Clone BS09964 Report

Search the DGRC for BS09964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG7384-RA
Protein status:BS09964.pep: full length peptide match
Sequenced Size:1850

Clone Sequence Records

BS09964.3prime Sequence

926 bp (864 high quality bases) assembled on 2006-04-19

> BS09964.3prime
ATGGTCTAGAAAGCTTCTAGGTCTGCTCGTCCACTCGAGCTGGTGTTACC
GTAAATCTCTTGGAGCTCGCGACTTGGATGGCCGCATCCCTAGCTGGCTC
GTCCTTTCCCACTTGCGATGGCATGCTCGCGAATCGTGGACGTGGCTGTG
GAGGACTCAGCTGAACGGAGACCTCGTGGCTCCGTTGCGATGGTCTGCTT
ACTACGCTGTGGCGTTGGCGTCGTTCTACTGCTGGTGGATTAAACCCTAT
TCTCGACGCATACAATTGTTCCAGGCGATGGATGGTGGAGATGCCGGCGC
CAGGCGGTTGTGGCATTGAGAAACTATGTCGGTTGCTGAGCGGCGACCAA
GTGTGCTGGTAGTTTGATTCGTCCAGATGGCGCAGGAACTGACGATTGAT
GGAGCCCAGTGCGTGCTTGTCTTCGGTGGCCAGATTGGCTATTAGCTCGT
TGAGTATCTCCGACTCCGTTTCCACTTTGCCATTACGCGCCAGCTTTATG
TCGTGCTTCCAGAACTGTCGGTTTTTGCGCCCAATCACCGGGGCAATCTC
CTTTACCTTCAGCACCAGGATGCCCATGAGATAGACGCACAGAACGTTGG
ACAAAGTTAGGCACATGCTGATGCCGCCGAGCACGGCCAATTCAGTGGCC
TGGTTGTCCGAGTAGCGGCGCGATTTAATCACATCCACGTAGAGCGAATC
GTCGTTCTCGAATATCTTGTAAATGCAGGCCACCGCCCACAGCAGACCGG
AGTTAACCGCAGGCGGTAGCAGCGATGCCGATATGGCCACGCCAACCAGA
GAACCAATATTCCCGCCCAGGATTCCGATGGCAGCCGCCGCTCCCGACGG
TATGGCCGTGAATACCCCACGACGAGGGAGTGCAGATCGCAGCGGGATAG
CATCTCCTCCGTCAGTCCCTCACCAA

BS09964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-PA 1818 CG7384-RA 966..1818 869..17 4265 100 Minus
CG7384-PA 1818 CG7384-RA 908..965 926..869 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-RA 2261 CG7384-RA 1123..2035 926..15 4540 99.9 Minus
CG12446-RA 2644 CG12446-RA 1107..1300 920..728 225 74.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10508270..10509054 143..926 3875 99.9 Plus
2L 23513712 2L 10508085..10508212 15..142 640 100 Plus
X 23542271 X 22810636..22810829 728..920 200 74.7 Plus
Blast to na_te.dros performed 2015-02-01 09:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 2162..2244 497..418 110 62.7 Minus

BS09964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:09 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-PA 910..1818 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:34 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-PA 910..1818 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:13 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1125..2045 6..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:00 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1125..2045 6..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:00 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10508075..10508212 6..142 97 <- Plus
2L 10508270..10509052 143..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:13 Download gff for BS09964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10508075..10508212 6..142 97 <- Plus
arm_2L 10508270..10509052 143..924 99   Plus

BS09964.5prime Sequence

939 bp (821 high quality bases) assembled on 2006-04-19

> BS09964.5prime
GAAGTTATCAGTCGACATGACGGGTACAGCGGCTGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAGGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGAC

BS09964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-PA 1818 CG7384-RA 1..923 17..939 4565 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-RA 2261 CG7384-RA 216..1138 17..939 4585 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10509706..10510238 549..17 2635 99.6 Minus
2L 23513712 2L 10509039..10509284 939..694 1230 100 Minus
2L 23513712 2L 10509500..10509643 693..550 720 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:33:14 has no hits.

BS09964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:10 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:35 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:22:33 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 216..1138 17..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:20 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 216..1138 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:20 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10509039..10509284 694..939 100 <- Minus
2L 10509500..10509643 550..693 100 <- Minus
2L 10509706..10510238 17..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:22:33 Download gff for BS09964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10509039..10509284 694..939 100 <- Minus
arm_2L 10509500..10509643 550..693 100 <- Minus
arm_2L 10509706..10510238 17..549 99   Minus

BS09964.complete Sequence

1850 bp assembled on 2010-04-27

GenBank Submission: KX801054

> BS09964.complete
GAAGTTATCAGTCGACATGACGGGTACAGCGGCTGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAGGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGACGGAGGAGATGC
TATCCCGCTGCGATCTGCACTCCCTCGTCGTTGGGGTATTCACGGCCATA
CCGTCGGGAGCGGCGGCTGCCATCGGAATCCTGGGCGGGAATATTGGTTC
TCTGGTTGGCGTGGCCATATCGGCATCGCTGCTACCGCCTGCGGTTAACT
CCGGTCTGCTGTGGGCGGTGGCCTGCATTTACAAGATATTCGAGAACGAC
GATTCGCTCTACGTGGATGTGATTAAATCGCGCCGCTACTCGGACAACCA
GGCCACTGAATTGGCCGTGCTCGGCGGCATCAGCATGTGCCTAACTTTGT
CCAACGTTCTGTGCGTCTATCTCATGGGCATCCTGGTGCTGAAGGTAAAG
GAGATTGCCCCGGTGATTGGGCGCAAAAACCGACAGTTCTGGAAGCACGA
CATAAAGCTGGCGCGTAATGGCAAAGTGGAAACGGAGTCGGAGATACTCA
ACGAGCTAATAGCCAATCTGGCCACCGAAGACAAGCACGCACTGGGCTCC
ATCAATCGTCAGTTCCTGCGCCATCTGGACGAATCAAACTACCAGCACAC
TTGGTCGCCGCTCAGCAACCGACATAGTTTCTCAATGCCACAACCGCCTG
GCGCCGGCATCTCCACCATCCATCGCCTGGAACAATTGTATGCGTCGAGA
ATAGGGTTTAATCCACCAGCAGTAGAACGACGCCAACGCCACAGCGTAGT
AAGCAGACCATCGCAACGGAGCCACGAGGTCTCCGTTCAGCTGAGTCCTC
CACAGCCACGTCCACGATTCGCGAGCATGCCATCGCAAGTGGGAAAGGAC
GAGCCAGCTAGGGATGCGGCCATCCAAGTCGCGAGCTCCAAGAGATTTAC
GGTAACACCAGCTCGAGTGGACGAGCAGACCTAGAAGCTTTCTAGACCAT

BS09964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-RA 1818 CG7384-PA 1..1818 17..1834 9060 99.9 Plus
CG12446-RA 2130 CG12446-PA 974..1167 930..1123 235 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-RA 2261 CG7384-RA 216..2035 17..1836 9070 99.9 Plus
CG12446-RA 2644 CG12446-RA 1107..1300 930..1123 235 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10508270..10509284 1708..694 5075 100 Minus
2L 23513712 2L 10509706..10510238 549..17 2635 99.6 Minus
2L 23513712 2L 10509500..10509643 693..550 720 100 Minus
2L 23513712 2L 10508085..10508212 1836..1709 640 100 Minus
X 23542271 X 22810636..22810829 1123..930 235 74.7 Minus
Blast to na_te.dros performed on 2014-11-27 01:10:52 has no hits.

BS09964.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-27 11:17:45 Download gff for BS09964.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 224..2041 17..1834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:16 Download gff for BS09964.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 216..2033 17..1834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:10 Download gff for BS09964.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 216..2033 17..1834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:10 Download gff for BS09964.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10508087..10508212 1709..1834 100 <- Minus
2L 10508270..10509284 694..1708 100 <- Minus
2L 10509500..10509643 550..693 100 <- Minus
2L 10509706..10510238 17..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:16 Download gff for BS09964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10508087..10508212 1709..1834 100 <- Minus
arm_2L 10508270..10509284 694..1708 100 <- Minus
arm_2L 10509500..10509643 550..693 100 <- Minus
arm_2L 10509706..10510238 17..549 99   Minus

BS09964.pep Sequence

Translation from 16 to 1833

> BS09964.pep
MTGTAAVRLSITIPTKAEEERLKKVYVQVVNGEVATPMGTASRTSTIESL
STIRIGESPERQSHKVLNTLPKIEIQTCHDQLLDIPLDTDQEQVVRQILH
RFHIPNAVWLPSLEGNAYHISFSMDFDERYENLYEALQEFGIGDREGSTV
SVVSCLAHRSYVQREDTEEQEDQPSSTEHINAQKQGIWDRFMNSVRSRLN
VAQIVRDVRQDAAITFDFCILLVSAAVLASFGLVENSTIFLASSMLISPL
MGPIIAAIFGTVIQDRSLRRLGMLNELIGILTATLVGFLFGLVVCTTDRK
YGIGEGLTEEMLSRCDLHSLVVGVFTAIPSGAAAAIGILGGNIGSLVGVA
ISASLLPPAVNSGLLWAVACIYKIFENDDSLYVDVIKSRRYSDNQATELA
VLGGISMCLTLSNVLCVYLMGILVLKVKEIAPVIGRKNRQFWKHDIKLAR
NGKVETESEILNELIANLATEDKHALGSINRQFLRHLDESNYQHTWSPLS
NRHSFSMPQPPGAGISTIHRLEQLYASRIGFNPPAVERRQRHSVVSRPSQ
RSHEVSVQLSPPQPRPRFASMPSQVGKDEPARDAAIQVASSKRFTVTPAR
VDEQT*

BS09964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-PA 605 CG7384-PA 1..605 1..605 3063 100 Plus
CG12446-PA 709 CG12446-PA 3..510 5..506 971 44 Plus
CG34109-PC 800 CG34109-PC 157..519 92..450 608 36 Plus