Clone Sequence Records
BS09966.3prime Sequence
863 bp (856 high quality bases) assembled on 2006-04-19
> BS09966.3prime
ATGGTCTAGAAAGCTTTTACACCCACACCTTGTTGAACAGATCCATGAAG
GAGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAA
TCTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGA
TCTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCC
TGCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGC
TGCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCT
TCGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAG
AAGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCC
CTTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGT
GGGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAAC
TTCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATAC
GCCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTC
GGGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCC
GCTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAG
ACCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGC
CGTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTC
ACATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACC
GCCGGCGACGATG
BS09966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 108..954 | 863..17 | 4235 | 100 | Minus |
CG6782-PC | 954 | CG6782-RC | 108..954 | 863..17 | 4235 | 100 | Minus |
CG6782-PD | 954 | CG6782-RD | 108..954 | 863..17 | 4235 | 100 | Minus |
CG6782-PE | 954 | CG6782-RE | 108..954 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 545..1391 | 863..17 | 4235 | 100 | Minus |
sea-RE | 1444 | CG6782-RE | 329..1175 | 863..17 | 4235 | 100 | Minus |
sea-RD | 1660 | CG6782-RD | 545..1391 | 863..17 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560165..11560794 | 17..646 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 11560852..11561070 | 645..863 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:47:07 has no hits.
BS09966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:13 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 108..954 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:40 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 108..954 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:32:52 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 231..1079 | 12..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:23 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 545..1393 | 12..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:23 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560163..11560792 | 12..644 | 99 | <- | Plus |
3R | 11560852..11561070 | 645..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:32:52 Download gff for
BS09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7386574..7386792 | 645..863 | 100 | | Plus |
arm_3R | 7385885..7386514 | 12..644 | 99 | <- | Plus |
BS09966.5prime Sequence
883 bp (828 high quality bases) assembled on 2006-04-19
> BS09966.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
AGTCCCGCCGCCTTCTACAAGGGCACCGTGCCA
BS09966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG6782-PC | 954 | CG6782-RC | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG6782-PD | 954 | CG6782-RD | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG6782-PE | 954 | CG6782-RE | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG6783-PC | 474 | CG6783-RC | 370..474 | 16..120 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1304 | 9..883 | 4330 | 99.7 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1088 | 9..883 | 4330 | 99.7 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1304 | 9..883 | 4330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560252..11560794 | 883..341 | 2700 | 99.8 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:03:14 has no hits.
BS09966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:15 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:42 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:03 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 116..989 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:59:35 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 430..1303 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:59:35 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560253..11560792 | 343..882 | 99 | <- | Minus |
3R | 11560852..11561185 | 9..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:03 Download gff for
BS09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385975..7386514 | 343..882 | 99 | <- | Minus |
arm_3R | 7386574..7386907 | 9..342 | 99 | | Minus |
BS09966.complete Sequence
986 bp (986 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636512
> BS09966.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGTAAAAGCTTTCTAGACCAT
BS09966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-RE | 954 | CG6782-PE | 1..954 | 17..970 | 4770 | 100 | Plus |
sea-RD | 954 | CG6782-PD | 1..954 | 17..970 | 4770 | 100 | Plus |
sea-RC | 954 | CG6782-PC | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1391 | 9..970 | 4780 | 99.8 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1175 | 9..970 | 4780 | 99.8 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1391 | 9..970 | 4780 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560165..11560794 | 970..341 | 3150 | 100 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:23 has no hits.
BS09966.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:53 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:43 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 425..1388 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:31 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 124..1075 | 17..968 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:53 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 425..1388 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:56 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 438..1389 | 17..968 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:56 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560167..11560792 | 343..968 | 100 | <- | Minus |
3R | 11560852..11561177 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:31 Download gff for
BS09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385889..7386514 | 343..968 | 100 | <- | Minus |
arm_3R | 7386574..7386899 | 17..342 | 100 | | Minus |
BS09966.pep Sequence
Translation from 16 to 969
> BS09966.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWV*
BS09966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-PE | 317 | CG6782-PE | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PD | 317 | CG6782-PD | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PC | 317 | CG6782-PC | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PA | 317 | CG6782-PA | 1..317 | 1..317 | 1637 | 100 | Plus |
GC1-PB | 321 | CG18347-PB | 22..293 | 34..291 | 312 | 30.8 | Plus |