Clone BS09943 Report

Search the DGRC for BS09943

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS09943.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS09943.3prime Sequence

429 bp (428 high quality bases) assembled on 2006-04-19

> BS09943.3prime
ATGGTCTAGAAAGCTTTTATGTGCATCTCTTGGGCATTTTGCAAAACATT
TTTACATGCGCCGGCTGTTGTTTCAAATTCCAGTTCAAGTCACAACCATG
ATGGGGCAAGTGGCAAGTGGCAAGTGGAGGTGCGGCAAGTGGCTCGGCGG
ATTGCCGCTGAATAATCCACCCAACCGGGCCGCAAAAAAGAAAAAAAAAC
GAACATTCACATTCAGAGCGGTTAAGTGTTACGCTGGAGCGTAACCAAAG
TGTCGTCGTTGCTGTTTTTGTCGCCCGCCTTTCGCTCAAGTGCAAATCTC
CAGATGGAATAAAAAAGCGTAAAAAATTTGTACCACCACCCCCCTTCCCA
ACCCACTTGAGATTCCGCATGTCCTGTGTGTGTTTCGGTTTGGTTTTCCA
GGGATTACGCGGCATGTCGACTGATAACT

BS09943.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30282-PA 399 CG30282-RA 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 02:26:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489428..21489828 15..415 2005 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:26:29 has no hits.

BS09943.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:31 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..415 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:41 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..415 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:37 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489423..21489835 10..421 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:37 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489423..21489835 10..421 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:26 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376928..17377340 10..421 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:26 Download gff for BS09943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376928..17377340 10..421 98   Plus

BS09943.5prime Sequence

429 bp (428 high quality bases) assembled on 2006-04-19

> BS09943.5prime
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACATAAAAGCTTTCTAGACC

BS09943.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30282-PA 399 CG30282-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 14:19:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489428..21489828 417..17 2005 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:19:20 has no hits.

BS09943.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:32 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:43 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:36 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489423..21489835 11..422 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:36 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489423..21489835 11..422 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:35 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376928..17377340 11..422 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:35 Download gff for BS09943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376928..17377340 11..422 98   Minus

BS09943.complete Sequence

431 bp (431 high quality bases) assembled on 2006-03-25

> BS09943.complete
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACATAAAAGCTTTCTAGACCAT

BS09943.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:07:49 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 20:07:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489428..21489828 417..17 2005 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:07:48 has no hits.

BS09943.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:45 Download gff for BS09943.complete
Subject Subject Range Query Range Percent Splice Strand
H-RA 138..159 159..180 95   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:50:45 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:28 Download gff for BS09943.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21489432..21489828 17..413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:28 Download gff for BS09943.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21489432..21489828 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:35 Download gff for BS09943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376937..17377333 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:35 Download gff for BS09943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376937..17377333 17..413 100   Minus

BS09943.pep Sequence

Translation from 16 to 414

> BS09943.pep
MPRNPWKTKPKHTQDMRNLKWVGKGGGGTNFLRFFIPSGDLHLSERRATK
TATTTLWLRSSVTLNRSECECSFFFLFCGPVGWIIQRQSAEPLAAPPLAT
CHLPHHGCDLNWNLKQQPAHVKMFCKMPKRCT*
Sequence BS09943.pep has no blast hits.