Clone Sequence Records
BS09968.3prime Sequence
829 bp (753 high quality bases) assembled on 2006-04-19
> BS09968.3prime
ATGGTCTAGAAAGCTTCTACTTTTTTACAGCTCCCATCCGACTGGCGTCC
TGACTTGGATACGGTACTTGACCCGGTGGCGGAGGAATCGATATGGAATC
CAAATTGACACCCGAGGAAGAAAGGGCTGTGGAAGTGGCGTTTCCGTAGG
GAGCTGCATAAGTAGGCTGACCATACATTTGGTAAGCCGACGCCGGAACT
AGATTTGATGGCAACTGATGCAGCTTCATGCCGGCGGGCATGACATTGAT
TTGCTCTTGGCGAAGATTGAAGTAGTCGTTGGGCTTCGCGCTAGGCGGTG
GAATGCCGGCCAAGTCGAAGCGTCTGTCTGTCTTTGCAGCGGTGCCCTGC
TTTGCCTGAGAGTGAGCCCACTTAATGCTCACCTTCCGGCCCTGGATCAC
CAGTTTATTAAAGGTCCGCTCAGCAGCCAGCTCGGCAGCGTTTCTTTTGG
TGTATTGCACAAAAGCGCACTGCTGGCGTGGCACCAGCGCAATTGATCGA
ATTTCGCCGAACTGGTAGAACTGATCTCGCAGCTCGGGTTCCGTGATTTC
TTCAGGAAGGTTCCCCACATAGAGAGTTGTGATGTTGCGGTCCTCCGGCG
GCTCGAGTGTGGGAAGCGAGGCTGCACGCTTCATGATCTTCTCGGCCACA
GGATCGTTGCGTCCGTAGTACCTGTCCTTGATGTTTTGCTCACATAGCGG
ATCGTCCGGCTCGTTGGGCTTGTCGTGGCGGTATGGGCACTCCTCTCCAC
GCTTGCACTCGCCCTTAACCCAAAAGGAGCAGATGTGCGGCCGATTTCTT
TTGAATAGGGTGCTGTGCGCGCAAGCTTG
BS09968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-PA | 1257 | CG14641-RA | 471..1257 | 803..17 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-RA | 1564 | CG14641-RA | 544..1357 | 829..17 | 4030 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4230986..4231799 | 17..829 | 4005 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:47:54 has no hits.
BS09968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:18 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-PA | 444..1257 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:46 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-PA | 444..1257 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:11 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 544..1357 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:21 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 544..1357 | 17..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:21 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4230986..4231799 | 17..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:11 Download gff for
BS09968.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 56708..57521 | 17..829 | 99 | | Plus |
BS09968.5prime Sequence
839 bp (781 high quality bases) assembled on 2006-04-19
> BS09968.5prime
GAAGTTATCAGTCGACATGTCTATGTCAAAAACGACTAACACCTATAACC
GGCAGAACTGGGAAGATGCTGAATTCCCAATTCTGTGCCAAACTTGCCTT
GGCGACAATCCGTACGTGCGGATGATTAAAGAGCGGTTCGGCAAGGAATG
CAAGATATGCACGCGTCCATTCACAATATTTCGATGGTGTCCTGGTGCTC
GTATGCGCTTCAAAAAGACGGAGATATGTCAAACGTGTGCGCGCCTGAAG
AACGTGTGTCAGACCTGCCTCTTGGACCTGGAGTACGGACTGCCGATTCA
AGTACGAGATGCGGCGCTCAAAGTGGCTGACAATATGCCACAAAGCGACG
TTAACAAGGAATACTACATCCAAAACATAGACGCCCAGCTGCAGGACGGA
GATGGCACGGAGGCGGCAGGAGCTGTCGGTCGATCCCTCGCCGCCAACGA
GATGTTGTCCAAGCTTGCGCGCACAGCACCCTATTACAAAAGAAATCGGC
CGCACATCTGCTCCTTTTGGGTTAAGGGCGAGTGCAAGCGTGGAGAGGAG
TGCCCATACCGCCACGACAAGCCCAACGAGCCGGACGATCCGCTATGTGA
GCAAAACATCAAGGACAGGTACTACGGACGCAACGATCCTGTGGCCGAGA
AGATCATGAAGCGTGCAGCCTCGCTTCCCACACTCGAGCCGCCGGAGGAC
CGCAACATCACAACTCTCTATGTGGGGAACCTTCCTGAAAAAATCACGGA
ACCCGAGCTGCGAGATCAGTTCTACCAGTTCGGCGAAATTCGATCAATTG
CGCTGGTGCCACGCCAGCAGTGCGCTTTTGTGCAATACA
BS09968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-PA | 1257 | CG14641-RA | 1..823 | 17..839 | 4090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-RA | 1564 | CG14641-RA | 101..923 | 17..839 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4231420..4232242 | 839..17 | 4100 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:25:31 has no hits.
BS09968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:19 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:40:47 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:45 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 101..922 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:54 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 101..922 | 17..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:54 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4231421..4232242 | 17..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:45 Download gff for
BS09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 57143..57964 | 17..838 | 99 | | Minus |
BS09968.complete Sequence
1289 bp assembled on 2008-08-15
GenBank Submission: FJ636513
> BS09968.complete
GAAGTTATCAGTCGACATGTCTATGTCAAAAACGACTAACACCTATAACC
GGCAGAACTGGGAAGATGCTGAATTCCCAATTCTGTGCCAAACTTGCCTT
GGCGACAATCCGTACGTGCGGATGATTAAAGAGCGGTTCGGCAAGGAATG
CAAGATATGCACGCGTCCATTCACAATATTTCGATGGTGTCCTGGTGCTC
GTATGCGCTTCAAAAAGACGGAGATATGTCAAACGTGTGCGCGCCTGAAG
AACGTGTGTCAGACCTGCCTCTTGGACCTGGAGTACGGACTGCCGATTCA
AGTACGAGATGCGGCGCTCAAAGTGGCTGACAATATGCCACAAAGCGACG
TTAACAAGGAATACTACATCCAAAACATAGACGCCCAGCTGCAGGACGGA
GATGGCACGGAGGCGGCAGGAGCTGTCGGTCGATCCCTCGCCGCCAACGA
GATGTTGTCCAAGCTTGCGCGCACAGCACCCTATTACAAAAGAAATCGGC
CGCACATCTGCTCCTTTTGGGTTAAGGGCGAGTGCAAGCGTGGAGAGGAG
TGCCCATACCGCCACGACAAGCCCAACGAGCCGGACGATCCGCTATGTGA
GCAAAACATCAAGGACAGGTACTACGGACGCAACGATCCTGTGGCCGAGA
AGATCATGAAGCGTGCAGCCTCGCTTCCCACACTCGAGCCGCCGGAGGAC
CGCAACATCACAACTCTCTATGTGGGGAACCTTCCTGAAGAAATCACGGA
ACCCGAGCTGCGAGATCAGTTCTACCAGTTCGGCGAAATTCGATCAATTG
CGCTGGTGCCACGCCAGCAGTGCGCTTTTGTGCAATACACCAAAAGAAAC
GCTGCCGAGCTGGCTGCTGAGCGGACCTTTAATAAACTGGTGATCCAGGG
CCGGAAGGTGAGCATTAAGTGGGCTCACTCTCAGGCAAAGCAGGGCACCG
CTGCAAAGACAGACAGACGCTTCGACTTGGCCGGCATTCCACCGCCTAGC
GCGAAGCCCAACGACTACTTCAATCTTCGCCAAGAGCAAATCAATGTCAT
GCCCGCCGGCATGAAGCTGCATCAGTTGCCATCAAATCTAGTTCCGGCGT
CGGCTTACCAAATGTATGGTCAGCCTACTTATGCAGCTCCCTACGGAAAC
GCCACTTCCACAGCCCTTTCTTCCTCGGGTGTCAATTTGGATTCCATATC
GATTCCTCCGCCACCGGGTCAAGTACCGTATCCAAGTCAGGACGCCAGTC
GGATGGGAGCTGTAAAAAAGTAGAAGCTTTCTAGACCAT
BS09968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-RA | 1257 | CG14641-PA | 1..1257 | 17..1273 | 6270 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-RA | 1564 | CG14641-RA | 101..1357 | 17..1273 | 6270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4230986..4232242 | 1273..17 | 6270 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:44 has no hits.
BS09968.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:26 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 114..1370 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:47 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 101..1357 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:39 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 114..1370 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:55 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14641-RA | 101..1357 | 17..1273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:55 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4230986..4232242 | 17..1273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:47 Download gff for
BS09968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 56708..57964 | 17..1273 | 99 | | Minus |
BS09968.pep Sequence
Translation from 16 to 1272
> BS09968.pep
MSMSKTTNTYNRQNWEDAEFPILCQTCLGDNPYVRMIKERFGKECKICTR
PFTIFRWCPGARMRFKKTEICQTCARLKNVCQTCLLDLEYGLPIQVRDAA
LKVADNMPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKL
ARTAPYYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKD
RYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRD
QFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSI
KWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMK
LHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPP
GQVPYPSQDASRMGAVKK*
BS09968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14641-PA | 418 | CG14641-PA | 1..418 | 1..418 | 2240 | 100 | Plus |
