIKVSIENEQLSCGATAETKKDWE
RDYDKLIGPLLEKDVPCYILYRLDAKIPLGYSWLLISWTPDTASIRQKMV
YASTKATLKTEFGSAYITEELHATTLDECTLEGYRRHKQDFAAPAPLTSR
EEELKELRKTEVHTEINTNTRHQTLGGINCPLSEATVAAVQDLVRGKHDY
LQFRIDLEEEQIHVSRAAKVELADLPKQVPEDHARYHLFLFRHTHEGDYF
ESYVFVYSMPGYSCSVRERMMYSSCKAPFLDELAALGVEVVKKLEIDSGS
ELTEAFLQDELHPKKILHRPAFAKPKGPPNRGAKRLTRPTAED*

BS09923.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
twf-PA 343 CG3172-PA 1..343 1..343 1796 100 Plus