Clone BS09932 Report

Search the DGRC for BS09932

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptlark-RA
Protein status:BS09932.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09932.3prime Sequence

966 bp (755 high quality bases) assembled on 2006-04-19

> BS09932.3prime
ATGGTCTAGAAAGCTTTCAGTAGGGCGCATATCTGCGACCCGGCGGCGAT
GGACCGCGCATTCCGCGCGACGAAATCATGCGTTCGTCGAATGCATCGCG
ACTAAAGTCCTCGTAACCGTGTGGAGTGGGCGAGCCGTAGCGACTCATTC
CATTGCTGCTACGCGGCGGCGGAGGCGAGCGCCGGCTGAACATAGTGTCG
TATCCACGAGAAACGCTGCAGGAGCGCAGGCTGCCGCTTAAGGTGGGCGG
TAGAGGCATGGGTTCGCGGCGAGAGATGGGCGGCGGTGGGAAGTCGCGCA
TTCGCGAGGTCTGATAGCGACGCTCATACAGATCGCGTGAGTCCTCGAAG
CGGCGGTCATAGTAGTCATAGTCCCTAAAGCCATCCATGATGCGGTCACG
CAGGAACGGCGGCGGCGGTGGTGGCGGCGGATACGGGTCACGACCGTACA
TGCGATCTCTGTAGCCGCCGGCGCTGAGGGGCGATGGCGGCTCGCGTCCG
CCTCCGGCACTGCCGTACAGTCGCGGACACTCTTTCGACCAATGCCCGGA
TCTTCCGCACCGATAGCACTGCTCCGGATCGCCCATGCCCGGCTTGGGGC
GGACCCGACTGGTCGACACTTGAACCTTGAGCGGCTGGCCATCGACAACG
CGACCGTTCAGCTCCTTAATGGCGTCCTGCACATCACCGACACAGTCCAG
ATGGACAAAACCATAGTTGCGCACAATGTCGCATTCGACGACGGTGCCGT
ATTTCTGAAACAGTTCCCGCACCTCCGGCGCCCGCGTCTTGTCCGTTAGA
TTTCCCACGAAGATTTTCGTGGTCGGCGTATTGGGCGCCCGCCGGCTCTT
GGCCGCCCTCACCTTGATGGCGAACTCGTTCAGCGTATAACCGTTCAGAT
TCTGTATGGCATCGCGACCCTGCTGCTCCGTCTCCATGTGAACGAAGCCA
TAGTTCTTCACCACGT

BS09932.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8597-PB 1059 lark-RB 110..1059 966..17 4700 99.7 Minus
CG8597-PA 1059 lark-RA 110..1059 966..17 4700 99.7 Minus
CG8597-PC 1059 lark-RC 110..1059 966..17 4700 99.7 Minus
CG8597-PE 1059 lark-RE 110..1059 966..17 4700 99.7 Minus
CG8597-PD 1059 lark-RD 110..1059 966..17 4700 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 386..1335 966..17 4720 99.8 Minus
lark-RE 2087 CG8597-RE 715..1664 966..17 4720 99.8 Minus
lark-RC 1784 CG8597-RC 412..1361 966..17 4720 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340178..7340771 966..373 2940 99.7 Minus
3L 28110227 3L 7340875..7341114 374..135 1200 100 Minus
3L 28110227 3L 7341352..7341470 135..17 595 100 Minus
Blast to na_te.dros performed 2015-02-10 21:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 569..510 125 69.4 Minus

BS09932.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:12 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8597-PA 110..1059 17..966 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:14 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8597-PD 110..1059 17..966 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:44 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 412..1361 17..966 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:24 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 412..1361 17..966 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:24 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7340178..7340770 374..966 99 -> Minus
3L 7340876..7341114 135..373 100 -> Minus
3L 7341353..7341470 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:44 Download gff for BS09932.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7333278..7333870 374..966 99 -> Minus
arm_3L 7333976..7334214 135..373 100 -> Minus
arm_3L 7334453..7334570 17..134 100   Minus

BS09932.5prime Sequence

918 bp (887 high quality bases) assembled on 2006-04-19

> BS09932.5prime
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCC

BS09932.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8597-PB 1059 lark-RB 1..902 17..918 4510 100 Plus
CG8597-PA 1059 lark-RA 1..902 17..918 4510 100 Plus
CG8597-PC 1059 lark-RC 1..902 17..918 4510 100 Plus
CG8597-PE 1059 lark-RE 1..902 17..918 4510 100 Plus
CG8597-PD 1059 lark-RD 1..902 17..918 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 276..1178 16..918 4515 100 Plus
lark-RE 2087 CG8597-RE 605..1507 16..918 4515 100 Plus
lark-RC 1784 CG8597-RC 302..1204 16..918 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340068..7340771 16..719 3520 100 Plus
3L 28110227 3L 7340875..7341075 718..918 1005 100 Plus
Blast to na_te.dros performed 2015-02-11 10:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 523..582 125 69.4 Plus

BS09932.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:13 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-PB 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:16 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8597-PD 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:35 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 299..1204 13..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:36 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 299..1204 13..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:36 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7340065..7340770 13..718 99 -> Plus
3L 7340876..7341075 719..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:35 Download gff for BS09932.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7333165..7333870 13..718 99 -> Plus
arm_3L 7333976..7334175 719..918 100   Plus

BS09932.complete Sequence

1091 bp (1091 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636508

> BS09932.complete
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCCTCCGCCGCCGCGTAGCAGCAATGGAATGAGTC
GCTACGGCTCGCCCACTCCACACGGTTACGAGGACTTTAGTCGCGATGCA
TTCGACGAACGCATGATTTCGTCGCGCGGAATGCGCGGTCCATCGCCGCC
GGGTCGCAGATATGCGCCCTACTGAAAGCTTTCTAGACCAT

BS09932.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1059 CG8597-PD 1..1059 17..1075 5295 100 Plus
lark-RE 1059 CG8597-PE 1..1059 17..1075 5295 100 Plus
lark-RC 1059 CG8597-PC 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 276..1335 16..1075 5300 100 Plus
lark-RE 2087 CG8597-RE 605..1664 16..1075 5300 100 Plus
lark-RC 1784 CG8597-RC 302..1361 16..1075 5300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340068..7340771 16..719 3520 100 Plus
3L 28110227 3L 7340875..7341114 718..957 1200 100 Plus
3L 28110227 3L 7341352..7341470 957..1075 595 100 Plus
Blast to na_te.dros performed 2014-11-27 01:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 523..582 125 69.4 Plus

BS09932.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:04 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:56 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 291..1353 13..1075 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:16 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 303..1360 17..1074 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:04 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 291..1353 13..1075 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:38 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 303..1360 17..1074 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:38 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7340069..7340770 17..718 100 -> Plus
3L 7340876..7341114 719..957 100 -> Plus
3L 7341353..7341469 958..1074 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:16 Download gff for BS09932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7333169..7333870 17..718 100 -> Plus
arm_3L 7333976..7334214 719..957 100 -> Plus
arm_3L 7334453..7334569 958..1074 100   Plus

BS09932.pep Sequence

Translation from 16 to 1074

> BS09932.pep
MPGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETE
QQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAP
EVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLK
VQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPL
SAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLY
ERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRS
PPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYA
PY*

BS09932.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
lark-PD 352 CG8597-PD 1..352 1..352 1919 100 Plus
lark-PE 352 CG8597-PE 1..352 1..352 1919 100 Plus
lark-PC 352 CG8597-PC 1..352 1..352 1919 100 Plus
lark-PA 352 CG8597-PA 1..352 1..352 1919 100 Plus
lark-PB 352 CG8597-PB 1..352 1..352 1919 100 Plus