Clone Sequence Records
BS09935.3prime Sequence
964 bp (829 high quality bases) assembled on 2006-04-20
> BS09935.3prime
ATGGTCTAGAAAGCTTTTACTGCTCGGCCATCATGCAAAACTTGTCGGCC
ATCAGGGTGAGCACCTTTTCCAGTTTGTTGTGCCGATCTTCGGCCTTGGC
CGTTGCTCCGGAACTGCCCCATAGGAACTTGACATGGAACTCGGTTCGAA
AAGCATCAGCTAGAAGCTCATCGAGCCGAGGACTAGCATCCTCCAGGATG
ATCTTGGCATTCTTTCGATACAGTTCCAAGTTCTTCAGGAAGCCACGCGA
TGCATCCAGGTGCTGGAAATTAATGGTCATGCCAAAGTCATCCGCTTTCG
ACTCCCAAGGAGCAATACAGGTGTGGTACAGAGCTGGGCGATCGTCAATG
TTGGAGTGGTTTATGATGTCCATAACGGGTCGATCGATCAGTAGTGCATA
CAGCAGAACATGGGGAACGGTTGTGTTTGGAGCCTGTGGATTGGAGGCCT
CGTTCATGATGCTCAACGTGGGTCGCAACTTGGCCTCGAAGGTGAAGGCG
CTGTCCGTGTACTGTTGCCTCAGGATGTGCCAGGCCTGGTCGAGCTTTTG
GATCTGTTGCATGCACAGGCCCAACATGATGGCGCAGAATCCAAACAGAT
TGCCGAGAGCCGTCTTAGTTTCCACTGCGATCTGAATCCATTTACTGAGC
AGTTGGGCTCGGTCCAGATCCGTTTGACAGGTGAGTATGGTCACAGCGAC
CATCAGCTTGATGCACTGCGTCCGCTCTATTATGTCCTCCCTAAAGACCT
TTCCATGGGGCAGTGTTAGCAGCTCAAGACCCGAACAGCTCAGATAGTAG
TCCTCCTCGTTCGACGGCTCCTCCAAAAACAGGGCAATGTCGATGCGAGT
GATGTGCTCCGCCAGCAGCTTTGGGCCCGTCTCAGAAGCATCATCTTGAA
CGTGTTGAGGGCATCGCCATCCAGGGGCTTGTTCTCACAGATGGCAGTAA
CAAAGTAACAAAGT
BS09935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PA | 2835 | CG9098-RA | 1969..2835 | 883..17 | 4335 | 100 | Minus |
| CG9098-PB | 2262 | CG9098-RB | 1396..2262 | 883..17 | 4335 | 100 | Minus |
| CG9098-PA | 2835 | CG9098-RA | 1915..1968 | 936..883 | 270 | 100 | Minus |
| CG9098-PB | 2262 | CG9098-RB | 1342..1395 | 936..883 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 1977..2926 | 964..17 | 4685 | 99.7 | Minus |
| CG9098-RB | 2998 | CG9098-RB | 1646..2595 | 964..17 | 4685 | 99.7 | Minus |
| CG9098-RA | 3481 | CG9098-RA | 1988..2937 | 964..17 | 4685 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6008096..6008505 | 147..556 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 6008755..6009167 | 554..964 | 1950 | 99.3 | Plus |
| 2L | 23513712 | 2L | 6007908..6008038 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:03:55 has no hits.
BS09935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:17 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1313..2262 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:21 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1313..2262 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:17 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 1988..2940 | 12..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:25 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 1988..2940 | 12..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:25 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6007905..6008037 | 12..146 | 98 | <- | Plus |
| 2L | 6008096..6008502 | 147..553 | 100 | <- | Plus |
| 2L | 6008755..6009167 | 554..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:17 Download gff for
BS09935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6007905..6008037 | 12..146 | 98 | <- | Plus |
| arm_2L | 6008096..6008502 | 147..553 | 100 | <- | Plus |
| arm_2L | 6008755..6009167 | 554..964 | 99 | | Plus |
BS09935.5prime Sequence
918 bp (837 high quality bases) assembled on 2006-04-19
> BS09935.5prime
GAAGTTATCAGTCGACATGGAGGGCTATGGGAGCAGCAATGCCACCACTC
CGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCC
CTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCG
TTCCCACGCCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGA
TCGTGCAGCGCGAAGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCG
GACAACTATGTGCTCAGTTGCCGGAGCAAAGCGGCTGTACTGCACTTCGT
ACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGT
ACCAGTTTGAGGAGGATGCCTTCGATACGGTGCCCGACCTAATTACCTTC
TACGTGGGATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCA
GTTTCCCTGCAATCGCACCTATCCGCTCTCCTTCTACGGCCACAAGATCG
TGGGCAACCAACTGCACACGCAGATGCTGGCCGGTCTGCGAGGTCTGAGT
CCTCTGAACTCGCCGATGGGCAGCAATGGTGCAGTGGGAGCAGGTATGAA
CGCTACCTTTCGCTTCGAACCGCAGCAGCAGCAGCAGCAACAGCTCTCGC
CGATGGCTGGCTCACCGGCCAGTCCGCACTGCTCGCCGCCGCGGGCGCGT
AGAGAGGTGCCTCCACCGCCGCGGCTGCCGTGCAAGAAGCAACAGCGCTC
CCAGAGCCTCACACCGGCCCAGGCCATGTTGGTCAGCAACATCAACAAGC
TTCAGGAGCAACAACTACAGATGCAGGAGCTCGAGAATGGCAATGGCAAC
GGAATAATGCGCTTCCAAGACATCGCCAGGTGCAATCCGACCAGTGAGCA
GCACCTGGAGAGCAAGTT
BS09935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PA | 2835 | CG9098-RA | 574..1424 | 17..867 | 4255 | 100 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG9098-PA | 2835 | CG9098-RA | 1429..1475 | 872..918 | 235 | 100 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 856..902 | 872..918 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..1566 | 17..918 | 4465 | 99.8 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..1235 | 17..918 | 4465 | 99.8 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..1577 | 17..918 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009633..6010242 | 918..309 | 2990 | 99.3 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 314..17 | 1475 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 00:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 126..157 | 124 | 87.5 | Plus |
BS09935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:18 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:22 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:14:41 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1577 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:59 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1577 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:59 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6009633..6010240 | 311..918 | 99 | <- | Minus |
| 2L | 6010313..6010610 | 9..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:14:41 Download gff for
BS09935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6010313..6010610 | 9..310 | 98 | | Minus |
| arm_2L | 6009633..6010240 | 311..918 | 99 | <- | Minus |
BS09935.complete Sequence
2294 bp assembled on 2010-05-10
GenBank Submission: KX804529
> BS09935.complete
GAAGTTATCAGTCGACATGGAGGGCTATGGGAGCAGCAATGCCACCACTC
CGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCC
CTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCG
TTCCCACGCCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGA
TCGTGCAGCGCGAAGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCG
GACAACTATGTGCTCAGTTGCCGGAGCAAAGCGGCTGTACTGCACTTCGT
ACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGT
ACCAGTTTGAGGAGGATGCCTTCGATACGGTGCCCGACCTAATTACCTTC
TACGTGGGATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCA
GTTTCCCTGCAATCGCACCTATCCGCTCTCCTTCTACGGCCACAAGATCG
TGGGCAACCAACTGCACACGCAGATGCTGGCCGGTCTGCGAGGTCTGAGT
CCTCTGAACTCGCCGATGGGCAGCAATGGTGCAGTGGGAGCAGGTATGAA
CGCTACCTTTCGCTTCGAACCGCAGCAGCAGCAGCAGCAACAGCTCTCGC
CGATGGCTGGCTCACCGGCCAGTCCGCACTGCTCGCCGCCGCGGGCGCGT
AGAGAGGTGCCTCCACCGCCGCGGCTGCCGTGCAAGAAGCAACAGCGCTC
CCAGAGCCTCACACCGGCCCAGGCCATGTTGGTCAGCAACATCAACAAGC
TTCAGGAGCAACAACTACAGATGCAGGAGCTCGAGAATGGCAATGGCAAC
GGAATAATGCGCTTCCAGACAATCGCCAGGTGCAATCCGACCAGTGAGCA
GCACCTGGAGAGCAAGTTCACAACCCACTCGCTGCCCAGACCCAACACTT
CGGCGGCGCACGCTCTGCGCCAGCAAGCGGTGGCCCGAATCTCGAGCCTG
GCGAGAAACTGCAGCCTGGACTCGCCGTCGGACTCACGGCCGCCCAGTCC
GCCGCCCAAGCCACGCAAGGAACCCATGGCAGCGGTGCTGGCATACCAGG
CCAGTGGATCCGACTCGGGGAACGGGTCCGGTGATTCGGCTCTAGGGGAT
GCATGTGAGGCGAGCGTACAGCGGGGTGTGATAATCAAGAATCCCCGATT
CATGACCACTTCGGTCTCGAACGGAACGCTGAAGAGCTTCACGGAGTTCG
ACGTCCTGGCCGCTGAGGAAGAACTATTCACCATGGCCATAGAAGAAGTT
AAAACAGCAAGCAAGTTTGACTTTGAGAACTTTGTTACTTTGCTACTGCC
ATCTGTGGAGAACAAGCCCCTGGATGGCGATGCCCTCAACACGTTCAAGA
TGATGCTTCTGGAGACGGGCCCAAAGCTGCTGGCGGAGCACATCACTCGC
ATCGACATTGCCCTGTTTTTGGAGGAGCCGTCGAACGAGGAGGACTACTA
TCTGAGCTGTTCGGGTCTTGAGCTGCTAACACTGCCCCATGGAAAGGTCT
TTAGGGAGGACATAATAGAGCGGACGCAGTGCATCAAGCTGATGGTCGCT
GTGACCATACTCACCTGTCAAACGGATCTGGACCGAGCCCAACTGCTCAG
TAAATGGATTCAGATCGCAGTGGAAACTAAGACGGCTCTCGGCAATCTGT
TTGGATTCTGCGCCATCATGTTGGGCCTGTGCATGCAACAGATCCAAAAG
CTCGACCAGGCCTGGCACATCCTGAGGCAACAGTACACGGACAGCGCCTT
CACCTTCGAGGCCAAGTTGCGACCCACGTTGAGCATCATGAACGAGGCCT
CCAATCCACAGGCTCCAAACACAACCGTTCCCCATGTTCTGCTGTATGCA
CTACTGATCGATCGACCCGTTATGGACATCATAAACCACTCCAACATTGA
CGATCGCCCAGCTCTGTACCACACCTGTATTGCTCCTTGGGAGTCGAAAG
CGGATGACTTTGGCATGACCATTAATTTCCAGCACCTGGATGCATCGCGT
GGCTTCCTGAAGAACTTGGAACTGTATCGAAAGAATGCCAAGATCATCCT
GGAGGATGCTAGTCCTCGGCTCGATGAGCTTCTAGCTGATGCTTTTCGAA
CCGAGTTCCATGTCAAGTTCCTATGGGGCAGTTCCGGAGCAACGGCCAAG
GCCGAAGATCGGCACAACAAACTGGAAAAGGTGCTCACCCTGATGGCCGA
CAAGTTTTGCATGATGGCCGAGCAGTAAAAGCTTTCTAGACCAT
BS09935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 2262 | CG9098-PC | 1..2262 | 17..2278 | 11310 | 100 | Plus |
| CG9098-RB | 2262 | CG9098-PB | 1..2262 | 17..2278 | 11310 | 100 | Plus |
| CG9098-RA | 2835 | CG9098-PA | 574..2835 | 17..2278 | 11310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..2926 | 17..2278 | 11310 | 100 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..2595 | 17..2278 | 11310 | 100 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..2937 | 17..2278 | 11310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009240..6010242 | 1311..309 | 5000 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6008755..6009189 | 1741..1307 | 2175 | 100 | Minus |
| 2L | 23513712 | 2L | 6008096..6008505 | 2148..1739 | 2050 | 100 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 314..17 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6007908..6008038 | 2278..2148 | 655 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 126..157 | 124 | 87.5 | Plus |
BS09935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:15 Download gff for
BS09935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RB | 304..2563 | 17..2276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:35 Download gff for
BS09935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 676..2935 | 17..2276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:07 Download gff for
BS09935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 676..2935 | 17..2276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:07 Download gff for
BS09935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6007910..6008037 | 2149..2276 | 100 | <- | Minus |
| 2L | 6008096..6008502 | 1742..2148 | 100 | <- | Minus |
| 2L | 6008755..6009189 | 1307..1741 | 100 | <- | Minus |
| 2L | 6009245..6010240 | 311..1306 | 100 | <- | Minus |
| 2L | 6010313..6010606 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:35 Download gff for
BS09935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6007910..6008037 | 2149..2276 | 100 | <- | Minus |
| arm_2L | 6008096..6008502 | 1742..2148 | 100 | <- | Minus |
| arm_2L | 6008755..6009189 | 1307..1741 | 100 | <- | Minus |
| arm_2L | 6009245..6010240 | 311..1306 | 100 | <- | Minus |
| arm_2L | 6010313..6010606 | 17..310 | 100 | | Minus |
BS09935.pep Sequence
Translation from 16 to 2277
> BS09935.pep
MEGYGSSNATTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWY
HGALPRQRAEEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLV
LQPETVYERVQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNR
TYPLSFYGHKIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRF
EPQQQQQQQLSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTP
AQAMLVSNINKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESK
FTTHSLPRPNTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPR
KEPMAAVLAYQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSV
SNGTLKSFTEFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENK
PLDGDALNTFKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSG
LELLTLPHGKVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQI
AVETKTALGNLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAK
LRPTLSIMNEASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPAL
YHTCIAPWESKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASP
RLDELLADAFRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMM
AEQ*
BS09935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PC | 753 | CG9098-PC | 1..753 | 1..753 | 3901 | 100 | Plus |
| CG9098-PB | 753 | CG9098-PB | 1..753 | 1..753 | 3901 | 100 | Plus |
| CG9098-PA | 944 | CG9098-PA | 192..944 | 1..753 | 3901 | 100 | Plus |
