Clone Sequence Records
BS09943.3prime Sequence
429 bp (428 high quality bases) assembled on 2006-04-19
> BS09943.3prime
ATGGTCTAGAAAGCTTTTATGTGCATCTCTTGGGCATTTTGCAAAACATT
TTTACATGCGCCGGCTGTTGTTTCAAATTCCAGTTCAAGTCACAACCATG
ATGGGGCAAGTGGCAAGTGGCAAGTGGAGGTGCGGCAAGTGGCTCGGCGG
ATTGCCGCTGAATAATCCACCCAACCGGGCCGCAAAAAAGAAAAAAAAAC
GAACATTCACATTCAGAGCGGTTAAGTGTTACGCTGGAGCGTAACCAAAG
TGTCGTCGTTGCTGTTTTTGTCGCCCGCCTTTCGCTCAAGTGCAAATCTC
CAGATGGAATAAAAAAGCGTAAAAAATTTGTACCACCACCCCCCTTCCCA
ACCCACTTGAGATTCCGCATGTCCTGTGTGTGTTTCGGTTTGGTTTTCCA
GGGATTACGCGGCATGTCGACTGATAACT
BS09943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30282-PA | 399 | CG30282-RA | 1..399 | 415..17 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 02:26:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21489428..21489828 | 15..415 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:29 has no hits.
BS09943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:31 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30282-PA | 1..399 | 17..415 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:41 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30282-PA | 1..399 | 17..415 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:37 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489423..21489835 | 10..421 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:37 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489423..21489835 | 10..421 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:26 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376928..17377340 | 10..421 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:26 Download gff for
BS09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376928..17377340 | 10..421 | 98 | | Plus |
BS09943.5prime Sequence
429 bp (428 high quality bases) assembled on 2006-04-19
> BS09943.5prime
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACATAAAAGCTTTCTAGACC
BS09943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30282-PA | 399 | CG30282-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 14:19:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21489428..21489828 | 417..17 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:19:20 has no hits.
BS09943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:32 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30282-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:43 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30282-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:36 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489423..21489835 | 11..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:36 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489423..21489835 | 11..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:35 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376928..17377340 | 11..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:35 Download gff for
BS09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376928..17377340 | 11..422 | 98 | | Minus |
BS09943.complete Sequence
431 bp (431 high quality bases) assembled on 2006-03-25
> BS09943.complete
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACATAAAAGCTTTCTAGACCAT
BS09943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:07:49 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 20:07:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21489428..21489828 | 417..17 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:48 has no hits.
BS09943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:45 Download gff for
BS09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H-RA | 138..159 | 159..180 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:50:45 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:28 Download gff for
BS09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489432..21489828 | 17..413 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:28 Download gff for
BS09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21489432..21489828 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:35 Download gff for
BS09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376937..17377333 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:35 Download gff for
BS09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17376937..17377333 | 17..413 | 100 | | Minus |
BS09943.pep Sequence
Translation from 16 to 414
> BS09943.pep
MPRNPWKTKPKHTQDMRNLKWVGKGGGGTNFLRFFIPSGDLHLSERRATK
TATTTLWLRSSVTLNRSECECSFFFLFCGPVGWIIQRQSAEPLAAPPLAT
CHLPHHGCDLNWNLKQQPAHVKMFCKMPKRCT*
Sequence BS09943.pep has no blast hits.