Clone Sequence Records
BS09964.3prime Sequence
926 bp (864 high quality bases) assembled on 2006-04-19
> BS09964.3prime
ATGGTCTAGAAAGCTTCTAGGTCTGCTCGTCCACTCGAGCTGGTGTTACC
GTAAATCTCTTGGAGCTCGCGACTTGGATGGCCGCATCCCTAGCTGGCTC
GTCCTTTCCCACTTGCGATGGCATGCTCGCGAATCGTGGACGTGGCTGTG
GAGGACTCAGCTGAACGGAGACCTCGTGGCTCCGTTGCGATGGTCTGCTT
ACTACGCTGTGGCGTTGGCGTCGTTCTACTGCTGGTGGATTAAACCCTAT
TCTCGACGCATACAATTGTTCCAGGCGATGGATGGTGGAGATGCCGGCGC
CAGGCGGTTGTGGCATTGAGAAACTATGTCGGTTGCTGAGCGGCGACCAA
GTGTGCTGGTAGTTTGATTCGTCCAGATGGCGCAGGAACTGACGATTGAT
GGAGCCCAGTGCGTGCTTGTCTTCGGTGGCCAGATTGGCTATTAGCTCGT
TGAGTATCTCCGACTCCGTTTCCACTTTGCCATTACGCGCCAGCTTTATG
TCGTGCTTCCAGAACTGTCGGTTTTTGCGCCCAATCACCGGGGCAATCTC
CTTTACCTTCAGCACCAGGATGCCCATGAGATAGACGCACAGAACGTTGG
ACAAAGTTAGGCACATGCTGATGCCGCCGAGCACGGCCAATTCAGTGGCC
TGGTTGTCCGAGTAGCGGCGCGATTTAATCACATCCACGTAGAGCGAATC
GTCGTTCTCGAATATCTTGTAAATGCAGGCCACCGCCCACAGCAGACCGG
AGTTAACCGCAGGCGGTAGCAGCGATGCCGATATGGCCACGCCAACCAGA
GAACCAATATTCCCGCCCAGGATTCCGATGGCAGCCGCCGCTCCCGACGG
TATGGCCGTGAATACCCCACGACGAGGGAGTGCAGATCGCAGCGGGATAG
CATCTCCTCCGTCAGTCCCTCACCAA
BS09964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-PA | 1818 | CG7384-RA | 966..1818 | 869..17 | 4265 | 100 | Minus |
CG7384-PA | 1818 | CG7384-RA | 908..965 | 926..869 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-RA | 2261 | CG7384-RA | 1123..2035 | 926..15 | 4540 | 99.9 | Minus |
CG12446-RA | 2644 | CG12446-RA | 1107..1300 | 920..728 | 225 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10508270..10509054 | 143..926 | 3875 | 99.9 | Plus |
2L | 23513712 | 2L | 10508085..10508212 | 15..142 | 640 | 100 | Plus |
X | 23542271 | X | 22810636..22810829 | 728..920 | 200 | 74.7 | Plus |
Blast to na_te.dros performed 2015-02-01 09:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 2162..2244 | 497..418 | 110 | 62.7 | Minus |
BS09964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:09 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-PA | 910..1818 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:34 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-PA | 910..1818 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:13 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 1125..2045 | 6..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:00 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 1125..2045 | 6..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:00 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10508075..10508212 | 6..142 | 97 | <- | Plus |
2L | 10508270..10509052 | 143..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:13 Download gff for
BS09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10508075..10508212 | 6..142 | 97 | <- | Plus |
arm_2L | 10508270..10509052 | 143..924 | 99 | | Plus |
BS09964.5prime Sequence
939 bp (821 high quality bases) assembled on 2006-04-19
> BS09964.5prime
GAAGTTATCAGTCGACATGACGGGTACAGCGGCTGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAGGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGAC
BS09964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-PA | 1818 | CG7384-RA | 1..923 | 17..939 | 4565 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-RA | 2261 | CG7384-RA | 216..1138 | 17..939 | 4585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10509706..10510238 | 549..17 | 2635 | 99.6 | Minus |
2L | 23513712 | 2L | 10509039..10509284 | 939..694 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 10509500..10509643 | 693..550 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:33:14 has no hits.
BS09964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:10 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:35 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:22:33 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 216..1138 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:20 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 216..1138 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:20 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10509039..10509284 | 694..939 | 100 | <- | Minus |
2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
2L | 10509706..10510238 | 17..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:22:33 Download gff for
BS09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10509039..10509284 | 694..939 | 100 | <- | Minus |
arm_2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
arm_2L | 10509706..10510238 | 17..549 | 99 | | Minus |
BS09964.complete Sequence
1850 bp assembled on 2010-04-27
GenBank Submission: KX801054
> BS09964.complete
GAAGTTATCAGTCGACATGACGGGTACAGCGGCTGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAGGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGACGGAGGAGATGC
TATCCCGCTGCGATCTGCACTCCCTCGTCGTTGGGGTATTCACGGCCATA
CCGTCGGGAGCGGCGGCTGCCATCGGAATCCTGGGCGGGAATATTGGTTC
TCTGGTTGGCGTGGCCATATCGGCATCGCTGCTACCGCCTGCGGTTAACT
CCGGTCTGCTGTGGGCGGTGGCCTGCATTTACAAGATATTCGAGAACGAC
GATTCGCTCTACGTGGATGTGATTAAATCGCGCCGCTACTCGGACAACCA
GGCCACTGAATTGGCCGTGCTCGGCGGCATCAGCATGTGCCTAACTTTGT
CCAACGTTCTGTGCGTCTATCTCATGGGCATCCTGGTGCTGAAGGTAAAG
GAGATTGCCCCGGTGATTGGGCGCAAAAACCGACAGTTCTGGAAGCACGA
CATAAAGCTGGCGCGTAATGGCAAAGTGGAAACGGAGTCGGAGATACTCA
ACGAGCTAATAGCCAATCTGGCCACCGAAGACAAGCACGCACTGGGCTCC
ATCAATCGTCAGTTCCTGCGCCATCTGGACGAATCAAACTACCAGCACAC
TTGGTCGCCGCTCAGCAACCGACATAGTTTCTCAATGCCACAACCGCCTG
GCGCCGGCATCTCCACCATCCATCGCCTGGAACAATTGTATGCGTCGAGA
ATAGGGTTTAATCCACCAGCAGTAGAACGACGCCAACGCCACAGCGTAGT
AAGCAGACCATCGCAACGGAGCCACGAGGTCTCCGTTCAGCTGAGTCCTC
CACAGCCACGTCCACGATTCGCGAGCATGCCATCGCAAGTGGGAAAGGAC
GAGCCAGCTAGGGATGCGGCCATCCAAGTCGCGAGCTCCAAGAGATTTAC
GGTAACACCAGCTCGAGTGGACGAGCAGACCTAGAAGCTTTCTAGACCAT
BS09964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-RA | 1818 | CG7384-PA | 1..1818 | 17..1834 | 9060 | 99.9 | Plus |
CG12446-RA | 2130 | CG12446-PA | 974..1167 | 930..1123 | 235 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-RA | 2261 | CG7384-RA | 216..2035 | 17..1836 | 9070 | 99.9 | Plus |
CG12446-RA | 2644 | CG12446-RA | 1107..1300 | 930..1123 | 235 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10508270..10509284 | 1708..694 | 5075 | 100 | Minus |
2L | 23513712 | 2L | 10509706..10510238 | 549..17 | 2635 | 99.6 | Minus |
2L | 23513712 | 2L | 10509500..10509643 | 693..550 | 720 | 100 | Minus |
2L | 23513712 | 2L | 10508085..10508212 | 1836..1709 | 640 | 100 | Minus |
X | 23542271 | X | 22810636..22810829 | 1123..930 | 235 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:10:52 has no hits.
BS09964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-27 11:17:45 Download gff for
BS09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 224..2041 | 17..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:16 Download gff for
BS09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 216..2033 | 17..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:10 Download gff for
BS09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7384-RA | 216..2033 | 17..1834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:10 Download gff for
BS09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10508087..10508212 | 1709..1834 | 100 | <- | Minus |
2L | 10508270..10509284 | 694..1708 | 100 | <- | Minus |
2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
2L | 10509706..10510238 | 17..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:16 Download gff for
BS09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10508087..10508212 | 1709..1834 | 100 | <- | Minus |
arm_2L | 10508270..10509284 | 694..1708 | 100 | <- | Minus |
arm_2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
arm_2L | 10509706..10510238 | 17..549 | 99 | | Minus |
BS09964.pep Sequence
Translation from 16 to 1833
> BS09964.pep
MTGTAAVRLSITIPTKAEEERLKKVYVQVVNGEVATPMGTASRTSTIESL
STIRIGESPERQSHKVLNTLPKIEIQTCHDQLLDIPLDTDQEQVVRQILH
RFHIPNAVWLPSLEGNAYHISFSMDFDERYENLYEALQEFGIGDREGSTV
SVVSCLAHRSYVQREDTEEQEDQPSSTEHINAQKQGIWDRFMNSVRSRLN
VAQIVRDVRQDAAITFDFCILLVSAAVLASFGLVENSTIFLASSMLISPL
MGPIIAAIFGTVIQDRSLRRLGMLNELIGILTATLVGFLFGLVVCTTDRK
YGIGEGLTEEMLSRCDLHSLVVGVFTAIPSGAAAAIGILGGNIGSLVGVA
ISASLLPPAVNSGLLWAVACIYKIFENDDSLYVDVIKSRRYSDNQATELA
VLGGISMCLTLSNVLCVYLMGILVLKVKEIAPVIGRKNRQFWKHDIKLAR
NGKVETESEILNELIANLATEDKHALGSINRQFLRHLDESNYQHTWSPLS
NRHSFSMPQPPGAGISTIHRLEQLYASRIGFNPPAVERRQRHSVVSRPSQ
RSHEVSVQLSPPQPRPRFASMPSQVGKDEPARDAAIQVASSKRFTVTPAR
VDEQT*
BS09964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7384-PA | 605 | CG7384-PA | 1..605 | 1..605 | 3063 | 100 | Plus |
CG12446-PA | 709 | CG12446-PA | 3..510 | 5..506 | 971 | 44 | Plus |
CG34109-PC | 800 | CG34109-PC | 157..519 | 92..450 | 608 | 36 | Plus |