Clone Sequence Records
BS09932.3prime Sequence
966 bp (755 high quality bases) assembled on 2006-04-19
> BS09932.3prime
ATGGTCTAGAAAGCTTTCAGTAGGGCGCATATCTGCGACCCGGCGGCGAT
GGACCGCGCATTCCGCGCGACGAAATCATGCGTTCGTCGAATGCATCGCG
ACTAAAGTCCTCGTAACCGTGTGGAGTGGGCGAGCCGTAGCGACTCATTC
CATTGCTGCTACGCGGCGGCGGAGGCGAGCGCCGGCTGAACATAGTGTCG
TATCCACGAGAAACGCTGCAGGAGCGCAGGCTGCCGCTTAAGGTGGGCGG
TAGAGGCATGGGTTCGCGGCGAGAGATGGGCGGCGGTGGGAAGTCGCGCA
TTCGCGAGGTCTGATAGCGACGCTCATACAGATCGCGTGAGTCCTCGAAG
CGGCGGTCATAGTAGTCATAGTCCCTAAAGCCATCCATGATGCGGTCACG
CAGGAACGGCGGCGGCGGTGGTGGCGGCGGATACGGGTCACGACCGTACA
TGCGATCTCTGTAGCCGCCGGCGCTGAGGGGCGATGGCGGCTCGCGTCCG
CCTCCGGCACTGCCGTACAGTCGCGGACACTCTTTCGACCAATGCCCGGA
TCTTCCGCACCGATAGCACTGCTCCGGATCGCCCATGCCCGGCTTGGGGC
GGACCCGACTGGTCGACACTTGAACCTTGAGCGGCTGGCCATCGACAACG
CGACCGTTCAGCTCCTTAATGGCGTCCTGCACATCACCGACACAGTCCAG
ATGGACAAAACCATAGTTGCGCACAATGTCGCATTCGACGACGGTGCCGT
ATTTCTGAAACAGTTCCCGCACCTCCGGCGCCCGCGTCTTGTCCGTTAGA
TTTCCCACGAAGATTTTCGTGGTCGGCGTATTGGGCGCCCGCCGGCTCTT
GGCCGCCCTCACCTTGATGGCGAACTCGTTCAGCGTATAACCGTTCAGAT
TCTGTATGGCATCGCGACCCTGCTGCTCCGTCTCCATGTGAACGAAGCCA
TAGTTCTTCACCACGT
BS09932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8597-PB | 1059 | lark-RB | 110..1059 | 966..17 | 4700 | 99.7 | Minus |
CG8597-PA | 1059 | lark-RA | 110..1059 | 966..17 | 4700 | 99.7 | Minus |
CG8597-PC | 1059 | lark-RC | 110..1059 | 966..17 | 4700 | 99.7 | Minus |
CG8597-PE | 1059 | lark-RE | 110..1059 | 966..17 | 4700 | 99.7 | Minus |
CG8597-PD | 1059 | lark-RD | 110..1059 | 966..17 | 4700 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 386..1335 | 966..17 | 4720 | 99.8 | Minus |
lark-RE | 2087 | CG8597-RE | 715..1664 | 966..17 | 4720 | 99.8 | Minus |
lark-RC | 1784 | CG8597-RC | 412..1361 | 966..17 | 4720 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340178..7340771 | 966..373 | 2940 | 99.7 | Minus |
3L | 28110227 | 3L | 7340875..7341114 | 374..135 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 7341352..7341470 | 135..17 | 595 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 569..510 | 125 | 69.4 | Minus |
BS09932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:12 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8597-PA | 110..1059 | 17..966 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:14 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8597-PD | 110..1059 | 17..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:44 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 412..1361 | 17..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:24 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 412..1361 | 17..966 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:24 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340178..7340770 | 374..966 | 99 | -> | Minus |
3L | 7340876..7341114 | 135..373 | 100 | -> | Minus |
3L | 7341353..7341470 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:44 Download gff for
BS09932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7333278..7333870 | 374..966 | 99 | -> | Minus |
arm_3L | 7333976..7334214 | 135..373 | 100 | -> | Minus |
arm_3L | 7334453..7334570 | 17..134 | 100 | | Minus |
BS09932.5prime Sequence
918 bp (887 high quality bases) assembled on 2006-04-19
> BS09932.5prime
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCC
BS09932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8597-PB | 1059 | lark-RB | 1..902 | 17..918 | 4510 | 100 | Plus |
CG8597-PA | 1059 | lark-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
CG8597-PC | 1059 | lark-RC | 1..902 | 17..918 | 4510 | 100 | Plus |
CG8597-PE | 1059 | lark-RE | 1..902 | 17..918 | 4510 | 100 | Plus |
CG8597-PD | 1059 | lark-RD | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 276..1178 | 16..918 | 4515 | 100 | Plus |
lark-RE | 2087 | CG8597-RE | 605..1507 | 16..918 | 4515 | 100 | Plus |
lark-RC | 1784 | CG8597-RC | 302..1204 | 16..918 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340068..7340771 | 16..719 | 3520 | 100 | Plus |
3L | 28110227 | 3L | 7340875..7341075 | 718..918 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 523..582 | 125 | 69.4 | Plus |
BS09932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:13 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-PB | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:16 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8597-PD | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:35 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 299..1204 | 13..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:36 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 299..1204 | 13..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:36 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340065..7340770 | 13..718 | 99 | -> | Plus |
3L | 7340876..7341075 | 719..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:35 Download gff for
BS09932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7333165..7333870 | 13..718 | 99 | -> | Plus |
arm_3L | 7333976..7334175 | 719..918 | 100 | | Plus |
BS09932.complete Sequence
1091 bp (1091 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636508
> BS09932.complete
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCCTCCGCCGCCGCGTAGCAGCAATGGAATGAGTC
GCTACGGCTCGCCCACTCCACACGGTTACGAGGACTTTAGTCGCGATGCA
TTCGACGAACGCATGATTTCGTCGCGCGGAATGCGCGGTCCATCGCCGCC
GGGTCGCAGATATGCGCCCTACTGAAAGCTTTCTAGACCAT
BS09932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1059 | CG8597-PD | 1..1059 | 17..1075 | 5295 | 100 | Plus |
lark-RE | 1059 | CG8597-PE | 1..1059 | 17..1075 | 5295 | 100 | Plus |
lark-RC | 1059 | CG8597-PC | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 276..1335 | 16..1075 | 5300 | 100 | Plus |
lark-RE | 2087 | CG8597-RE | 605..1664 | 16..1075 | 5300 | 100 | Plus |
lark-RC | 1784 | CG8597-RC | 302..1361 | 16..1075 | 5300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340068..7340771 | 16..719 | 3520 | 100 | Plus |
3L | 28110227 | 3L | 7340875..7341114 | 718..957 | 1200 | 100 | Plus |
3L | 28110227 | 3L | 7341352..7341470 | 957..1075 | 595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 523..582 | 125 | 69.4 | Plus |
BS09932.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:04 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:56 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 291..1353 | 13..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:16 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 303..1360 | 17..1074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:04 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 291..1353 | 13..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:38 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 303..1360 | 17..1074 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:38 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340069..7340770 | 17..718 | 100 | -> | Plus |
3L | 7340876..7341114 | 719..957 | 100 | -> | Plus |
3L | 7341353..7341469 | 958..1074 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:16 Download gff for
BS09932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7333169..7333870 | 17..718 | 100 | -> | Plus |
arm_3L | 7333976..7334214 | 719..957 | 100 | -> | Plus |
arm_3L | 7334453..7334569 | 958..1074 | 100 | | Plus |
BS09932.pep Sequence
Translation from 16 to 1074
> BS09932.pep
MPGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETE
QQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAP
EVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLK
VQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPL
SAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLY
ERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRS
PPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYA
PY*
BS09932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-PD | 352 | CG8597-PD | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PE | 352 | CG8597-PE | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PC | 352 | CG8597-PC | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PA | 352 | CG8597-PA | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PB | 352 | CG8597-PB | 1..352 | 1..352 | 1919 | 100 | Plus |