Clone Sequence Records
BS09924.3prime Sequence
895 bp (851 high quality bases) assembled on 2006-04-19
> BS09924.3prime
ATGGTCTAGAAAGCTTCTATGCAGTGCTCTCTGTGGTTGTATTTTGCAGC
TCTTGAGCGCCGTTCTTCTCTGGCTGCTGCTCCGAACCACCGCCAGGGCC
ATTTGGTTTCCTCTGGCGACGTGGACGTGGCTGTTGTGGGCGTGGCGGTC
CCTGGCCTTGAATGTATTCTCCGCCGTCGCGGCGTGGTGGCGGTGGACCA
TTGTTGAAGTTGCGTCGGAAGAAGCGCCTCTGGGGTCCGCCCGGTGGGCC
TCCACCGCGACGTGGTCCCTGACCCTCGCCGCGCTGCAGACCCTCGGGAT
TCTGATCGTGGACACCGGGCTCGGCGCTGCCGTCACCGCCGCCCAGGCCG
CGTCTCGGCTGACGCAGATAATAGTTGTTGTAGCGCCGGGGGCCACCGGG
AGCTCCACCAGGCGGTCCTCGGGGGCCACCTCGAGGTCCTCCGGGCGGTC
CACCGGGTGGTCCTCGGCGGAAGTTCTGTCGTGGTTGACGCGGGCCGGAC
TGCACCTGCTGCTGCGGCTGCCCGTCAACGATTGGTGCCGCCTGCTGCTG
TTGCTGCTGGGCCGACGATTCGGCGTCTTCGCCTTCCACTTCGCCATCCT
TGCGGCGATTCTTCTTCATCCAGGGACGGAAGTTACGGCGCTTGTCCGCT
GCAAACTGACTGCCCCGCACCGGCTCACCGGAGGGACCGGTCACGTTGGC
CGCCTCGTTGCCCTTCTCACCAATGACCACGTCGAACTCAACGACCTCAC
CGTCGCCCACCGAGCGGACCGCCTTTTTGGGGTTGTTCCGCGCAATGGCG
CTCTGGTGCACAAAGACATCCTCTCTGGTGTCGTTGCGGTTGATGAAGCC
GTAGCCGCTCTTCACGTTGAACCACTTGACGGTGCCGGTGACTTT
BS09924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5654-PA | 1059 | yps-RA | 181..1059 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yps-RA | 1750 | CG5654-RA | 445..1325 | 895..15 | 4405 | 100 | Minus |
yps-RB | 2677 | CG5654-RB | 445..1275 | 895..65 | 4155 | 100 | Minus |
yps-RB | 2677 | CG5654-RB | 1795..1846 | 66..15 | 260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12122837..12123569 | 163..895 | 3665 | 100 | Plus |
3L | 28110227 | 3L | 12122676..12122773 | 65..162 | 490 | 100 | Plus |
3L | 28110227 | 3L | 12122105..12122156 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 18:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2929..2966 | 862..825 | 109 | 76.3 | Minus |
BS09924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:55 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-PA | 181..1059 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:50 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5654-PA | 181..1059 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:45 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 445..1325 | 15..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:07 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 445..1325 | 15..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:07 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12122105..12122154 | 15..64 | 100 | <- | Plus |
3L | 12122676..12122773 | 65..162 | 100 | <- | Plus |
3L | 12122837..12123569 | 163..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:45 Download gff for
BS09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12115205..12115254 | 15..64 | 100 | <- | Plus |
arm_3L | 12115776..12115873 | 65..162 | 100 | <- | Plus |
arm_3L | 12115937..12116669 | 163..895 | 100 | | Plus |
BS09924.5prime Sequence
890 bp (744 high quality bases) assembled on 2006-04-19
> BS09924.5prime
GAAGTTATCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCG
CCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCG
AATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGG
ACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAG
TCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATC
AACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGC
GCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCG
TTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTG
ACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAA
GCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGATGGCG
AAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAG
GCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCC
GCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCGCCCG
GAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGGTGGC
CCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCCTGGG
CGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCCGAGG
GTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCCACCG
GCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCACCAT
BS09924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5654-PA | 1059 | yps-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
CG5654-PA | 1059 | yps-RA | 835..871 | 850..886 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yps-RB | 2677 | CG5654-RB | 265..1135 | 17..886 | 4330 | 99.9 | Plus |
yps-RA | 1750 | CG5654-RA | 265..1135 | 17..886 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12122879..12123575 | 886..191 | 3435 | 99.9 | Minus |
3L | 28110227 | 3L | 12124712..12124886 | 191..17 | 875 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2966 | 57..267 | 225 | 58 | Plus |
BS09924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:23:56 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:38:51 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5654-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:54 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 259..1138 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:24 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 259..1138 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:24 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12122874..12123574 | 192..890 | 99 | <- | Minus |
3L | 12124712..12124891 | 15..191 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:54 Download gff for
BS09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12115974..12116674 | 192..890 | 99 | <- | Minus |
arm_3L | 12117812..12117991 | 15..191 | 98 | -> | Minus |
BS09924.complete Sequence
1091 bp (1091 high quality bases) assembled on 2006-03-25
> BS09924.complete
GAAGTTATCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCG
CCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCG
AATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGG
ACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAG
TCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATC
AACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGC
GCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCG
TTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTG
ACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAA
GCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGATGGCG
AAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAG
GCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCC
GCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCGCCCG
GAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGGTGGC
CCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCCTGGG
CGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCCGAGG
GTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCCACCG
GGCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCAACAATGGTCCACC
GCCACCACGCCGCGACGGCGGAGAATACATTCAAGGCCAGGGACCGCCAC
GCCCACAACAGCCACGTCCACGTCGCCAGAGGAAACCAAATGGCCCTGGC
GGTGGTTCGGAGCAGCAGCCAGAGAAGAACGGCGCTCAAGAGCTGCAAAA
TACAACCACAGAGAGCACTGCATAGAAGCTTTCTAGACCAT
BS09924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yps-RA | 1059 | CG5654-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
yps-RB | 1023 | CG5654-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yps-RA | 1750 | CG5654-RA | 265..1325 | 17..1077 | 5305 | 100 | Plus |
yps-RB | 2677 | CG5654-RB | 265..1275 | 17..1027 | 5055 | 100 | Plus |
yps-RB | 2677 | CG5654-RB | 1795..1846 | 1026..1077 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12122837..12123575 | 929..191 | 3695 | 100 | Minus |
3L | 28110227 | 3L | 12124712..12124886 | 191..17 | 875 | 100 | Minus |
3L | 28110227 | 3L | 12122676..12122773 | 1027..930 | 490 | 100 | Minus |
3L | 28110227 | 3L | 12122105..12122156 | 1077..1026 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2966 | 57..267 | 225 | 58 | Plus |
BS09924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:00 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:40 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 220..1278 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:52 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 265..1323 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:00 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 214..1280 | 9..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:10 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yps-RA | 265..1323 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:10 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12122107..12122154 | 1028..1075 | 100 | <- | Minus |
3L | 12122676..12122773 | 930..1027 | 100 | <- | Minus |
3L | 12122837..12123574 | 192..929 | 100 | <- | Minus |
3L | 12124712..12124886 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:52 Download gff for
BS09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12115207..12115254 | 1028..1075 | 100 | <- | Minus |
arm_3L | 12115776..12115873 | 930..1027 | 100 | <- | Minus |
arm_3L | 12115937..12116674 | 192..929 | 100 | <- | Minus |
arm_3L | 12117812..12117986 | 17..191 | 100 | | Minus |
BS09924.pep Sequence
Translation from 16 to 1074
> BS09924.pep
MADAAESKPLAAEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQP
APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPK
KAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRNFR
PWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ
NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQPRRGLGGGDGS
AEPGVHDQNPEGLQRGEGQGPRRGGGPPGGPQRRFFRRNFNNGPPPPRRD
GGEYIQGQGPPRPQQPRPRRQRKPNGPGGGSEQQPEKNGAQELQNTTTES
TA*
BS09924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yps-PA | 352 | CG5654-PA | 1..352 | 1..352 | 1915 | 100 | Plus |
yps-PB | 340 | CG5654-PB | 1..337 | 1..337 | 1841 | 100 | Plus |
AGO2-PB | 1214 | CG7439-PB | 15..321 | 2..335 | 178 | 24 | Plus |
AGO2-PC | 1217 | CG7439-PC | 18..324 | 2..335 | 178 | 24 | Plus |
CG10555-PB | 926 | CG10555-PB | 291..594 | 14..327 | 164 | 26.1 | Plus |