Clone Sequence Records
BS09950.3prime Sequence
958 bp (849 high quality bases) assembled on 2006-04-19
> BS09950.3prime
ATGGTCTAGAAAGCTTCTAGACGGCGGCACGCTTGGCCGGCGAGCACAGG
GCCTCAGCCTCCGAGCTGGGATCCTCCGGCTTCTTGCGCTTGATCAAATG
TGTGATGTCTGTGGGCTTGGCCGAACTGCTGCTAATGGTCGATGAGGAGG
CCGCCGCAGCACCTTTGGAGGAGGACGACGAAGAGCTGGCGGCTCCATTG
GCTGACGACGACGACGAGGAGGAGGCAGCAGCTGCATCACCACTGCTCAT
TGGCTTGATGTAGCTATCCAGGGCAGCTCGCACTTCAGCAATGGTCTGGG
CCTGCATCTCTTCGATTTCCTGGATCTTGGCCAAAATCTCCTGCTTAGTT
TCCTCCAAATCCAACATATTGTTTCTGTCGCGCTCGCTAGGTTCGTCCTT
GCCCTTAATCTCGGCGATTTCCTCCTCGATCAACACGCTTGATTGACGCA
GTGCTGTCGCTCCTTCCTTGTTGAGTTGCTGCATCAAATAGGTCAGCCCG
ATCTTGTAATGCAACTCGGCCAAAGCACGTCGGTTTCTTGTGGGCAGCTC
TCCGTGGATCTTCAGTGCTTTCTCATAATCTTCGCGTGCCGCCTCTAGTA
TTCCATTCTCAAACTCAATGTTAGCCAGCTCAGTCTGAACCTCAGCCAAG
TAGGGGAGTCCACTGAGCCCTTGGCGCGAGAAGATCTGAGCAGCCGCCTC
TAGAATTTCCCAGGCCAACTGCAAACTTCCGCTAACTCCTTCCTCTTCTT
CGGGTTCTTCCTCTACAGCAGGTGCTGCACCATTGGAACAACTAGCTGTG
ACCTCACCATTCGATGTGCTCGGTCGCTCGTCATCGTTGACGGCAGCTCC
GCCACCGCCATTGCTGCTGCTGACCTCATCCACGCGGGTCGGTACCTTCT
TAGAGGGCTTTTCATCACTTTGAGCTTGCTCGGCTTCCCCGGTAGAGTCT
GCCTCCTC
BS09950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PA | 1479 | CG8223-RA | 541..1479 | 955..17 | 4670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 1010..1948 | 955..17 | 4680 | 99.9 | Minus |
CG8223-RA | 1999 | CG8223-RA | 756..1694 | 955..17 | 4680 | 99.9 | Minus |
CG34135-RC | 7398 | CG34135-RC | 3552..3933 | 574..955 | 1895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752737..8753118 | 955..574 | 1895 | 99.7 | Minus |
3R | 32079331 | 3R | 8753519..8753799 | 297..17 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 8753180..8753458 | 574..296 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:53:03 has no hits.
BS09950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:41 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 538..1479 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:57 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 538..1479 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:10 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 753..1694 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:26 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 753..1694 | 17..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:26 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8752734..8753118 | 574..958 | 99 | -> | Minus |
3R | 8753181..8753458 | 296..573 | 100 | -> | Minus |
3R | 8753521..8753799 | 17..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:10 Download gff for
BS09950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4578456..4578840 | 574..958 | 99 | -> | Minus |
arm_3R | 4578903..4579180 | 296..573 | 100 | -> | Minus |
arm_3R | 4579243..4579521 | 17..295 | 100 | | Minus |
BS09950.5prime Sequence
927 bp (764 high quality bases) assembled on 2006-04-19
> BS09950.5prime
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GNGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACG
BS09950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PA | 1479 | CG8223-RA | 1..911 | 17..927 | 4536 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 470..1380 | 17..927 | 4544 | 99.9 | Plus |
CG8223-RA | 1999 | CG8223-RA | 216..1126 | 17..927 | 4544 | 99.9 | Plus |
CG34135-RC | 7398 | CG34135-RC | 3563..4156 | 927..334 | 2959 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752514..8753107 | 334..927 | 2959 | 99.8 | Plus |
3R | 32079331 | 3R | 8752082..8752398 | 17..333 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:25:38 has no hits.
BS09950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:43 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:58 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:46 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 203..1126 | 5..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:10 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 203..1126 | 5..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:10 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8752069..8752398 | 5..333 | 98 | -> | Plus |
3R | 8752514..8753107 | 334..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:46 Download gff for
BS09950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4577791..4578120 | 5..333 | 98 | -> | Plus |
arm_3R | 4578236..4578829 | 334..927 | 99 | | Plus |
BS09950.complete Sequence
1511 bp (1511 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636510
> BS09950.complete
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GGGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGA
AGATCCACGGAGAGCTGCCCACAAGAAACCGACGTGCTTTGGCCGAGTTG
CATTACAAGATCGGGCTGACCTATTTGATGCAGCAACTCAACAAGGAAGG
AGCGACAGCACTGCGTCAATCAAGCGTGTTGATCGAGGAGGAAATCGCCG
AGATTAAGGGCAAGGACGAACCTAGCGAGCGCGACAGAAACAATATGTTG
GATTTGGAGGAAACTAAGCAGGAGATTTTGGCCAAGATCCAGGAAATCGA
AGAGATGCAGGCCCAGACCATTGCTGAAGTGCGAGCTGCCCTGGATAGCT
ACATCAAGCCAATGAGCAGTGGTGATGCAGCTGCTGCCTCCTCCTCGTCG
TCGTCGTCAGCCAATGGAGCCGCCAGCTCTTCGTCGTCCTCCTCCAAAGG
TGCTGCGGCGGCCTCCTCATCGACCATTAGCAGCAGTTCGGCCAAGCCCA
CAGACATCACACATTTGATCAAGCGCAAGAAGCCGGAGGATCCCAGCTCG
GAGGCTGAGGCCCTGTGCTCGCCGGCCAAGCGTGCCGCCGTCTAGAAGCT
TTCTAGACCAT
BS09950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 1479 | CG8223-PB | 1..1479 | 17..1495 | 7395 | 100 | Plus |
CG8223-RA | 1479 | CG8223-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 470..1948 | 17..1495 | 7395 | 100 | Plus |
CG8223-RA | 1999 | CG8223-RA | 216..1694 | 17..1495 | 7395 | 100 | Plus |
CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 938..334 | 3025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752514..8753118 | 334..938 | 3025 | 100 | Plus |
3R | 32079331 | 3R | 8752082..8752398 | 17..333 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 8753519..8753799 | 1215..1495 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 8753180..8753458 | 938..1216 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:25:00 has no hits.
BS09950.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:50 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 1..1479 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:40 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 195..1686 | 5..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:13 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 216..1694 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:50 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 195..1686 | 5..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:58 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 216..1694 | 17..1495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:58 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8752082..8752398 | 17..333 | 100 | -> | Plus |
3R | 8752514..8753118 | 334..938 | 100 | -> | Plus |
3R | 8753181..8753458 | 939..1216 | 100 | -> | Plus |
3R | 8753521..8753799 | 1217..1495 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:13 Download gff for
BS09950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4577804..4578120 | 17..333 | 100 | -> | Plus |
arm_3R | 4578236..4578840 | 334..938 | 100 | -> | Plus |
arm_3R | 4578903..4579180 | 939..1216 | 100 | -> | Plus |
arm_3R | 4579243..4579521 | 1217..1495 | 100 | | Plus |
BS09950.pep Sequence
Translation from 16 to 1494
> BS09950.pep
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAV*
BS09950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PB | 492 | CG8223-PB | 1..492 | 1..492 | 2415 | 100 | Plus |
CG8223-PA | 492 | CG8223-PA | 1..492 | 1..492 | 2415 | 100 | Plus |
tn-PC | 1517 | CG15105-PC | 490..817 | 140..473 | 166 | 23.9 | Plus |