Clone Sequence Records
BS09928.3prime Sequence
977 bp (870 high quality bases) assembled on 2006-04-19
> BS09928.3prime
ATGGTCTAGAAAGCTTTCAGGTGCCCAGGAGCATCTCGCGCTGCGGAGTG
TTCTGCAGCATGTTGGCGGTCCTCAGGTGAATGTTGTTGTCCTCCAGCGA
CATCGTTTCCGAGGAGCCGTGCGAGGCAACTGAAGTACCTGCAAGCGAAC
TTCGTATTGAGTGCGAATCCTCGGGAACGGTAAGCGTAACCGTTGCGCAC
TCCGAAGTCTCGTAGGACACTGTGGACTGAACGTCGATCGCGTTTTGTTC
TTGTCTTGATATCACATCTGTTATGACTTGCTTCTCCGCGTCTGTATAAT
CATTGCGTCTGCGCCCGATCTTCTTCTCCATATCCGCCTCCACGAAGTCA
CCTAGTTTGCGGGTGGGGAACTCGTTTGACTTGGCTGGCGGCGGCACATC
CAACTTGAGGTCCTTCAGCTTCTTCATCACGCGTTCCAGAGCCTGAATGG
CATCATCGTCGCTGTAGCCAAAGTTCTTGTGCAGCCGTACTTGCAAGTAC
TCAATGATGGCGTCCATGTCCTTCAGGCGCAATAGTTCGTCTTTGTGAAG
GTACAGAATGGTGATGGCCATGGACAGTATGACGCGATCGCCGTCTAACA
TGAATATATCCCACACGCGCAGACTCAAACTAAAAGGAACGCGTTCCACG
AAGACGACAAAGAACCACTTAATAGCGTACAGCAGGGCGTCAACGTTGTG
TTTGGTAAAGTGCTTGTGTAGTTTTCGCATTATTTTCGACATGATGCGGT
CGTGGTGATCGATGAATCGCGTCAGCTTCGGGAATCCCTCGATAAACAGC
CCGTGCATGCCGTATTTTTGGTCTGTTATCAGGGTATTTAATGCCCAAAA
AGCCTCCTCCTCGTGCAATAAAGCACAGCACGCCCAGCACACAGGCCATG
CCCTGGCAGTAGCCCAGCTCCGAGTTGTAGATGCTATAGGCGTTGAGCAC
ATTGAATAGCGAGCACTGCTTTACGCT
BS09928.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8085-PC | 1458 | RN-tre-RC | 607..1458 | 868..17 | 4260 | 100 | Minus |
| CG8085-PB | 1374 | RN-tre-RB | 607..1285 | 868..190 | 3395 | 100 | Minus |
| CG8085-PA | 1716 | RN-tre-RA | 607..1285 | 868..190 | 3395 | 100 | Minus |
| CG8085-PC | 1458 | RN-tre-RC | 496..585 | 977..888 | 450 | 100 | Minus |
| CG8085-PB | 1374 | RN-tre-RB | 496..585 | 977..888 | 450 | 100 | Minus |
| CG8085-PA | 1716 | RN-tre-RA | 496..585 | 977..888 | 450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RN-tre-RF | 2715 | CG8085-RF | 788..1750 | 977..17 | 4720 | 99.6 | Minus |
| RN-tre-RC | 2715 | CG8085-RC | 788..1750 | 977..17 | 4720 | 99.6 | Minus |
| RN-tre-RE | 2529 | CG8085-RE | 653..1446 | 977..186 | 3860 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13988498..13988883 | 255..640 | 1930 | 100 | Plus |
| 2R | 25286936 | 2R | 13988941..13989281 | 639..977 | 1560 | 98.5 | Plus |
| 2R | 25286936 | 2R | 13985990..13986096 | 84..190 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 13985780..13985846 | 17..83 | 335 | 100 | Plus |
| 2R | 25286936 | 2R | 13988373..13988439 | 190..256 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:30:26 has no hits.
BS09928.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:04 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8085-PC | 496..1458 | 17..977 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:02 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8085-PC | 496..1458 | 17..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:22 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 788..1750 | 17..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:53 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 788..1750 | 17..977 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:53 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13985780..13985846 | 17..83 | 100 | <- | Plus |
| 2R | 13985990..13986095 | 84..189 | 100 | <- | Plus |
| 2R | 13988373..13988437 | 190..254 | 100 | <- | Plus |
| 2R | 13988498..13988883 | 255..640 | 100 | <- | Plus |
| 2R | 13988943..13989281 | 641..977 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:22 Download gff for
BS09928.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9873285..9873351 | 17..83 | 100 | <- | Plus |
| arm_2R | 9873495..9873600 | 84..189 | 100 | <- | Plus |
| arm_2R | 9875878..9875942 | 190..254 | 100 | <- | Plus |
| arm_2R | 9876003..9876388 | 255..640 | 100 | <- | Plus |
| arm_2R | 9876448..9876786 | 641..977 | 98 | | Plus |
BS09928.5prime Sequence
981 bp (873 high quality bases) assembled on 2006-04-19
> BS09928.5prime
GAAGTTATCAGTCGACATGACTGACGGCGAACAGCAGGAGGCGCTGGTCA
AGCGGGCCGAGGACGAGCGCGAGGACATCTTCCGGCGCTACGAACTCGGG
CTGGATCCCAGCAATGTGGTGGACTCCTGGGAGAATCCCACCTTCGAGAT
CTACCACAGGACAGACAAATATGGCTTCTTGCACGACTCGCGGCTGCCGT
CGACGCGTGATGCCCAGGAGGTGCATCGCAACAAGATTGAAATGGAGCGG
GACAAAAAGTGGATGAAGATGCTAAATCAGTGGCCGCCGCCCCAGGATAA
GCTGCACAAGCGCGTCTACAAGGGCATACCGGATCGCGTGCGTATGGTGG
CCTGGAATAAGCTGCTCGACATCCAGCAATCGATAAACAACAATGCTGGC
GTCTACCTCCGAATGCTGCAGCTGGCCAGGAAGTACTCCACGGAGACGCG
ACAAATCGATGCCGATGTGAATCGTCAGTTTCGCGACAATCTTGCCTTTC
GCGAGCGCTACAGCGTAAAGCAGTGCTCGCTATTCAATGTGCTCAACGCC
TATAGCATCTACAACTCGGAGCTGGGCTACTGCCAGGGCATGGCCTGTGT
GGCTGGCGTGCTGTTGCTTTATTTGCACGAGGAGGAGGCTTTTTGGGCAT
TAAATACCCTGATAACAGACCAAAAATACGGCATGCACGGGCTGTTTATC
GAGGGATTCCCGAAGCTGACGCGATTCATCGATCACCACGACCGCATCAT
GTCGAAAATAATGCGAAAACTACACAAGCACTTTACCAAACACAACGTTG
ACGCCCTGCTGTACGCTATTAAGTGGTTCTTTGTCGTCTTCGTGGAACGC
GTTCCTTTTAGTTTGAGTCTGCGCGTGTGGGATATATTCATGTTAGACGG
CGATCGCGTCATACTGGTCATGGCCATCACCATTCTGTACCTTCACAAGA
CGAACTATTGCGCCTGAAGGACATGGACGCC
BS09928.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8085-PC | 1458 | RN-tre-RC | 1..932 | 17..948 | 4610 | 99.7 | Plus |
| CG8085-PB | 1374 | RN-tre-RB | 1..932 | 17..948 | 4610 | 99.7 | Plus |
| CG8085-PA | 1716 | RN-tre-RA | 1..932 | 17..948 | 4610 | 99.7 | Plus |
| CG8085-PC | 1458 | RN-tre-RC | 932..966 | 947..981 | 175 | 100 | Plus |
| CG8085-PB | 1374 | RN-tre-RB | 932..966 | 947..981 | 175 | 100 | Plus |
| CG8085-PA | 1716 | RN-tre-RA | 932..966 | 947..981 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RN-tre-RF | 2715 | CG8085-RF | 293..1258 | 17..981 | 4775 | 99.7 | Plus |
| RN-tre-RE | 2529 | CG8085-RE | 158..1123 | 17..981 | 4775 | 99.7 | Plus |
| RN-tre-RA | 2623 | CG8085-RA | 293..1258 | 17..981 | 4775 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13988941..13989628 | 852..165 | 3425 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13989685..13989836 | 168..17 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 13988752..13988883 | 981..851 | 580 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:03:44 has no hits.
BS09928.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:05 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8085-PB | 1..966 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:04 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8085-PA | 1..966 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:47 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RA | 288..1258 | 12..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:37 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RA | 288..1258 | 12..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:37 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13988752..13988883 | 851..981 | 97 | <- | Minus |
| 2R | 13988943..13989624 | 169..850 | 100 | <- | Minus |
| 2R | 13989685..13989841 | 12..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:47 Download gff for
BS09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9876257..9876388 | 851..981 | 97 | <- | Minus |
| arm_2R | 9876448..9877129 | 169..850 | 100 | <- | Minus |
| arm_2R | 9877190..9877346 | 12..168 | 98 | | Minus |
BS09928.complete Sequence
1490 bp (1490 high quality bases) assembled on 2006-03-25
> BS09928.complete
GAAGTTATCAGTCGACATGACTGACGGCGAACAGCAGGAGGCGCTGGTCA
AGCGGGCCGAGGACGAGCGCGAGGACATCTTCCGGCGCTACGAACTCGGG
CTGGATCCCAGCAATGTGGTGGACTCCTGGGAGAATCCCACCTTCGAGAT
CTACCACAGGACAGACAAATATGGCTTCTTGCACGACTCGCGGCTGCCGT
CGACGCGTGATGCCCAGGAGGTGCATCGCAACAAGATTGAAATGGAGCGG
GACAAAAAGTGGATGAAGATGCTAAATCAGTGGCCGCCGCCCCAGGATAA
GCTGCACAAGCGCGTCTACAAGGGCATACCGGATCGCGTGCGTATGGTGG
CCTGGAATAAGCTGCTCGACATCCAGCAATCGATAAACAACAATGCTGGC
GTCTACCTCCGAATGCTGCAGCTGGCCAGGAAGTACTCCACGGAGACGCG
ACAAATCGATGCCGATGTGAATCGTCAGTTTCGCGACAATCTTGCCTTTC
GCGAGCGCTACAGCGTAAAGCAGTGCTCGCTATTCAATGTGCTCAACGCC
TATAGCATCTACAACTCGGAGCTGGGCTACTGCCAGGGCATGGCCTGTGT
GGCTGGCGTGCTGTTGCTTTATTTGCACGAGGAGGAGGCTTTTTGGGCAT
TAAATACCCTGATAACAGACCAAAAATACGGCATGCACGGGCTGTTTATC
GAGGGATTCCCGAAGCTGACGCGATTCATCGATCACCACGACCGCATCAT
GTCGAAAATAATGCGAAAACTACACAAGCACTTTACCAAACACAACGTTG
ACGCCCTGCTGTACGCTATTAAGTGGTTCTTTGTCGTCTTCGTGGAACGC
GTTCCTTTTAGTTTGAGTCTGCGCGTGTGGGATATATTCATGTTAGACGG
CGATCGCGTCATACTGTCCATGGCCATCACCATTCTGTACCTTCACAAAG
ACGAACTATTGCGCCTGAAGGACATGGACGCCATCATTGAGTACTTGCAA
GTACGGCTGCACAAGAACTTTGGCTACAGCGACGATGATGCCATTCAGGC
TCTGGAACGCGTGATGAAGAAGCTGAAGGACCTCAAGTTGGATGTGCCGC
CGCCAGCCAAGTCAAACGAGTTCCCCACCCGCAAACTAGGTGACTTCGTG
GAGGCGGATATGGAGAAGAAGATCGGGCGCAGACGCAATGATTATACAGA
CGCGGAGAAGCAAGTCATAACAGATGTGATATCAAGACAAGAACAAAACG
CGATCGACGTTCAGTCCACAGTGTCCTACGAGACTTCGGAGTGCGCAACG
GTTACGCTTACCGTTCCCGAGGATTCGCACTCAATACGAAGTTCGCTTGC
AGGTACTTCAGTTGCCTCGCACGGCTCCTCGGAAACGATGTCGCTGGAGG
ACAACAACATTCACCTGAGGACCGCCAACATGCTGCAGAACACTCCGCAG
CGCGAGATGCTCCTGGGCACCTGAAAGCTTTCTAGACCAT
BS09928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RN-tre-RF | 1641 | CG8085-PF | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| RN-tre-RC | 1458 | CG8085-PC | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| RN-tre-RE | 1407 | CG8085-PE | 1..1289 | 17..1305 | 6430 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RN-tre-RF | 2715 | CG8085-RF | 293..1750 | 17..1474 | 7290 | 100 | Plus |
| RN-tre-RC | 2715 | CG8085-RC | 293..1750 | 17..1474 | 7290 | 100 | Plus |
| RN-tre-RE | 2529 | CG8085-RE | 158..1446 | 17..1305 | 6430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13988941..13989628 | 852..165 | 3425 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13988498..13988883 | 1236..851 | 1930 | 100 | Minus |
| 2R | 25286936 | 2R | 13989685..13989836 | 168..17 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 13985990..13986096 | 1407..1301 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 13985780..13985846 | 1474..1408 | 335 | 100 | Minus |
| 2R | 25286936 | 2R | 13988373..13988439 | 1301..1235 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:07 has no hits.
BS09928.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:03 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 1..1458 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:55 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 267..1729 | 12..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:49 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 293..1749 | 17..1473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:03 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 267..1729 | 12..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:20 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RN-tre-RC | 293..1749 | 17..1473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:20 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13985781..13985846 | 1408..1473 | 100 | <- | Minus |
| 2R | 13985990..13986095 | 1302..1407 | 100 | <- | Minus |
| 2R | 13988373..13988437 | 1237..1301 | 100 | <- | Minus |
| 2R | 13988498..13988883 | 851..1236 | 100 | <- | Minus |
| 2R | 13988943..13989624 | 169..850 | 100 | <- | Minus |
| 2R | 13989685..13989836 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:49 Download gff for
BS09928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9873495..9873600 | 1302..1407 | 100 | <- | Minus |
| arm_2R | 9875878..9875942 | 1237..1301 | 100 | <- | Minus |
| arm_2R | 9873286..9873351 | 1408..1473 | 100 | <- | Minus |
| arm_2R | 9876003..9876388 | 851..1236 | 100 | <- | Minus |
| arm_2R | 9876448..9877129 | 169..850 | 100 | <- | Minus |
| arm_2R | 9877190..9877341 | 17..168 | 100 | | Minus |
BS09928.pep Sequence
Translation from 16 to 1473
> BS09928.pep
MTDGEQQEALVKRAEDEREDIFRRYELGLDPSNVVDSWENPTFEIYHRTD
KYGFLHDSRLPSTRDAQEVHRNKIEMERDKKWMKMLNQWPPPQDKLHKRV
YKGIPDRVRMVAWNKLLDIQQSINNNAGVYLRMLQLARKYSTETRQIDAD
VNRQFRDNLAFRERYSVKQCSLFNVLNAYSIYNSELGYCQGMACVAGVLL
LYLHEEEAFWALNTLITDQKYGMHGLFIEGFPKLTRFIDHHDRIMSKIMR
KLHKHFTKHNVDALLYAIKWFFVVFVERVPFSLSLRVWDIFMLDGDRVIL
SMAITILYLHKDELLRLKDMDAIIEYLQVRLHKNFGYSDDDAIQALERVM
KKLKDLKLDVPPPAKSNEFPTRKLGDFVEADMEKKIGRRRNDYTDAEKQV
ITDVISRQEQNAIDVQSTVSYETSECATVTLTVPEDSHSIRSSLAGTSVA
SHGSSETMSLEDNNIHLRTANMLQNTPQREMLLGT*
BS09928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RN-tre-PF | 546 | CG8085-PF | 1..485 | 1..485 | 2531 | 100 | Plus |
| RN-tre-PC | 485 | CG8085-PC | 1..485 | 1..485 | 2531 | 100 | Plus |
| RN-tre-PE | 468 | CG8085-PE | 1..468 | 1..485 | 2422 | 96.5 | Plus |
| RN-tre-PA | 571 | CG8085-PA | 1..476 | 1..482 | 2268 | 90.9 | Plus |
| RN-tre-PB | 457 | CG8085-PB | 1..428 | 1..428 | 2248 | 100 | Plus |
