Clone Sequence Records
BS09967.complete Sequence
2333 bp assembled on 2010-02-11
GenBank Submission: KX801605
> BS09967.complete
GAAGTTATCAGTCGACATGAAGCTGGCTACGAAAAAAATTAAGACCCTGG
GCAAATCCAAGCCTGACCTAAGCAAAAAGAAGCCCGCCAAGGATGCCATC
AGGAAGACGAAACCGCAAACAACCTCTGAAACGAAAGTTACTCCAAGAAA
CCCGAAGCAGAAAGTCGCCGAACCAGTGAAGAATGGGAAGACCACAAAAA
AGGGATTTAAGAAATCCCACAAAGAGGAGCTTGAAGGGCTTAAAGATATA
GACCCAGAATTTTATGATTTCTTAAAAAATAATGATAAGAAGCTACTGGA
CTTTAATTTACTGGACACAGATGATGATGATGATGAAGAGGGGGATGAGG
AAGACAAGGAAGATACGGTAACTAAGGAAAGTAAGGATGACGAGGATGAC
GAAGAGAAGTACCACAAACCCAGCAAGGATTTGGAGGTGGCTAGCGATGA
GAGTGACTTTGAGGTCGACGAAGAGGACGATGCGGCAGCTGGAGGTATCC
AAAAGATCACCCTCAACCTGTTGCATCAGTGGGAACAGCAATTGGGCCAG
GCCAACATATCTATTGACATTGTCCGCAAGGTTATCCAGGCTTTCAATTC
AGCTCTGGCTAGTATCTCTGCCGACGGAGCGGACGGAGGAGAGAACAAGC
ATAATGCTGCCGCATTTAAGGTAGTGGGGGCAGCTGCGTTTAATGGAGTA
ATTCAGCTCTGCGTAATCCACCTGCAGCCCGCTATAATTCGATTGCTGGG
CGTTAGACCCAACAGCAGCCTACCGCTGCACAAGCACAAGAAGTGGGTCA
AGGTGCGAGGCTGTTTGCGCTACTACCTCACCGATTTGATTCGTCTGGTG
GAGCAGGTGTCCAGTCCAAATATCTTGGGCGTGTTGCTGAAGCATTTGCA
TCAAATGGCCGGCATGGTGGTTCCCTTTTCGGCACTTGGAAAGACCATAT
TAAAGCGTCTGGTTGTCTTATGGTCCACTGGAGATGAAACAGTTCGTGTT
CTGGCCTTTCTCTGCATTCTGAAGATAACCAGGAAACAGCAGGCGACCAT
GCTGAATCACGTTCTAAAAGCCATGTACCTGGCCTATGTACGCAATTCCA
AGTTCGTGTCGCCGAACACTTTACCAGGAATCAACTTTATGCGCCGCTCG
CTGGTGGAGATGTTCGCGTTGGATTTAAACGTCAGTTATCAACATGTCTT
CCTCTACATCCGACAGTTGGCCATTCACCTGCGAAATGCAGTGATCCTTA
AGAAAAAGGACAGTTTCCAAGCGGTTTACAACTGGCAATTTATTAACTCG
CTGCGCTTGTGGGCAGATCTCCTGGGAGCAAGTGCGAACAAACCACAGTT
GCAGCCTCTGATTTATCCCCTTGTTACCATTGCCACCGGAGTGATTCGAC
TGATACCCACCGCTCAATACTTCCCATTGCGATTCCACTGTCTGCAGACC
CTAATTTCACTGGCCAAAGAGACAAACACATATGTGCCGGTGCTTCCACT
CATTGTGGAGGTATTAAAGAGCAATACCTTTAACCGCAAGCACTCGGCGG
TATCCATGAAGCCAGTGCAGTTTACCTGCGTCCTTAGGCTTAACAAAGGG
CAGTTGGCGGAAAATGGCTTCCGCGATGAGGTGATCGAGCAGGTGTGTGG
GCTTCTGTTGGAATATCTCGCTCATGAGTCCACCTCGCTGGCCTTTAGTG
ATTTGGTGGTGCCCACTGTCATGGCCATCAAAACGTACCTTAAGGAATGC
AGGAATGCCAATTATGCTCGAAAACTTAAACAGCTGCTAGAGAAGATTCA
GGAGAGTGCCCGCTTCATAGAGCAGCAACGTGGCAAGAGCAGTGTCACTT
TTGACATAAAGGATGCGCAGGCGGTCGCCGCCTGGGAGCAGCAACTCCGT
CTTAAGCGCACTCCACTAGACGTCTACTATGCCAGCTGGCTAAAGACACA
CGAGACCAAGAAGCGACGACAGGCAGCACATACAGATGAAATCAATGCGG
ACTATGATGTGCCCAAGCTAAAGAAACTACCGGTCAAAACCGGAGTACCA
GTGAGAAATGAAAACGGCGAGGTCGAACTCTTCCCCTCGGACTCGGAAGA
TGAAGGCGATGATGGCCTGCATTTGGGATCAGATGATGATGACGACGAGG
ATGTACAGGAGGAGGAGGAGGTGGAAGTTGAGCACCCTAAAGCCAAAAAG
GCGAAGAAAGAGAAGCCCGAGAAACAAAAACCTCGGCCAGCAACAGTGGA
AGATGATTACGACGAGGCGGGTGGAGCCGTGGATATTGTTAAGGACTTAG
ATTTGAACGAATGGTAAAAGCTTTCTAGACCAT
BS09967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-RA | 2301 | CG9246-PA | 1..2301 | 17..2317 | 11505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-RA | 2391 | CG9246-RA | 39..2341 | 17..2319 | 11515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21164760..21166040 | 1039..2319 | 6405 | 100 | Plus |
| 2L | 23513712 | 2L | 21163679..21164705 | 17..1043 | 5135 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:43 has no hits.
BS09967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:13 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 69..2367 | 17..2315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:40 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 39..2337 | 17..2315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:57 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 69..2367 | 17..2315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:39 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 39..2337 | 17..2315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:39 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21163679..21164704 | 17..1042 | 100 | -> | Plus |
| 2L | 21164764..21166036 | 1043..2315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:40 Download gff for
BS09967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21163679..21164704 | 17..1042 | 100 | -> | Plus |
| arm_2L | 21164764..21166036 | 1043..2315 | 100 | | Plus |
BS09967.3prime Sequence
864 bp (788 high quality bases) assembled on 2006-04-19
> BS09967.3prime
ATGGTCTAGAAAGCTTTTACCATTCGTTCAAATCTAAGTCCTTAACAATA
TCCACGGCTCCACCCGCCTCGTCGTAATCATCTTCCACTGTTGCTGGCCG
AGGTTTTTGTTTCTCGGGCTTCTCTTTCTTCGCCTTTTTGGCTTTAGGGT
GCTCAACTTCCACCTCCTCCTCCTCCTGTACATCCTCGTCGTCATCATCA
TCTGATCCCAAATGCAGGCCATCATCGCCTTCATCTTCCGAGTCCGAGGG
GAAGAGTTCGACCTCGCCGTTTTCATTTCTCACTGGTACTCCGGTTTTGA
CCGGTAGTTTCTTTAGCTTGGGCACATCATAGTCCGCATTGATTTCATCT
GTATGTGCTGCCTGTCGTCGCTTCTTGGTCTCGTGTGTCTTTAGCCAGCT
GGCATAGTAGACGTCTAGTGGAGTGCGCTTAAGACGGAGTTGCTGCTCCC
AGGCGGCGACCGCCTGCGCATCCTTTATGTCAAAAGTGACACTGCTCTTG
CCACGTTGCTGCTCTATGAAGCGGGCACTCTCCTGAATCTTCTCTAGCAG
CTGTTTAAGTTTTCGAGCATAATTGGCATTCCTGCATTCCTTAAGGTACG
TTTTGATGGCCATGACAGTGGGCACCACCAAATCACTAAAGGCCAGCGAG
GTGGACTCATGAGCGAGATATTCCAACAGAAGCCCACACACCTGCTCGAT
CACCTCATCGCGGAAGCCATTTTCCGCCAACTGCCCTTTGTTAAGCCTAA
GGACGCAGGTAAACTGCACTGGCTTCATGGATACCGCCGAGTGCTTGCGG
TTAAAGGTATTGGCTCTTAATACCTCCACAATGAGTGGAAGCACCGGCAC
ATAATGTGTTTGTC
BS09967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-PA | 2301 | CG9246-RA | 1506..2301 | 812..17 | 3980 | 100 | Minus |
| CG9246-PA | 2301 | CG9246-RA | 1465..1501 | 853..817 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-RA | 2391 | CG9246-RA | 1493..2341 | 864..15 | 4180 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21165192..21166040 | 864..15 | 4140 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-03 15:39:52 has no hits.
BS09967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:16 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-PA | 1455..2301 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:43 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-PA | 1455..2301 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:20:30 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 1493..2353 | 2..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:48:14 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 1493..2353 | 2..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:48:14 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21165192..21166052 | 2..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:20:30 Download gff for
BS09967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21165192..21166052 | 2..864 | 99 | | Minus |
BS09967.5prime Sequence
956 bp (789 high quality bases) assembled on 2006-04-19
> BS09967.5prime
GAAGTTATCAGTCGACATGAAGCTGGCTACGAAAAAAATTAAGACCCTGG
GCAAATCCAAGCCTGACCTAAGCAAAAAGAAGCCCGCCAAGGATGCCATC
AGGAAGACGAAACCGCAAACAACCTCTGAAACGAAAGTTACTCCAAGAAA
CCCGAAGCAGAAAGTCGCCGAACCAGTGAAGAATGGGAAGACCACAAAAA
AGGGATTTAAGAAATCCCACAAAGAGGAGCTTGAAGGGCTTAAAGATATA
GACCCAGAATTTTATGATTTCTTAAAAAATAATGATAAGAAGCTACTGGA
CTTTAATTTACTGGACACAGATGATGATGATGATGAAGAGGGGGATGAGG
AAGACAAGGAAGATACGGTAACTAAGGAAAGTAAGGATGACGAGGATGAC
GAAGAGAAGTACCACAAACCCAGCAAGGATTTGGAGGTGGCTAGCGATGA
GAGTGACTTTGAGGTCGACGAAGAGGACGATGCGGCAGCTGGAGGTATCC
AAAAGATCACCCTCAACCTGTTGCATCAGTGGGAACAGCAATTGGGCCAG
GCCAACATATCTATTGACATTGTCCGCAAGGTTATCCAGGCTTTCAATTC
AGCTCTGGCTAGTATCTCTGCCGACGGAGCGGACGGAGGAGAGAACAAGC
ATAATGCTGCCGCATTTAAGGTAGTGGGGGCAGCTGCGTTTAATGGAGTA
ATTCAGCTCTGCGTAATCCACCTGCAGCCCGCTATAATTCGATTGCTGGG
CGTTAGACCCAACAGCAGCCTACCGCTGCACAAGCACAAGAAGTGGGTCA
AGGTGCGAGGCTGTTTGCGCTACTACCTCACCGATTTGATTCGTCTGGTG
GAGCANGTGTCCAGTCCAAATATCTTGGGCGTGTTGCTGAAACATTTGCA
TCAAATGGCCGGCATGTTGGTTCCCTTTTCGGCACTTGAAAAGACATATT
AAAGCG
BS09967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-PA | 2301 | CG9246-RA | 1..929 | 17..945 | 4551 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-RA | 2391 | CG9246-RA | 39..979 | 17..956 | 4624 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21163679..21164619 | 17..956 | 4599 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:24:49 has no hits.
BS09967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:17 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:44 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:32 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 39..979 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:12 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9246-RA | 39..979 | 17..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:12 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21163679..21164619 | 17..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:32 Download gff for
BS09967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21163679..21164619 | 17..956 | 99 | | Plus |
BS09967.pep Sequence
Translation from 16 to 2316
> BS09967.pep
MKLATKKIKTLGKSKPDLSKKKPAKDAIRKTKPQTTSETKVTPRNPKQKV
AEPVKNGKTTKKGFKKSHKEELEGLKDIDPEFYDFLKNNDKKLLDFNLLD
TDDDDDEEGDEEDKEDTVTKESKDDEDDEEKYHKPSKDLEVASDESDFEV
DEEDDAAAGGIQKITLNLLHQWEQQLGQANISIDIVRKVIQAFNSALASI
SADGADGGENKHNAAAFKVVGAAAFNGVIQLCVIHLQPAIIRLLGVRPNS
SLPLHKHKKWVKVRGCLRYYLTDLIRLVEQVSSPNILGVLLKHLHQMAGM
VVPFSALGKTILKRLVVLWSTGDETVRVLAFLCILKITRKQQATMLNHVL
KAMYLAYVRNSKFVSPNTLPGINFMRRSLVEMFALDLNVSYQHVFLYIRQ
LAIHLRNAVILKKKDSFQAVYNWQFINSLRLWADLLGASANKPQLQPLIY
PLVTIATGVIRLIPTAQYFPLRFHCLQTLISLAKETNTYVPVLPLIVEVL
KSNTFNRKHSAVSMKPVQFTCVLRLNKGQLAENGFRDEVIEQVCGLLLEY
LAHESTSLAFSDLVVPTVMAIKTYLKECRNANYARKLKQLLEKIQESARF
IEQQRGKSSVTFDIKDAQAVAAWEQQLRLKRTPLDVYYASWLKTHETKKR
RQAAHTDEINADYDVPKLKKLPVKTGVPVRNENGEVELFPSDSEDEGDDG
LHLGSDDDDDEDVQEEEEVEVEHPKAKKAKKEKPEKQKPRPATVEDDYDE
AGGAVDIVKDLDLNEW*
BS09967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9246-PA | 766 | CG9246-PA | 1..766 | 1..766 | 3935 | 100 | Plus |
