Clone BS09966 Report

Search the DGRC for BS09966

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptsea-RA
Protein status:BS09966.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09966.3prime Sequence

863 bp (856 high quality bases) assembled on 2006-04-19

> BS09966.3prime
ATGGTCTAGAAAGCTTTTACACCCACACCTTGTTGAACAGATCCATGAAG
GAGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAA
TCTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGA
TCTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCC
TGCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGC
TGCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCT
TCGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAG
AAGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCC
CTTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGT
GGGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAAC
TTCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATAC
GCCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTC
GGGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCC
GCTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAG
ACCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGC
CGTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTC
ACATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACC
GCCGGCGACGATG

BS09966.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 108..954 863..17 4235 100 Minus
CG6782-PC 954 CG6782-RC 108..954 863..17 4235 100 Minus
CG6782-PD 954 CG6782-RD 108..954 863..17 4235 100 Minus
CG6782-PE 954 CG6782-RE 108..954 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 545..1391 863..17 4235 100 Minus
sea-RE 1444 CG6782-RE 329..1175 863..17 4235 100 Minus
sea-RD 1660 CG6782-RD 545..1391 863..17 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560165..11560794 17..646 3150 100 Plus
3R 32079331 3R 11560852..11561070 645..863 1095 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:47:07 has no hits.

BS09966.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:13 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 108..954 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:40 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 108..954 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:32:52 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 231..1079 12..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:23 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 545..1393 12..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:23 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560163..11560792 12..644 99 <- Plus
3R 11560852..11561070 645..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:32:52 Download gff for BS09966.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7386574..7386792 645..863 100   Plus
arm_3R 7385885..7386514 12..644 99 <- Plus

BS09966.5prime Sequence

883 bp (828 high quality bases) assembled on 2006-04-19

> BS09966.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
AGTCCCGCCGCCTTCTACAAGGGCACCGTGCCA

BS09966.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 1..867 17..883 4310 99.8 Plus
CG6782-PC 954 CG6782-RC 1..867 17..883 4310 99.8 Plus
CG6782-PD 954 CG6782-RD 1..867 17..883 4310 99.8 Plus
CG6782-PE 954 CG6782-RE 1..867 17..883 4310 99.8 Plus
CG6783-PC 474 CG6783-RC 370..474 16..120 525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1304 9..883 4330 99.7 Plus
sea-RE 1444 CG6782-RE 214..1088 9..883 4330 99.7 Plus
sea-RD 1660 CG6782-RD 430..1304 9..883 4330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560252..11560794 883..341 2700 99.8 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 09:03:14 has no hits.

BS09966.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:15 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:42 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:03 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 116..989 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:59:35 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 430..1303 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:59:35 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560253..11560792 343..882 99 <- Minus
3R 11560852..11561185 9..342 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:03 Download gff for BS09966.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385975..7386514 343..882 99 <- Minus
arm_3R 7386574..7386907 9..342 99   Minus

BS09966.complete Sequence

986 bp (986 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636512

> BS09966.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGTAAAAGCTTTCTAGACCAT

BS09966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
sea-RE 954 CG6782-PE 1..954 17..970 4770 100 Plus
sea-RD 954 CG6782-PD 1..954 17..970 4770 100 Plus
sea-RC 954 CG6782-PC 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1391 9..970 4780 99.8 Plus
sea-RE 1444 CG6782-RE 214..1175 9..970 4780 99.8 Plus
sea-RD 1660 CG6782-RD 430..1391 9..970 4780 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560165..11560794 970..341 3150 100 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 23:55:23 has no hits.

BS09966.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:53 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:43 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 425..1388 9..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:31 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RC 124..1075 17..968 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:53 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 425..1388 9..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:56 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RD 438..1389 17..968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:56 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11560167..11560792 343..968 100 <- Minus
3R 11560852..11561177 17..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:31 Download gff for BS09966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385889..7386514 343..968 100 <- Minus
arm_3R 7386574..7386899 17..342 100   Minus

BS09966.pep Sequence

Translation from 16 to 969

> BS09966.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWV*

BS09966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
sea-PE 317 CG6782-PE 1..317 1..317 1637 100 Plus
sea-PD 317 CG6782-PD 1..317 1..317 1637 100 Plus
sea-PC 317 CG6782-PC 1..317 1..317 1637 100 Plus
sea-PA 317 CG6782-PA 1..317 1..317 1637 100 Plus
GC1-PB 321 CG18347-PB 22..293 34..291 312 30.8 Plus