Clone BS09946 Report

Search the DGRC for BS09946

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptSyx1A-RA
Protein status:BS09946.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09946.3prime Sequence

863 bp (774 high quality bases) assembled on 2006-04-19

> BS09946.3prime
ATGGTCTAGAAAGCTTTTACATGAAATAACTGCTAACATATGAGGCCGCT
AAGATGCCCAGCACAGTGAGGCAGATCAGTATCATGATCTTCTTTCGTCG
GGCTTTACTCTGGTACTTGAGCGCCTTCTTGGTGTCCTGAGTTGCCGTCT
GCACATAGTCCATAGCGTGCTCCACATGGTACTCAATGCGATCGATCATC
TCGCCCTGCGACTCCACCAGCATGGCCATGTCCATGAACATGTCGTGCAG
CTCCTTGATCGATGTCTCCAGCTTCATGATGTCCTGGTGGCGGGCCTCAA
TGTCCGCCAGCGTCTGTTTGGCCTGCTGCGTCTCCATGATGATGCCCTGC
GTGAACACAGACGAGTTGCCCTCCTCCAGCATCTTCTCCAGCTCATCGTC
GTTGGTCGGTCGTCCGGTAATCTCCAGTTGACGCTGTATCCTTCCCTTGC
AGCGCTCTCGGTAGTCGGTCTGCGTGCGATTGTACTCGGTCATCACTTCG
ACGAATTTCCGTGACAACGTCGAGTGCTGCGTCTTCCGAATTCTCAGATC
CGCCGACGACTTATTCTGCTGCTCTTCCTGCTCGATGTTCTGCTCGATGC
CCTTGAGCTTGCCGCGAACGCGATTGGCATTCTTCTTGATGTCGGCCATC
AGATCCTCCAGCTCTTGCTTGGTCTTCTCGTCCGTTTGTGGGGCGGACAG
GATGGCCGAGTGCTTCTTCTTTACCTCCTCGACGTTATCCTGCACCTTGT
CGATCATCCCGCGGATCTCCTCCACCTGGGCGAAGAAGTCGTCCATGTAG
GAATCATGGCCATCCACATTGACGGCCACCTCCGTCTCCTCCTCGTCATC
GGATTGGGCGGCA

BS09946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31136-PA 876 Syx1A-RA 30..876 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2385 CG31136-RA 1350..2197 863..16 4240 100 Minus
Syx1A-RB 2639 CG31136-RB 1350..2192 863..21 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103567..24104414 16..863 4240 100 Plus
Blast to na_te.dros performed on 2015-02-03 15:36:54 has no hits.

BS09946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:37 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-PA 31..876 17..862 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:50 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31136-PA 31..876 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:20:10 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1351..2200 12..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:47:54 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1351..2200 12..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:47:54 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24103564..24104413 12..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:20:10 Download gff for BS09946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929286..19930135 12..862 99   Plus

BS09946.5prime Sequence

906 bp (780 high quality bases) assembled on 2006-04-19

> BS09946.5prime
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCANGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGTAAAAGCTTTC
TAGACC

BS09946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31136-PA 876 Syx1A-RA 1..876 17..892 4361 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2385 CG31136-RA 1321..2197 17..893 4374 99.9 Plus
Syx1A-RB 2639 CG31136-RB 1321..2192 17..888 4349 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103567..24104443 893..17 4374 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 23:33:31 has no hits.

BS09946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:38 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:52 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31136-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:22:40 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2200 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:07:16 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2200 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:07:16 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24103564..24104443 17..897 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:22:40 Download gff for BS09946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929286..19930165 17..897 99   Minus

BS09946.complete Sequence

908 bp (908 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636509

> BS09946.complete
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCAGGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGTAAAAGCTTTC
TAGACCAT

BS09946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 876 CG31136-PA 1..876 17..892 4380 100 Plus
Syx1A-RB 891 CG31136-PB 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2385 CG31136-RA 1321..2197 17..893 4385 100 Plus
Syx1A-RB 2639 CG31136-RB 1321..2192 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103567..24104443 893..17 4385 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:17:43 has no hits.

BS09946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:49 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:38 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1301..2180 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:21 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2194 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:49 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1301..2180 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:09 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2194 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:09 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24103570..24104443 17..890 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:21 Download gff for BS09946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929292..19930165 17..890 100   Minus

BS09946.pep Sequence

Translation from 16 to 891

> BS09946.pep
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*

BS09946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-PA 291 CG31136-PA 1..291 1..291 1462 100 Plus
Syx1A-PB 296 CG31136-PB 1..291 1..291 1458 99.7 Plus
Syx4-PA 333 CG2715-PA 65..322 14..278 267 23.4 Plus
Syx4-PB 257 CG2715-PB 4..246 29..278 265 24 Plus
Syx7-PB 282 CG5081-PB 22..267 35..283 161 23.1 Plus