Clone BS09953 Report

Search the DGRC for BS09953

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptmio-RA
Protein status:BS09953.pep: full length peptide match
Sequenced Size:2636

Clone Sequence Records

BS09953.3prime Sequence

897 bp (830 high quality bases) assembled on 2006-04-19

> BS09953.3prime
ATGGTCTAGAAAGCTTCTAGGAAATGTCTCTCAATGTGTTCGGCTTGGTG
CCGTCCATGTCGAAGCAGCGGCAGTTGCACGACGACACGGGGCACTCTGA
ATTTTGCTTGAACCACTGCATGATGTGCTCGGTGTGTCCGCCGTGGCGAC
AGGTCTGACACCAGGAAAACCACTTTGAGAAGGGCTTGGTCTGCCAGCCG
GGCACGTCGGGCGTGGTGGTCGGGGTCTCCCCATTGCTCATGTTCACCAT
TGTGCCCATGTGCATTAGGCAGAGCGAGCAGCGGGGCAGGGGTTTCCGGC
AGCTGGGGCATGAGGAGAGCCTGTTGGTGCTGGTGGTGGTGCTCCGTGGA
CGCGGCTCGTCCAGCAAGGCGTTGGACACAGACTTGCCGCAAAAGTTGCA
CGACAGAAATACGGTGCGGGAACTGCGGGAGGATGGGCGGATGCTCTCGA
TCTTGATGTCCAGCTCGGCCCGCTTCTCCCACAAGCCCCAGCTATTGAGG
TGATCCAAGTAGCTGGCGATCCAGTACTGGATGCGCTTGTCCTCGAAAAG
CTCTTGCCGGAAGTAGTTAATGGCCACCAGGGCTACCGTCTGCACATCGA
AGCTGGTGTCCATATAGGACTGCAGTATATCGATTCCGTCCTGCGACTCT
CCAGTGAGCAACAAGCCATTTAGATCGCCACCATCTATGGCCGCCTGGAT
TTGCTGCGCAACATAGTCAGCCAGCTTGGTCTCCGATAGATATTTGCAGG
CGAAGGCCATGCGGTCTGATAACGAAACGCCTTCCTCTTTGAGCACTGCA
TCAAAATTGTCCTTCTCCATCGTTAGAAAGGAGAAGACAGCCCTTAAGTG
TGGATCGTGTATCTGCATGTTGGCGCTGGATCGCTGATTCCGCACGT

BS09953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7074-PA 2604 mio-RA 1728..2604 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 2956 CG7074-RA 1865..2741 893..17 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2219775..2220259 591..107 2425 100 Minus
2L 23513712 2L 2219413..2219716 893..590 1520 100 Minus
2L 23513712 2L 2220320..2220410 107..17 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:41:06 has no hits.

BS09953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:49 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
mio-PA 1723..2604 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:05 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7074-PA 1723..2604 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:17:07 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1860..2746 9..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:03 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1860..2746 9..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:03 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2219408..2219716 590..897 99 -> Minus
2L 2219777..2220258 108..589 100 -> Minus
2L 2220320..2220415 9..107 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:17:07 Download gff for BS09953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2219408..2219716 590..897 99 -> Minus
arm_2L 2219777..2220258 108..589 100 -> Minus
arm_2L 2220320..2220415 9..107 95   Minus

BS09953.5prime Sequence

912 bp (829 high quality bases) assembled on 2006-04-19

> BS09953.5prime
GAAGTTATCAGTCGACATGAGCGGCAATACTCACGGACTCAGCTGGTTTC
CACATTTTCCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATAC
GAAGTGCGCCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATAT
ATCCGTGAACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCG
TGGCCGCCTCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCG
GATGGCAAAGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTG
GGAGTACACACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACG
AGCTGGATGCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGAC
ACCTGCATCACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGC
CAACTTCTTCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAA
ATCATCGCACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTC
GATCTGAGGCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGT
GCAGGGACTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGG
ACTCGGTGATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGG
CAGATTCAGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAG
GACAAGCCTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCT
ACGACATCCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTA
AAACGACAGATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTT
TTCGTTTGTTAA

BS09953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7074-PA 2604 mio-RA 1..896 17..912 4455 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 2956 CG7074-RA 138..1033 17..912 4465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2218174..2218525 561..912 1760 100 Plus
2L 23513712 2L 2217830..2218081 309..560 1260 100 Plus
2L 23513712 2L 2217598..2217771 135..308 870 100 Plus
2L 23513712 2L 2217427..2217546 17..136 585 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 11:11:34 has no hits.

BS09953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:24:50 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:07 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7074-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:39 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 128..1033 7..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:01 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 128..1033 7..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:01 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2217598..2217771 135..308 100 -> Plus
2L 2217830..2218081 309..560 100 -> Plus
2L 2218174..2218525 561..912 100   Plus
2L 2217417..2217544 7..134 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:39 Download gff for BS09953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2218174..2218525 561..912 100   Plus
arm_2L 2217417..2217544 7..134 96 -> Plus
arm_2L 2217598..2217771 135..308 100 -> Plus
arm_2L 2217830..2218081 309..560 100 -> Plus

BS09953.complete Sequence

2636 bp assembled on 2010-05-10

GenBank Submission: KX806325

> BS09953.complete
GAAGTTATCAGTCGACATGAGCGGCAATACTCACGGACTCAGCTGGTTTC
CACATTTTCCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATAC
GAAGTGCGCCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATAT
ATCCGTGAACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCG
TGGCCGCCTCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCG
GATGGCAAAGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTG
GGAGTACACACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACG
AGCTGGATGCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGAC
ACCTGCATCACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGC
CAACTTCTTCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAA
ATCATCGCACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTC
GATCTGAGGCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGT
GCAGGGACTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGG
ACTCGGTGATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGG
CAGATTCAGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAG
GACAAGCCTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCT
ACGACATCCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTA
AAACGACAGATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTT
TTCGTTTGTTAATTGCCTGTCGTGGCATTCGAGGGATTTCGAGAGAGCTC
TGCTTTTGGCAGATGCGCTGAACATCCTGGACTTTCGACTGCCAGCCACC
TTGCACACGGCGCACAGCAATCGCCGGAAATTGCCACTTCTGATGCAGCG
TCCGCTCTACACACCCGCCTCGCCGACTTCCACTGCGGCCACGCCCACTC
AGCAGCAGCCCACGAGCAGCTGCAGCACGAATAGCGGGAGTTCCCTGGAC
TTTAGCACTCCTGGTGGTTCGCCCTTCAATGTGGACCTGCTGAAACCGGA
ACTCTTTGAGCTGGATCTGGTGGACGAGACGCGTCAGCGCGCTCTAGAGG
ATTACGGCATCAAACCCGATAACAAGCGATTCGGCGAACTCCACTTGACA
CCGTATCTGCGAAATGTGTGGTCCACTTTGAACAATGTCTACAGCGAGGA
TCGACTGACGGGCTTAAAGGCCACTTTGGGCATTAACTTGGGACACACCT
CGGAGGCCTTGATGGCCAGCTCCCGCATTGAATCTCAGGTGCTCCAGTGG
CCAGAGGGCATCAACAACTCCAACAAACTGATATGCTACAGGAGTGAGCA
GCGCGACCTGGCCCTCCAACTTTGCGGTTGGGCCTTTGAGCAGGAGCTGG
ATCGCTTTATAGACCAGTTGTATGCAAACAAGGAGTACAGCCGGGCAGCC
ATGATCTGCGTGTTCCACTTGAAAATTTTCCATGCCTGCAACATCCTATC
GTCGGCGGCGGACAACATGAGGGATCCCAGCATGTACAGGATCACCGTCA
TCGCCTTGTCCAGTTTCAATGCAGATCGCTGCAGTTCCACGTGGCGGAAT
CAGCGATCCAGCGCCAACATGCAGATACACGATCCACACTTAAGGGCTGT
CTTCTCCTTTCTAACGATGGAGAAGGACAATTTTGATGCAGTGCTCAAAG
AGGAAGGCGTTTCGTTATCAGACCGCATGGCCTTCGCCTGCAAATATCTA
TCGGAGACCAAGCTGGCTGACTATGTTGCGCAGCAAATCCAGGCGGCCAT
AGATGGTGGCGATCTAAATGGCTTGTTGCTCACTGGAGAGTCGCAGGACG
GAATCGATATACTGCAGTCCTATATGGACACCAGCTTCGATGTGCAGACG
GTAGCCCTGGTGGCCATTAACTACTTCCGGCAAGAGCTTTTCGAGGACAA
GCGCATCCAGTACTGGATCGCCAGCTACTTGGATCACCTCAATAGCTGGG
GCTTGTGGGAGAAGCGGGCCGAGCTGGACATCAAGATCGAGAGCATCCGC
CCATCCTCCCGCAGTTCCCGCACCGTATTTCTGTCGTGCAACTTTTGCGG
CAAGTCTGTGTCCAACGCCTTGCTGGACGAGCCGCGTCCACGGAGCACCA
CCACCAGCACCAACAGGCTCTCCTCATGCCCCAGCTGCCGGAAACCCCTG
CCCCGCTGCTCGCTCTGCCTAATGCACATGGGCACAATGGTGAACATGAG
CAATGGGGAGACCCCGACCACCACGCCCGACGTGCCCGGCTGGCAGACCA
AGCCCTTCTCAAAGTGGTTTTCCTGGTGTCAGACCTGTCGCCACGGCGGA
CACACCGAGCACATCATGCAGTGGTTCAAGCAAAATTCAGAGTGCCCCGT
GTCGTCGTGCAACTGCCGCTGCTTCGACATGGACGGCACCAAGCCGAACA
CATTGAGAGACATTTCCTAGAAGCTTTCTAGACCAT

BS09953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 2604 CG7074-PA 1..2604 17..2620 13005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 2956 CG7074-RA 138..2741 17..2620 13005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2218174..2219105 561..1492 4660 100 Plus
2L 23513712 2L 2219158..2219716 1489..2047 2795 100 Plus
2L 23513712 2L 2219775..2220259 2046..2530 2425 100 Plus
2L 23513712 2L 2217830..2218081 309..560 1260 100 Plus
2L 23513712 2L 2217598..2217771 135..308 870 100 Plus
2L 23513712 2L 2217427..2217546 17..136 585 99.2 Plus
2L 23513712 2L 2220320..2220410 2530..2620 455 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:54:24 has no hits.

BS09953.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:16 Download gff for BS09953.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 65..2668 17..2620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:37 Download gff for BS09953.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 138..2741 17..2620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:09 Download gff for BS09953.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 138..2741 17..2620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:09 Download gff for BS09953.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2218174..2219104 561..1491 100 -> Plus
2L 2217427..2217544 17..134 99 -> Plus
2L 2217598..2217771 135..308 100 -> Plus
2L 2217830..2218081 309..560 100 -> Plus
2L 2219161..2219716 1492..2047 100 -> Plus
2L 2219777..2220258 2048..2529 100 -> Plus
2L 2220320..2220410 2530..2620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:37 Download gff for BS09953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2217598..2217771 135..308 100 -> Plus
arm_2L 2217427..2217544 17..134 99 -> Plus
arm_2L 2217830..2218081 309..560 100 -> Plus
arm_2L 2218174..2219104 561..1491 100 -> Plus
arm_2L 2219161..2219716 1492..2047 100 -> Plus
arm_2L 2219777..2220258 2048..2529 100 -> Plus
arm_2L 2220320..2220410 2530..2620 100   Plus

BS09953.pep Sequence

Translation from 16 to 2619

> BS09953.pep
MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYL
ANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPR
QQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGV
GESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSV
SPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLS
SLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNC
LSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTP
ASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELD
LVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGL
KATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLAL
QLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADN
MRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLT
MEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDL
NGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYW
IASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSN
ALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLMHMGTMVNMSNGETP
TTTPDVPGWQTKPFSKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNC
RCFDMDGTKPNTLRDIS*

BS09953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
mio-PA 867 CG7074-PA 1..867 1..867 4645 100 Plus