Clone BS09977 Report

Search the DGRC for BS09977

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est3-RA
Protein status:BS09977.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09977.3prime Sequence

871 bp (794 high quality bases) assembled on 2006-04-19

> BS09977.3prime
ATGGTCTAGAAAGCTTCTAGCCCGTTGATTGGCAGACACTTTCCCAGACC
CTAAGCTTCTGCAGCTCCGGCAGCTCCATCATCTTAATGTTCTCCGAGAT
GTTGAGGCACTCCAAAGCGGATTTGCTGTTGAGTGGCTTCCATTCTTTGG
CTCGCGGAAGCTGATCCTGGATGAGCTTGCAATTAGGATTCGATGTCCTC
GCGAAGCTTGTCAACATGTCAATCATCCTCTCGATGGTGAGGAACTCGGG
CGTGTGCTTGTCCAGCTTCCAGGAGAAGTCGCCGTACCACAGGTAGGAGT
GATCATCGACGTGGGCTACGCCCCGCAACTTGTCACCGCAGTACTTCAAA
CGCTGGTGATTGAACGTGGGAGAGTCAAAATCGAATCGATAGAGGTATGT
GGAAGCACTGGAGCTCTTTACACGGGATCTCAGCGTTTTAAGAATGGGAT
GCCAAAACACTTTATAGCTGGCGTACTCACAGTACGCTTTTAAGGACTCT
GGCGACATGGCAGAAGGATCATTACCGCCAAAGTGGGTCTCCTGGAGTCG
CTGGCCCAGATGTCGAGCTAGAGCCTGGGGCAGATTACGCTTCACATCCA
GTGGCAGCATGTGCTCGGGTTCTTTTTTCAGGCTGGTCAGCAAGTACGGA
GCCATTTGGACGCGGGCGTACATCAGCAAGCCCTCGAAGGAAGTGCCGCT
CATCAGTACCGGAATCCTATTTCCCCAGGCCTTGTCCAGCAGTTCCTGCG
GATGATTGGGCAGCGCGCAGTGCTCCGTTTTATATGGCTCCACCATAGGT
CCAAACTGAAAGACGNCATCGTCCAGGTGCTCCTCTGCGCTAAGTAGATA
TGGTCGAACCAGTTTCTCTCC

BS09977.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1257-PA 1632 alpha-Est3-RA 778..1632 871..17 4231 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est3-RD 1726 CG1257-RD 801..1655 871..17 4249 99.8 Minus
alpha-Est3-RC 1878 CG1257-RC 953..1807 871..17 4249 99.8 Minus
alpha-Est3-RB 1834 CG1257-RB 909..1763 871..17 4249 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7539043..7539503 17..477 2305 100 Plus
3R 32079331 3R 7539563..7539958 476..871 1954 99.5 Plus
Blast to na_te.dros performed on 2015-01-30 17:29:12 has no hits.

BS09977.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:33 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1257-PA 778..1632 17..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:08 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1257-PA 778..1632 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:09 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RB 909..1763 17..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:42 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RB 909..1763 17..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:42 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7539043..7539501 17..475 100 <- Plus
3R 7539563..7539958 476..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:09 Download gff for BS09977.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3364765..3365223 17..475 100 <- Plus
arm_3R 3365285..3365680 476..871 99   Plus

BS09977.5prime Sequence

941 bp (780 high quality bases) assembled on 2006-04-19

> BS09977.5prime
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATATAAAACGGAGCACTGCGC
GCTGCCCAATCATCCGCAGGAACTGCTGGGACAGGCCTGGG

BS09977.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1257-PA 1632 alpha-Est3-RA 1..913 17..929 4565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est3-RD 1726 CG1257-RD 22..948 15..941 4590 99.8 Plus
alpha-Est3-RB 1834 CG1257-RB 130..1056 15..941 4590 99.8 Plus
alpha-Est3-RA 1825 CG1257-RA 121..1047 15..941 4590 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7539811..7540464 941..288 3225 99.5 Minus
3R 32079331 3R 7540868..7541134 289..23 1335 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:41:50 has no hits.

BS09977.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:34 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1257-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:10 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1257-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:06 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 110..1047 5..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:50 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 110..1047 5..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:50 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7540868..7541134 23..289 100   Minus
3R 7539811..7540462 290..941 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:06 Download gff for BS09977.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3365533..3366184 290..941 99 <- Minus
arm_3R 3366590..3366856 23..289 100   Minus

BS09977.complete Sequence

1664 bp assembled on 2007-10-17

GenBank Submission: FJ636514

> BS09977.complete
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATATAAAACGGAGCACTGCGC
GCTGCCCAATCATCCGCAGGAACTGCTGGACAAGGCCTGGGGAAATAGGA
TTCCGGTACTGATGAGCGGCACTTCCTTCGAGGGCTTGCTGATGTACGCC
CGCGTCCAAATGGCTCCGTACTTGCTGACCAGCCTGAAAAAAGAACCCGA
GCACATGCTGCCACTGGATGTGAAGCGTAATCTGCCCCAGGCTCTAGCTC
GACATCTGGGCCAGCGACTCCAGGAGACCCACTTTGGCGGTAATGATCCT
TCTGCCATGTCGCCAGAGTCCTTAAAAGCGTACTGTGAGTACGCCAGCTA
TAAAGTGTTTTGGCATCCCATTCTTAAAACGCTGAGATCCCGTGTAAAGA
GCTCCAGTGCTTCCACATACCTCTATCGATTCGATTTTGACTCTCCCACG
TTCAATCACCAGCGTTTGAAGTACTGCGGTGACAAGTTGCGGGGCGTAGC
CCACGTCGATGATCACTCCTACCTGTGGTACGGCGACTTCTCCTGGAAGC
TGGACAAGCACACGCCCGAGTTCCTCACCATCGAGAGGATGATTGACATG
TTGACAAGCTTCGCGAGGACATCGAATCCTAATTGCAAGCTCATCCAGGA
TCAGCTTCCGCGAGCCAAAGAATGGAAGCCACTCAACAGCAAATCCGCTT
TGGAGTGCCTCAACATCTCGGAGAACATTAAGATGATGGAGCTGCCGGAG
CTGCAGAAGCTTAGGGTCTGGGAAAGTGTCTGCCAATCAACGGGCTAGAA
GCTTTCTAGACCAT

BS09977.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est3-RD 1632 CG1257-PD 1..1632 17..1648 8160 100 Plus
alpha-Est3-RB 1632 CG1257-PB 1..1632 17..1648 8160 100 Plus
alpha-Est3-RA 1632 CG1257-PA 1..1632 17..1648 8160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est3-RD 1726 CG1257-RD 22..1655 15..1648 8170 100 Plus
alpha-Est3-RB 1834 CG1257-RB 130..1763 15..1648 8170 100 Plus
alpha-Est3-RA 1825 CG1257-RA 121..1754 15..1648 8170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7539563..7540464 1189..288 4510 100 Minus
3R 32079331 3R 7539043..7539503 1648..1188 2305 100 Minus
3R 32079331 3R 7540868..7541134 289..23 1335 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:47:32 has no hits.

BS09977.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:40 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 1..1632 17..1648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:49 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 106..1750 5..1648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:50 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 123..1754 17..1648 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:00 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 119..1750 17..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:22 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est3-RA 123..1754 17..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:22 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7539043..7539501 1190..1648 100 <- Minus
3R 7539563..7540462 290..1189 100 <- Minus
3R 7540868..7541134 23..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:50 Download gff for BS09977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3364765..3365223 1190..1648 100 <- Minus
arm_3R 3365285..3366184 290..1189 100 <- Minus
arm_3R 3366590..3366856 23..289 100   Minus

BS09977.pep Sequence

Translation from 16 to 1647

> BS09977.pep
MESLQVNTTSGPVLGKQCTGVYGDEYVSFERIPYAQPPVGHLRFMAPLPV
EPWSQPLDCTKPGQKPLQFNHYSKQLEGVEDCLYLNVYAKELDSPRPLPL
IVFFFGGGFEKGDPTKELHSPDYFMMRDVVVVTVSYRVGPLGFLSLNDPA
VGVPGNAGLKDQLLAMEWIKENAERFNGDPKNVTAFGESAGAASVHYLML
NPKAEGLFHKAILQSGNVLCSWALCTIKNLPHRLAVNLGMESAEHVTDAM
VLDFLQKLPGEKLVRPYLLSAEEHLDDCVFQFGPMVEPYKTEHCALPNHP
QELLDKAWGNRIPVLMSGTSFEGLLMYARVQMAPYLLTSLKKEPEHMLPL
DVKRNLPQALARHLGQRLQETHFGGNDPSAMSPESLKAYCEYASYKVFWH
PILKTLRSRVKSSSASTYLYRFDFDSPTFNHQRLKYCGDKLRGVAHVDDH
SYLWYGDFSWKLDKHTPEFLTIERMIDMLTSFARTSNPNCKLIQDQLPRA
KEWKPLNSKSALECLNISENIKMMELPELQKLRVWESVCQSTG*

BS09977.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est3-PD 543 CG1257-PD 1..543 1..543 2917 100 Plus
alpha-Est3-PB 543 CG1257-PB 1..543 1..543 2917 100 Plus
alpha-Est3-PA 543 CG1257-PA 1..543 1..543 2917 100 Plus
alpha-Est5-PA 542 CG1089-PA 7..535 1..538 1277 46.2 Plus
alpha-Est5-PB 543 CG1089-PB 8..536 1..538 1277 46.2 Plus