Clone BS09924 Report

Search the DGRC for BS09924

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptyps-RA
Protein status:BS09924.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09924.3prime Sequence

895 bp (851 high quality bases) assembled on 2006-04-19

> BS09924.3prime
ATGGTCTAGAAAGCTTCTATGCAGTGCTCTCTGTGGTTGTATTTTGCAGC
TCTTGAGCGCCGTTCTTCTCTGGCTGCTGCTCCGAACCACCGCCAGGGCC
ATTTGGTTTCCTCTGGCGACGTGGACGTGGCTGTTGTGGGCGTGGCGGTC
CCTGGCCTTGAATGTATTCTCCGCCGTCGCGGCGTGGTGGCGGTGGACCA
TTGTTGAAGTTGCGTCGGAAGAAGCGCCTCTGGGGTCCGCCCGGTGGGCC
TCCACCGCGACGTGGTCCCTGACCCTCGCCGCGCTGCAGACCCTCGGGAT
TCTGATCGTGGACACCGGGCTCGGCGCTGCCGTCACCGCCGCCCAGGCCG
CGTCTCGGCTGACGCAGATAATAGTTGTTGTAGCGCCGGGGGCCACCGGG
AGCTCCACCAGGCGGTCCTCGGGGGCCACCTCGAGGTCCTCCGGGCGGTC
CACCGGGTGGTCCTCGGCGGAAGTTCTGTCGTGGTTGACGCGGGCCGGAC
TGCACCTGCTGCTGCGGCTGCCCGTCAACGATTGGTGCCGCCTGCTGCTG
TTGCTGCTGGGCCGACGATTCGGCGTCTTCGCCTTCCACTTCGCCATCCT
TGCGGCGATTCTTCTTCATCCAGGGACGGAAGTTACGGCGCTTGTCCGCT
GCAAACTGACTGCCCCGCACCGGCTCACCGGAGGGACCGGTCACGTTGGC
CGCCTCGTTGCCCTTCTCACCAATGACCACGTCGAACTCAACGACCTCAC
CGTCGCCCACCGAGCGGACCGCCTTTTTGGGGTTGTTCCGCGCAATGGCG
CTCTGGTGCACAAAGACATCCTCTCTGGTGTCGTTGCGGTTGATGAAGCC
GTAGCCGCTCTTCACGTTGAACCACTTGACGGTGCCGGTGACTTT

BS09924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5654-PA 1059 yps-RA 181..1059 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
yps-RA 1750 CG5654-RA 445..1325 895..15 4405 100 Minus
yps-RB 2677 CG5654-RB 445..1275 895..65 4155 100 Minus
yps-RB 2677 CG5654-RB 1795..1846 66..15 260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12122837..12123569 163..895 3665 100 Plus
3L 28110227 3L 12122676..12122773 65..162 490 100 Plus
3L 28110227 3L 12122105..12122156 15..66 260 100 Plus
Blast to na_te.dros performed 2015-02-12 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2929..2966 862..825 109 76.3 Minus

BS09924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:55 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
yps-PA 181..1059 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:50 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5654-PA 181..1059 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:45 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
yps-RA 445..1325 15..895 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:07 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
yps-RA 445..1325 15..895 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:07 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12122105..12122154 15..64 100 <- Plus
3L 12122676..12122773 65..162 100 <- Plus
3L 12122837..12123569 163..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:45 Download gff for BS09924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12115205..12115254 15..64 100 <- Plus
arm_3L 12115776..12115873 65..162 100 <- Plus
arm_3L 12115937..12116669 163..895 100   Plus

BS09924.5prime Sequence

890 bp (744 high quality bases) assembled on 2006-04-19

> BS09924.5prime
GAAGTTATCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCG
CCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCG
AATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGG
ACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAG
TCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATC
AACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGC
GCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCG
TTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTG
ACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAA
GCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGATGGCG
AAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAG
GCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCC
GCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCGCCCG
GAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGGTGGC
CCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCCTGGG
CGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCCGAGG
GTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCCACCG
GCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCACCAT

BS09924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5654-PA 1059 yps-RA 1..835 17..851 4175 100 Plus
CG5654-PA 1059 yps-RA 835..871 850..886 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
yps-RB 2677 CG5654-RB 265..1135 17..886 4330 99.9 Plus
yps-RA 1750 CG5654-RA 265..1135 17..886 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12122879..12123575 886..191 3435 99.9 Minus
3L 28110227 3L 12124712..12124886 191..17 875 100 Minus
Blast to na_te.dros performed 2015-02-12 20:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2761..2966 57..267 225 58 Plus

BS09924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:56 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
yps-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:51 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5654-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:54 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
yps-RA 259..1138 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:24 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
yps-RA 259..1138 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:24 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12122874..12123574 192..890 99 <- Minus
3L 12124712..12124891 15..191 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:54 Download gff for BS09924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12115974..12116674 192..890 99 <- Minus
arm_3L 12117812..12117991 15..191 98 -> Minus

BS09924.complete Sequence

1091 bp (1091 high quality bases) assembled on 2006-03-25

> BS09924.complete
GAAGTTATCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCG
CCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCG
AATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGG
ACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAG
TCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATC
AACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGC
GCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCG
TTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTG
ACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAA
GCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGATGGCG
AAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAG
GCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCC
GCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCGCCCG
GAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGGTGGC
CCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCCTGGG
CGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCCGAGG
GTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCCACCG
GGCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCAACAATGGTCCACC
GCCACCACGCCGCGACGGCGGAGAATACATTCAAGGCCAGGGACCGCCAC
GCCCACAACAGCCACGTCCACGTCGCCAGAGGAAACCAAATGGCCCTGGC
GGTGGTTCGGAGCAGCAGCCAGAGAAGAACGGCGCTCAAGAGCTGCAAAA
TACAACCACAGAGAGCACTGCATAGAAGCTTTCTAGACCAT

BS09924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
yps-RA 1059 CG5654-PA 1..1059 17..1075 5295 100 Plus
yps-RB 1023 CG5654-PB 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
yps-RA 1750 CG5654-RA 265..1325 17..1077 5305 100 Plus
yps-RB 2677 CG5654-RB 265..1275 17..1027 5055 100 Plus
yps-RB 2677 CG5654-RB 1795..1846 1026..1077 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12122837..12123575 929..191 3695 100 Minus
3L 28110227 3L 12124712..12124886 191..17 875 100 Minus
3L 28110227 3L 12122676..12122773 1027..930 490 100 Minus
3L 28110227 3L 12122105..12122156 1077..1026 260 100 Minus
Blast to na_te.dros performed 2014-11-28 04:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2761..2966 57..267 225 58 Plus

BS09924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:00 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:40 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 220..1278 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:52 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 265..1323 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:00 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 214..1280 9..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:10 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 265..1323 17..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:10 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12122107..12122154 1028..1075 100 <- Minus
3L 12122676..12122773 930..1027 100 <- Minus
3L 12122837..12123574 192..929 100 <- Minus
3L 12124712..12124886 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:52 Download gff for BS09924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12115207..12115254 1028..1075 100 <- Minus
arm_3L 12115776..12115873 930..1027 100 <- Minus
arm_3L 12115937..12116674 192..929 100 <- Minus
arm_3L 12117812..12117986 17..191 100   Minus

BS09924.pep Sequence

Translation from 16 to 1074

> BS09924.pep
MADAAESKPLAAEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQP
APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPK
KAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRNFR
PWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ
NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQPRRGLGGGDGS
AEPGVHDQNPEGLQRGEGQGPRRGGGPPGGPQRRFFRRNFNNGPPPPRRD
GGEYIQGQGPPRPQQPRPRRQRKPNGPGGGSEQQPEKNGAQELQNTTTES
TA*

BS09924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
yps-PA 352 CG5654-PA 1..352 1..352 1915 100 Plus
yps-PB 340 CG5654-PB 1..337 1..337 1841 100 Plus
AGO2-PB 1214 CG7439-PB 15..321 2..335 178 24 Plus
AGO2-PC 1217 CG7439-PC 18..324 2..335 178 24 Plus
CG10555-PB 926 CG10555-PB 291..594 14..327 164 26.1 Plus