Clone BS09950 Report

Search the DGRC for BS09950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG8223-RA
Protein status:BS09950.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09950.3prime Sequence

958 bp (849 high quality bases) assembled on 2006-04-19

> BS09950.3prime
ATGGTCTAGAAAGCTTCTAGACGGCGGCACGCTTGGCCGGCGAGCACAGG
GCCTCAGCCTCCGAGCTGGGATCCTCCGGCTTCTTGCGCTTGATCAAATG
TGTGATGTCTGTGGGCTTGGCCGAACTGCTGCTAATGGTCGATGAGGAGG
CCGCCGCAGCACCTTTGGAGGAGGACGACGAAGAGCTGGCGGCTCCATTG
GCTGACGACGACGACGAGGAGGAGGCAGCAGCTGCATCACCACTGCTCAT
TGGCTTGATGTAGCTATCCAGGGCAGCTCGCACTTCAGCAATGGTCTGGG
CCTGCATCTCTTCGATTTCCTGGATCTTGGCCAAAATCTCCTGCTTAGTT
TCCTCCAAATCCAACATATTGTTTCTGTCGCGCTCGCTAGGTTCGTCCTT
GCCCTTAATCTCGGCGATTTCCTCCTCGATCAACACGCTTGATTGACGCA
GTGCTGTCGCTCCTTCCTTGTTGAGTTGCTGCATCAAATAGGTCAGCCCG
ATCTTGTAATGCAACTCGGCCAAAGCACGTCGGTTTCTTGTGGGCAGCTC
TCCGTGGATCTTCAGTGCTTTCTCATAATCTTCGCGTGCCGCCTCTAGTA
TTCCATTCTCAAACTCAATGTTAGCCAGCTCAGTCTGAACCTCAGCCAAG
TAGGGGAGTCCACTGAGCCCTTGGCGCGAGAAGATCTGAGCAGCCGCCTC
TAGAATTTCCCAGGCCAACTGCAAACTTCCGCTAACTCCTTCCTCTTCTT
CGGGTTCTTCCTCTACAGCAGGTGCTGCACCATTGGAACAACTAGCTGTG
ACCTCACCATTCGATGTGCTCGGTCGCTCGTCATCGTTGACGGCAGCTCC
GCCACCGCCATTGCTGCTGCTGACCTCATCCACGCGGGTCGGTACCTTCT
TAGAGGGCTTTTCATCACTTTGAGCTTGCTCGGCTTCCCCGGTAGAGTCT
GCCTCCTC

BS09950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PA 1479 CG8223-RA 541..1479 955..17 4670 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 1010..1948 955..17 4680 99.9 Minus
CG8223-RA 1999 CG8223-RA 756..1694 955..17 4680 99.9 Minus
CG34135-RC 7398 CG34135-RC 3552..3933 574..955 1895 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752737..8753118 955..574 1895 99.7 Minus
3R 32079331 3R 8753519..8753799 297..17 1405 100 Minus
3R 32079331 3R 8753180..8753458 574..296 1395 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:53:03 has no hits.

BS09950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:41 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 538..1479 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:57 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 538..1479 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:10 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 753..1694 17..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:26 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 753..1694 17..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:26 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8752734..8753118 574..958 99 -> Minus
3R 8753181..8753458 296..573 100 -> Minus
3R 8753521..8753799 17..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:10 Download gff for BS09950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4578456..4578840 574..958 99 -> Minus
arm_3R 4578903..4579180 296..573 100 -> Minus
arm_3R 4579243..4579521 17..295 100   Minus

BS09950.5prime Sequence

927 bp (764 high quality bases) assembled on 2006-04-19

> BS09950.5prime
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GNGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACG

BS09950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PA 1479 CG8223-RA 1..911 17..927 4536 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 470..1380 17..927 4544 99.9 Plus
CG8223-RA 1999 CG8223-RA 216..1126 17..927 4544 99.9 Plus
CG34135-RC 7398 CG34135-RC 3563..4156 927..334 2959 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752514..8753107 334..927 2959 99.8 Plus
3R 32079331 3R 8752082..8752398 17..333 1585 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:25:38 has no hits.

BS09950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:43 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:39:58 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:46 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 203..1126 5..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:10 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 203..1126 5..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:10 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8752069..8752398 5..333 98 -> Plus
3R 8752514..8753107 334..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:46 Download gff for BS09950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4577791..4578120 5..333 98 -> Plus
arm_3R 4578236..4578829 334..927 99   Plus

BS09950.complete Sequence

1511 bp (1511 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636510

> BS09950.complete
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GGGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGA
AGATCCACGGAGAGCTGCCCACAAGAAACCGACGTGCTTTGGCCGAGTTG
CATTACAAGATCGGGCTGACCTATTTGATGCAGCAACTCAACAAGGAAGG
AGCGACAGCACTGCGTCAATCAAGCGTGTTGATCGAGGAGGAAATCGCCG
AGATTAAGGGCAAGGACGAACCTAGCGAGCGCGACAGAAACAATATGTTG
GATTTGGAGGAAACTAAGCAGGAGATTTTGGCCAAGATCCAGGAAATCGA
AGAGATGCAGGCCCAGACCATTGCTGAAGTGCGAGCTGCCCTGGATAGCT
ACATCAAGCCAATGAGCAGTGGTGATGCAGCTGCTGCCTCCTCCTCGTCG
TCGTCGTCAGCCAATGGAGCCGCCAGCTCTTCGTCGTCCTCCTCCAAAGG
TGCTGCGGCGGCCTCCTCATCGACCATTAGCAGCAGTTCGGCCAAGCCCA
CAGACATCACACATTTGATCAAGCGCAAGAAGCCGGAGGATCCCAGCTCG
GAGGCTGAGGCCCTGTGCTCGCCGGCCAAGCGTGCCGCCGTCTAGAAGCT
TTCTAGACCAT

BS09950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 1479 CG8223-PB 1..1479 17..1495 7395 100 Plus
CG8223-RA 1479 CG8223-PA 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 470..1948 17..1495 7395 100 Plus
CG8223-RA 1999 CG8223-RA 216..1694 17..1495 7395 100 Plus
CG34135-RC 7398 CG34135-RC 3552..4156 938..334 3025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752514..8753118 334..938 3025 100 Plus
3R 32079331 3R 8752082..8752398 17..333 1585 100 Plus
3R 32079331 3R 8753519..8753799 1215..1495 1405 100 Plus
3R 32079331 3R 8753180..8753458 938..1216 1395 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:25:00 has no hits.

BS09950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:50 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:40 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 195..1686 5..1495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:13 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 216..1694 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:50 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 195..1686 5..1495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:58 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 216..1694 17..1495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:58 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8752082..8752398 17..333 100 -> Plus
3R 8752514..8753118 334..938 100 -> Plus
3R 8753181..8753458 939..1216 100 -> Plus
3R 8753521..8753799 1217..1495 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:13 Download gff for BS09950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4577804..4578120 17..333 100 -> Plus
arm_3R 4578236..4578840 334..938 100 -> Plus
arm_3R 4578903..4579180 939..1216 100 -> Plus
arm_3R 4579243..4579521 1217..1495 100   Plus

BS09950.pep Sequence

Translation from 16 to 1494

> BS09950.pep
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAV*

BS09950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PB 492 CG8223-PB 1..492 1..492 2415 100 Plus
CG8223-PA 492 CG8223-PA 1..492 1..492 2415 100 Plus
tn-PC 1517 CG15105-PC 490..817 140..473 166 23.9 Plus