Clone BS09938 Report

Search the DGRC for BS09938

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG3016-RA
Protein status:BS09938.pep: full length peptide match
Sequenced Size:1709

Clone Sequence Records

BS09938.3prime Sequence

832 bp (772 high quality bases) assembled on 2006-04-19

> BS09938.3prime
ATGGTCTAGAAAGCTTCTAGCGCAGATTTAGCTGCCTCTGCTGGCCACGA
TCGTAGAATAAAAGATAGGCGGGGACGCTCAACACCTCGTCGATGCTCAC
CTCCCGCACAATTGTATCCGATGTGTAGTACCACCGATGTGCGTTCCGCA
ACGAGCCACGCCTGTAGGTTACAAAGTGACCGCTGTTTGCCTCCCCGGAG
TGCACCACCACGGCCAGAAGCCGGTAAAGATTCTTGGGGAACATCGTGCC
AAAGCCCTCGCCACCACCAACGCCATTGTTCATCGGCAGGCTGGAGGAAT
ACAGCGACATTGTCGAGCCCCAGGGAGTGCCAGCCTGGCTATTGAGATGC
GGCTGCACGAAGCTGTAGGGCGCCATGGAGAGGCTCTCGGGGAAGTGTAC
ATAGTCCTTCCGCTTGCACACCTGTCCAGTTGGCAGCCACACCGTCCGCG
CCACATGGATGCACAGGCAGGCCGGTAGTTTAGCGAACGTAACCGATTTG
GTGTGCGTGGTGGTCTCGTTGCAGGAGTCACACTTGACATCGCTCAGATC
CTCCGATGTGATATACTCGCTAAGCAAGTGGCCCAAACTCAAGCCAGTTC
TGCGTTGCGGCGGCAGATTTAGCGTTATGCTGTCGAACTTATCGTACCGA
ACGGCCGACTTGGAGCCGCAGCCATTGCACACGATCTGTGCGCCCATGGC
GCCCTGAAACGGATGCGCCACTTGGCTGGGCATCATGTTGGACCAGATGG
ACACCCGACCTGGTCCGCGATGCAGGCGCTCTAGCGATCGACAGGAGCTG
GACACCCGGCGATTCAGACCCTCATCCTGCTG

BS09938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-PA 1677 CG3016-RA 862..1677 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-RB 2267 CG3016-RB 1022..1837 832..17 4080 100 Minus
CG3016-RA 2436 CG3016-RA 1191..2006 832..17 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5878045..5878543 334..832 2495 100 Plus
X 23542271 X 5877604..5877808 133..337 1025 100 Plus
X 23542271 X 5877430..5877548 17..135 595 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:12:51 has no hits.

BS09938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:21 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-PA 862..1677 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:27 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-PA 862..1677 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:20:08 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 1191..2006 17..832 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:55 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 1191..2006 17..832 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:55 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5877430..5877547 17..134 100 <- Plus
X 5877606..5877805 135..334 100 <- Plus
X 5878046..5878543 335..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:20:08 Download gff for BS09938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5771463..5771580 17..134 100 <- Plus
arm_X 5771639..5771838 135..334 100 <- Plus
arm_X 5772079..5772576 335..832 100   Plus

BS09938.5prime Sequence

726 bp (654 high quality bases) assembled on 2006-04-19

> BS09938.5prime
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATTGAT
GAGAGCACCAGTTTGCAACGATTGGTGCGTTCCGAGGCCCACACACCGGA
TTCGCCTGCCTCTGTTTTGCGAACGC

BS09938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-PA 1677 CG3016-RA 1..630 17..646 3150 100 Plus
CG3016-PA 1677 CG3016-RA 630..700 647..717 330 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-RB 2267 CG3016-RB 160..868 16..726 3490 99.6 Plus
CG3016-RA 2436 CG3016-RA 329..1037 16..726 3490 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5878705..5879323 717..98 3035 99.7 Minus
X 23542271 X 5879375..5879459 100..16 425 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:11:28 has no hits.

BS09938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:22 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-PA 1..708 17..726 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:28 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-PA 1..708 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:23 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 326..1037 10..726 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:24 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 326..1037 10..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:24 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5878697..5879322 99..726 99 <- Minus
X 5879377..5879462 10..98 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:23 Download gff for BS09938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5772730..5773355 99..726 99 <- Minus
arm_X 5773410..5773495 10..98 96   Minus

BS09938.complete Sequence

1709 bp assembled on 2009-08-26

GenBank Submission: KX803313

> BS09938.complete
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATG
AGAGCACCAGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGAT
TCGCCTGCCTCTGTTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGT
GCTTCTGGATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCA
GCAATCCGGATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCG
CGACCGCGACTTCCACAATCCCAACAGCAGCAGGATGAGGGTCTGAATCG
CCGGGTGTCCAGCTCCTGTCGATCGCTAGAGCGCCTGCATCGCGGACCAG
GTCGGGTGTCCATCTGGTCCAACATGATGCCCAGCCAAGTGGCGCATCCG
TTTCAGGGCGCCATGGGCGCACAGATCGTGTGCAATGGCTGCGGCTCCAA
GTCGGCCGTTCGGTACGATAAGTTCGACAGCATAACGCTAAATCTGCCGC
CGCAACGCAGAACTGGCTTGAGTTTGGGCCACTTGCTTAGCGAGTATATC
ACATCGGAGGATCTGAGCGATGTCAAGTGTGACTCCTGCAACGAGACCAC
CACGCACACCAAATCGGTTACGTTCGCTAAACTACCGGCCTGCCTGTGCA
TCCATGTGGCGCGGACGGTGTGGCTGCCAACTGGACAGGTGTGCAAGCGG
AAGGACTATGTACACTTCCCCGAGAGCCTCTCCATGGCGCCCTACAGCTT
CGTGCAGCCGCATCTCAATAGCCAGGCTGGCACTCCCTGGGGCTCGACAA
TGTCGCTGTATTCCTCCAGCCTGCCGATGAACAATGGCGTTGGTGGTGGC
GAGGGCTTTGGCACGATGTTCCCCAAGAATCTTTACCGGCTTCTGGCCGT
GGTGGTGCACTCCGGGGAGGCAAACAGCGGTCACTTTGTAACCTACAGGC
GTGGCTCGTTGCGGAACGCACATCGGTGGTACTACACATCGGATACAATT
GTGCGGGAGGTGAGCATCGACGAGGTGTTGAGCGTCCCCGCCTATCTTTT
ATTCTACGATCGTGGCCAGCAGAGGCAGCTAAATCTGCGCTAGAAGCTTT
CTAGACCAT

BS09938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-RB 1677 CG3016-PB 1..1677 17..1693 8385 100 Plus
CG3016-RA 1677 CG3016-PA 1..1677 17..1693 8385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-RB 2267 CG3016-RB 160..1837 16..1693 8390 100 Plus
CG3016-RA 2436 CG3016-RA 329..2006 16..1693 8390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5878045..5879323 1376..98 6395 100 Minus
X 23542271 X 5877604..5877808 1577..1373 1025 100 Minus
X 23542271 X 5877430..5877548 1693..1575 595 100 Minus
X 23542271 X 5879375..5879459 100..16 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:34:33 has no hits.

BS09938.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:20 Download gff for BS09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 376..2052 17..1693 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:32 Download gff for BS09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 330..2006 17..1693 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:50 Download gff for BS09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG3016-RA 330..2006 17..1693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:50 Download gff for BS09938.complete
Subject Subject Range Query Range Percent Splice Strand
X 5879377..5879458 17..98 100   Minus
X 5877430..5877547 1576..1693 100 <- Minus
X 5877606..5877805 1376..1575 100 <- Minus
X 5878046..5879322 99..1375 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:32 Download gff for BS09938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5771463..5771580 1576..1693 100 <- Minus
arm_X 5771639..5771838 1376..1575 100 <- Minus
arm_X 5772079..5773355 99..1375 100 <- Minus
arm_X 5773410..5773491 17..98 100   Minus

BS09938.pep Sequence

Translation from 16 to 1692

> BS09938.pep
MESEKILMAAGVTVAAVVGAFVFWGPSGSRLRQRRGQIAGLHNFGLTCFL
NTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRG
DPYSPGAVLRALNALGWVIPQEEHDAHELFHVLLTCLEEEAIRPQPLGCL
SDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSA
MLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAV
SPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSS
CRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRY
DKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKS
VTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHL
NSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSG
EANSGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDRG
QQRQLNLR*

BS09938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3016-PB 558 CG3016-PB 1..558 1..558 2933 100 Plus
CG3016-PA 558 CG3016-PA 1..558 1..558 2933 100 Plus
Ubpy-PB 367 CG5798-PB 167..357 323..547 208 27.2 Plus
Ubpy-PA 896 CG5798-PA 696..886 323..547 208 27.2 Plus