Clone Sequence Records
BS09938.3prime Sequence
832 bp (772 high quality bases) assembled on 2006-04-19
> BS09938.3prime
ATGGTCTAGAAAGCTTCTAGCGCAGATTTAGCTGCCTCTGCTGGCCACGA
TCGTAGAATAAAAGATAGGCGGGGACGCTCAACACCTCGTCGATGCTCAC
CTCCCGCACAATTGTATCCGATGTGTAGTACCACCGATGTGCGTTCCGCA
ACGAGCCACGCCTGTAGGTTACAAAGTGACCGCTGTTTGCCTCCCCGGAG
TGCACCACCACGGCCAGAAGCCGGTAAAGATTCTTGGGGAACATCGTGCC
AAAGCCCTCGCCACCACCAACGCCATTGTTCATCGGCAGGCTGGAGGAAT
ACAGCGACATTGTCGAGCCCCAGGGAGTGCCAGCCTGGCTATTGAGATGC
GGCTGCACGAAGCTGTAGGGCGCCATGGAGAGGCTCTCGGGGAAGTGTAC
ATAGTCCTTCCGCTTGCACACCTGTCCAGTTGGCAGCCACACCGTCCGCG
CCACATGGATGCACAGGCAGGCCGGTAGTTTAGCGAACGTAACCGATTTG
GTGTGCGTGGTGGTCTCGTTGCAGGAGTCACACTTGACATCGCTCAGATC
CTCCGATGTGATATACTCGCTAAGCAAGTGGCCCAAACTCAAGCCAGTTC
TGCGTTGCGGCGGCAGATTTAGCGTTATGCTGTCGAACTTATCGTACCGA
ACGGCCGACTTGGAGCCGCAGCCATTGCACACGATCTGTGCGCCCATGGC
GCCCTGAAACGGATGCGCCACTTGGCTGGGCATCATGTTGGACCAGATGG
ACACCCGACCTGGTCCGCGATGCAGGCGCTCTAGCGATCGACAGGAGCTG
GACACCCGGCGATTCAGACCCTCATCCTGCTG
BS09938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-PA | 1677 | CG3016-RA | 862..1677 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-RB | 2267 | CG3016-RB | 1022..1837 | 832..17 | 4080 | 100 | Minus |
CG3016-RA | 2436 | CG3016-RA | 1191..2006 | 832..17 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5878045..5878543 | 334..832 | 2495 | 100 | Plus |
X | 23542271 | X | 5877604..5877808 | 133..337 | 1025 | 100 | Plus |
X | 23542271 | X | 5877430..5877548 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:12:51 has no hits.
BS09938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:21 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-PA | 862..1677 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:27 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-PA | 862..1677 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:20:08 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 1191..2006 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:55 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 1191..2006 | 17..832 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:55 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5877430..5877547 | 17..134 | 100 | <- | Plus |
X | 5877606..5877805 | 135..334 | 100 | <- | Plus |
X | 5878046..5878543 | 335..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:20:08 Download gff for
BS09938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5771463..5771580 | 17..134 | 100 | <- | Plus |
arm_X | 5771639..5771838 | 135..334 | 100 | <- | Plus |
arm_X | 5772079..5772576 | 335..832 | 100 | | Plus |
BS09938.5prime Sequence
726 bp (654 high quality bases) assembled on 2006-04-19
> BS09938.5prime
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATTGAT
GAGAGCACCAGTTTGCAACGATTGGTGCGTTCCGAGGCCCACACACCGGA
TTCGCCTGCCTCTGTTTTGCGAACGC
BS09938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-PA | 1677 | CG3016-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
CG3016-PA | 1677 | CG3016-RA | 630..700 | 647..717 | 330 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-RB | 2267 | CG3016-RB | 160..868 | 16..726 | 3490 | 99.6 | Plus |
CG3016-RA | 2436 | CG3016-RA | 329..1037 | 16..726 | 3490 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5878705..5879323 | 717..98 | 3035 | 99.7 | Minus |
X | 23542271 | X | 5879375..5879459 | 100..16 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:11:28 has no hits.
BS09938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:22 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-PA | 1..708 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:28 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-PA | 1..708 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:23 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 326..1037 | 10..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:24 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 326..1037 | 10..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:24 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5878697..5879322 | 99..726 | 99 | <- | Minus |
X | 5879377..5879462 | 10..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:23 Download gff for
BS09938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5772730..5773355 | 99..726 | 99 | <- | Minus |
arm_X | 5773410..5773495 | 10..98 | 96 | | Minus |
BS09938.complete Sequence
1709 bp assembled on 2009-08-26
GenBank Submission: KX803313
> BS09938.complete
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATG
AGAGCACCAGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGAT
TCGCCTGCCTCTGTTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGT
GCTTCTGGATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCA
GCAATCCGGATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCG
CGACCGCGACTTCCACAATCCCAACAGCAGCAGGATGAGGGTCTGAATCG
CCGGGTGTCCAGCTCCTGTCGATCGCTAGAGCGCCTGCATCGCGGACCAG
GTCGGGTGTCCATCTGGTCCAACATGATGCCCAGCCAAGTGGCGCATCCG
TTTCAGGGCGCCATGGGCGCACAGATCGTGTGCAATGGCTGCGGCTCCAA
GTCGGCCGTTCGGTACGATAAGTTCGACAGCATAACGCTAAATCTGCCGC
CGCAACGCAGAACTGGCTTGAGTTTGGGCCACTTGCTTAGCGAGTATATC
ACATCGGAGGATCTGAGCGATGTCAAGTGTGACTCCTGCAACGAGACCAC
CACGCACACCAAATCGGTTACGTTCGCTAAACTACCGGCCTGCCTGTGCA
TCCATGTGGCGCGGACGGTGTGGCTGCCAACTGGACAGGTGTGCAAGCGG
AAGGACTATGTACACTTCCCCGAGAGCCTCTCCATGGCGCCCTACAGCTT
CGTGCAGCCGCATCTCAATAGCCAGGCTGGCACTCCCTGGGGCTCGACAA
TGTCGCTGTATTCCTCCAGCCTGCCGATGAACAATGGCGTTGGTGGTGGC
GAGGGCTTTGGCACGATGTTCCCCAAGAATCTTTACCGGCTTCTGGCCGT
GGTGGTGCACTCCGGGGAGGCAAACAGCGGTCACTTTGTAACCTACAGGC
GTGGCTCGTTGCGGAACGCACATCGGTGGTACTACACATCGGATACAATT
GTGCGGGAGGTGAGCATCGACGAGGTGTTGAGCGTCCCCGCCTATCTTTT
ATTCTACGATCGTGGCCAGCAGAGGCAGCTAAATCTGCGCTAGAAGCTTT
CTAGACCAT
BS09938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-RB | 1677 | CG3016-PB | 1..1677 | 17..1693 | 8385 | 100 | Plus |
CG3016-RA | 1677 | CG3016-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-RB | 2267 | CG3016-RB | 160..1837 | 16..1693 | 8390 | 100 | Plus |
CG3016-RA | 2436 | CG3016-RA | 329..2006 | 16..1693 | 8390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5878045..5879323 | 1376..98 | 6395 | 100 | Minus |
X | 23542271 | X | 5877604..5877808 | 1577..1373 | 1025 | 100 | Minus |
X | 23542271 | X | 5877430..5877548 | 1693..1575 | 595 | 100 | Minus |
X | 23542271 | X | 5879375..5879459 | 100..16 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:33 has no hits.
BS09938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:20 Download gff for
BS09938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 376..2052 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:32 Download gff for
BS09938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 330..2006 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:50 Download gff for
BS09938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3016-RA | 330..2006 | 17..1693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:50 Download gff for
BS09938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5879377..5879458 | 17..98 | 100 | | Minus |
X | 5877430..5877547 | 1576..1693 | 100 | <- | Minus |
X | 5877606..5877805 | 1376..1575 | 100 | <- | Minus |
X | 5878046..5879322 | 99..1375 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:32 Download gff for
BS09938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5771463..5771580 | 1576..1693 | 100 | <- | Minus |
arm_X | 5771639..5771838 | 1376..1575 | 100 | <- | Minus |
arm_X | 5772079..5773355 | 99..1375 | 100 | <- | Minus |
arm_X | 5773410..5773491 | 17..98 | 100 | | Minus |
BS09938.pep Sequence
Translation from 16 to 1692
> BS09938.pep
MESEKILMAAGVTVAAVVGAFVFWGPSGSRLRQRRGQIAGLHNFGLTCFL
NTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRG
DPYSPGAVLRALNALGWVIPQEEHDAHELFHVLLTCLEEEAIRPQPLGCL
SDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSA
MLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAV
SPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSS
CRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRY
DKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKS
VTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHL
NSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSG
EANSGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDRG
QQRQLNLR*
BS09938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3016-PB | 558 | CG3016-PB | 1..558 | 1..558 | 2933 | 100 | Plus |
CG3016-PA | 558 | CG3016-PA | 1..558 | 1..558 | 2933 | 100 | Plus |
Ubpy-PB | 367 | CG5798-PB | 167..357 | 323..547 | 208 | 27.2 | Plus |
Ubpy-PA | 896 | CG5798-PA | 696..886 | 323..547 | 208 | 27.2 | Plus |