Clone Sequence Records
BS09946.3prime Sequence
863 bp (774 high quality bases) assembled on 2006-04-19
> BS09946.3prime
ATGGTCTAGAAAGCTTTTACATGAAATAACTGCTAACATATGAGGCCGCT
AAGATGCCCAGCACAGTGAGGCAGATCAGTATCATGATCTTCTTTCGTCG
GGCTTTACTCTGGTACTTGAGCGCCTTCTTGGTGTCCTGAGTTGCCGTCT
GCACATAGTCCATAGCGTGCTCCACATGGTACTCAATGCGATCGATCATC
TCGCCCTGCGACTCCACCAGCATGGCCATGTCCATGAACATGTCGTGCAG
CTCCTTGATCGATGTCTCCAGCTTCATGATGTCCTGGTGGCGGGCCTCAA
TGTCCGCCAGCGTCTGTTTGGCCTGCTGCGTCTCCATGATGATGCCCTGC
GTGAACACAGACGAGTTGCCCTCCTCCAGCATCTTCTCCAGCTCATCGTC
GTTGGTCGGTCGTCCGGTAATCTCCAGTTGACGCTGTATCCTTCCCTTGC
AGCGCTCTCGGTAGTCGGTCTGCGTGCGATTGTACTCGGTCATCACTTCG
ACGAATTTCCGTGACAACGTCGAGTGCTGCGTCTTCCGAATTCTCAGATC
CGCCGACGACTTATTCTGCTGCTCTTCCTGCTCGATGTTCTGCTCGATGC
CCTTGAGCTTGCCGCGAACGCGATTGGCATTCTTCTTGATGTCGGCCATC
AGATCCTCCAGCTCTTGCTTGGTCTTCTCGTCCGTTTGTGGGGCGGACAG
GATGGCCGAGTGCTTCTTCTTTACCTCCTCGACGTTATCCTGCACCTTGT
CGATCATCCCGCGGATCTCCTCCACCTGGGCGAAGAAGTCGTCCATGTAG
GAATCATGGCCATCCACATTGACGGCCACCTCCGTCTCCTCCTCGTCATC
GGATTGGGCGGCA
BS09946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31136-PA | 876 | Syx1A-RA | 30..876 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 2385 | CG31136-RA | 1350..2197 | 863..16 | 4240 | 100 | Minus |
Syx1A-RB | 2639 | CG31136-RB | 1350..2192 | 863..21 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103567..24104414 | 16..863 | 4240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 15:36:54 has no hits.
BS09946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:37 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-PA | 31..876 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:50 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31136-PA | 31..876 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:20:10 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1351..2200 | 12..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:47:54 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1351..2200 | 12..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:47:54 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103564..24104413 | 12..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:20:10 Download gff for
BS09946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929286..19930135 | 12..862 | 99 | | Plus |
BS09946.5prime Sequence
906 bp (780 high quality bases) assembled on 2006-04-19
> BS09946.5prime
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCANGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGTAAAAGCTTTC
TAGACC
BS09946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31136-PA | 876 | Syx1A-RA | 1..876 | 17..892 | 4361 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 2385 | CG31136-RA | 1321..2197 | 17..893 | 4374 | 99.9 | Plus |
Syx1A-RB | 2639 | CG31136-RB | 1321..2192 | 17..888 | 4349 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103567..24104443 | 893..17 | 4374 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:33:31 has no hits.
BS09946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:38 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:52 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31136-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:22:40 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2200 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:07:16 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2200 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:07:16 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103564..24104443 | 17..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:22:40 Download gff for
BS09946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929286..19930165 | 17..897 | 99 | | Minus |
BS09946.complete Sequence
908 bp (908 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636509
> BS09946.complete
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCAGGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGTAAAAGCTTTC
TAGACCAT
BS09946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 876 | CG31136-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Syx1A-RB | 891 | CG31136-PB | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 2385 | CG31136-RA | 1321..2197 | 17..893 | 4385 | 100 | Plus |
Syx1A-RB | 2639 | CG31136-RB | 1321..2192 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103567..24104443 | 893..17 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:43 has no hits.
BS09946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:49 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:38 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1301..2180 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:21 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2194 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:49 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1301..2180 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:09 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2194 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:09 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103570..24104443 | 17..890 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:21 Download gff for
BS09946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929292..19930165 | 17..890 | 100 | | Minus |
BS09946.pep Sequence
Translation from 16 to 891
> BS09946.pep
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*
BS09946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-PA | 291 | CG31136-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
Syx1A-PB | 296 | CG31136-PB | 1..291 | 1..291 | 1458 | 99.7 | Plus |
Syx4-PA | 333 | CG2715-PA | 65..322 | 14..278 | 267 | 23.4 | Plus |
Syx4-PB | 257 | CG2715-PB | 4..246 | 29..278 | 265 | 24 | Plus |
Syx7-PB | 282 | CG5081-PB | 22..267 | 35..283 | 161 | 23.1 | Plus |