Clone Sequence Records
BS09977.3prime Sequence
871 bp (794 high quality bases) assembled on 2006-04-19
> BS09977.3prime
ATGGTCTAGAAAGCTTCTAGCCCGTTGATTGGCAGACACTTTCCCAGACC
CTAAGCTTCTGCAGCTCCGGCAGCTCCATCATCTTAATGTTCTCCGAGAT
GTTGAGGCACTCCAAAGCGGATTTGCTGTTGAGTGGCTTCCATTCTTTGG
CTCGCGGAAGCTGATCCTGGATGAGCTTGCAATTAGGATTCGATGTCCTC
GCGAAGCTTGTCAACATGTCAATCATCCTCTCGATGGTGAGGAACTCGGG
CGTGTGCTTGTCCAGCTTCCAGGAGAAGTCGCCGTACCACAGGTAGGAGT
GATCATCGACGTGGGCTACGCCCCGCAACTTGTCACCGCAGTACTTCAAA
CGCTGGTGATTGAACGTGGGAGAGTCAAAATCGAATCGATAGAGGTATGT
GGAAGCACTGGAGCTCTTTACACGGGATCTCAGCGTTTTAAGAATGGGAT
GCCAAAACACTTTATAGCTGGCGTACTCACAGTACGCTTTTAAGGACTCT
GGCGACATGGCAGAAGGATCATTACCGCCAAAGTGGGTCTCCTGGAGTCG
CTGGCCCAGATGTCGAGCTAGAGCCTGGGGCAGATTACGCTTCACATCCA
GTGGCAGCATGTGCTCGGGTTCTTTTTTCAGGCTGGTCAGCAAGTACGGA
GCCATTTGGACGCGGGCGTACATCAGCAAGCCCTCGAAGGAAGTGCCGCT
CATCAGTACCGGAATCCTATTTCCCCAGGCCTTGTCCAGCAGTTCCTGCG
GATGATTGGGCAGCGCGCAGTGCTCCGTTTTATATGGCTCCACCATAGGT
CCAAACTGAAAGACGNCATCGTCCAGGTGCTCCTCTGCGCTAAGTAGATA
TGGTCGAACCAGTTTCTCTCC
BS09977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1257-PA | 1632 | alpha-Est3-RA | 778..1632 | 871..17 | 4231 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est3-RD | 1726 | CG1257-RD | 801..1655 | 871..17 | 4249 | 99.8 | Minus |
alpha-Est3-RC | 1878 | CG1257-RC | 953..1807 | 871..17 | 4249 | 99.8 | Minus |
alpha-Est3-RB | 1834 | CG1257-RB | 909..1763 | 871..17 | 4249 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7539043..7539503 | 17..477 | 2305 | 100 | Plus |
3R | 32079331 | 3R | 7539563..7539958 | 476..871 | 1954 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:29:12 has no hits.
BS09977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:33 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1257-PA | 778..1632 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:08 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1257-PA | 778..1632 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:09 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RB | 909..1763 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:42 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RB | 909..1763 | 17..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:42 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7539043..7539501 | 17..475 | 100 | <- | Plus |
3R | 7539563..7539958 | 476..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:09 Download gff for
BS09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3364765..3365223 | 17..475 | 100 | <- | Plus |
arm_3R | 3365285..3365680 | 476..871 | 99 | | Plus |
BS09977.5prime Sequence
941 bp (780 high quality bases) assembled on 2006-04-19
> BS09977.5prime
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATATAAAACGGAGCACTGCGC
GCTGCCCAATCATCCGCAGGAACTGCTGGGACAGGCCTGGG
BS09977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1257-PA | 1632 | alpha-Est3-RA | 1..913 | 17..929 | 4565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est3-RD | 1726 | CG1257-RD | 22..948 | 15..941 | 4590 | 99.8 | Plus |
alpha-Est3-RB | 1834 | CG1257-RB | 130..1056 | 15..941 | 4590 | 99.8 | Plus |
alpha-Est3-RA | 1825 | CG1257-RA | 121..1047 | 15..941 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7539811..7540464 | 941..288 | 3225 | 99.5 | Minus |
3R | 32079331 | 3R | 7540868..7541134 | 289..23 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:41:50 has no hits.
BS09977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:34 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1257-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:10 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1257-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:06 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 110..1047 | 5..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:50 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 110..1047 | 5..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:50 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7540868..7541134 | 23..289 | 100 | | Minus |
3R | 7539811..7540462 | 290..941 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:06 Download gff for
BS09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3365533..3366184 | 290..941 | 99 | <- | Minus |
arm_3R | 3366590..3366856 | 23..289 | 100 | | Minus |
BS09977.complete Sequence
1664 bp assembled on 2007-10-17
GenBank Submission: FJ636514
> BS09977.complete
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATATAAAACGGAGCACTGCGC
GCTGCCCAATCATCCGCAGGAACTGCTGGACAAGGCCTGGGGAAATAGGA
TTCCGGTACTGATGAGCGGCACTTCCTTCGAGGGCTTGCTGATGTACGCC
CGCGTCCAAATGGCTCCGTACTTGCTGACCAGCCTGAAAAAAGAACCCGA
GCACATGCTGCCACTGGATGTGAAGCGTAATCTGCCCCAGGCTCTAGCTC
GACATCTGGGCCAGCGACTCCAGGAGACCCACTTTGGCGGTAATGATCCT
TCTGCCATGTCGCCAGAGTCCTTAAAAGCGTACTGTGAGTACGCCAGCTA
TAAAGTGTTTTGGCATCCCATTCTTAAAACGCTGAGATCCCGTGTAAAGA
GCTCCAGTGCTTCCACATACCTCTATCGATTCGATTTTGACTCTCCCACG
TTCAATCACCAGCGTTTGAAGTACTGCGGTGACAAGTTGCGGGGCGTAGC
CCACGTCGATGATCACTCCTACCTGTGGTACGGCGACTTCTCCTGGAAGC
TGGACAAGCACACGCCCGAGTTCCTCACCATCGAGAGGATGATTGACATG
TTGACAAGCTTCGCGAGGACATCGAATCCTAATTGCAAGCTCATCCAGGA
TCAGCTTCCGCGAGCCAAAGAATGGAAGCCACTCAACAGCAAATCCGCTT
TGGAGTGCCTCAACATCTCGGAGAACATTAAGATGATGGAGCTGCCGGAG
CTGCAGAAGCTTAGGGTCTGGGAAAGTGTCTGCCAATCAACGGGCTAGAA
GCTTTCTAGACCAT
BS09977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est3-RD | 1632 | CG1257-PD | 1..1632 | 17..1648 | 8160 | 100 | Plus |
alpha-Est3-RB | 1632 | CG1257-PB | 1..1632 | 17..1648 | 8160 | 100 | Plus |
alpha-Est3-RA | 1632 | CG1257-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est3-RD | 1726 | CG1257-RD | 22..1655 | 15..1648 | 8170 | 100 | Plus |
alpha-Est3-RB | 1834 | CG1257-RB | 130..1763 | 15..1648 | 8170 | 100 | Plus |
alpha-Est3-RA | 1825 | CG1257-RA | 121..1754 | 15..1648 | 8170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7539563..7540464 | 1189..288 | 4510 | 100 | Minus |
3R | 32079331 | 3R | 7539043..7539503 | 1648..1188 | 2305 | 100 | Minus |
3R | 32079331 | 3R | 7540868..7541134 | 289..23 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:47:32 has no hits.
BS09977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:40 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 1..1632 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:49 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 106..1750 | 5..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:50 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 123..1754 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:00 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 119..1750 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:22 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est3-RA | 123..1754 | 17..1648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:22 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7539043..7539501 | 1190..1648 | 100 | <- | Minus |
3R | 7539563..7540462 | 290..1189 | 100 | <- | Minus |
3R | 7540868..7541134 | 23..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:50 Download gff for
BS09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3364765..3365223 | 1190..1648 | 100 | <- | Minus |
arm_3R | 3365285..3366184 | 290..1189 | 100 | <- | Minus |
arm_3R | 3366590..3366856 | 23..289 | 100 | | Minus |
BS09977.pep Sequence
Translation from 16 to 1647
> BS09977.pep
MESLQVNTTSGPVLGKQCTGVYGDEYVSFERIPYAQPPVGHLRFMAPLPV
EPWSQPLDCTKPGQKPLQFNHYSKQLEGVEDCLYLNVYAKELDSPRPLPL
IVFFFGGGFEKGDPTKELHSPDYFMMRDVVVVTVSYRVGPLGFLSLNDPA
VGVPGNAGLKDQLLAMEWIKENAERFNGDPKNVTAFGESAGAASVHYLML
NPKAEGLFHKAILQSGNVLCSWALCTIKNLPHRLAVNLGMESAEHVTDAM
VLDFLQKLPGEKLVRPYLLSAEEHLDDCVFQFGPMVEPYKTEHCALPNHP
QELLDKAWGNRIPVLMSGTSFEGLLMYARVQMAPYLLTSLKKEPEHMLPL
DVKRNLPQALARHLGQRLQETHFGGNDPSAMSPESLKAYCEYASYKVFWH
PILKTLRSRVKSSSASTYLYRFDFDSPTFNHQRLKYCGDKLRGVAHVDDH
SYLWYGDFSWKLDKHTPEFLTIERMIDMLTSFARTSNPNCKLIQDQLPRA
KEWKPLNSKSALECLNISENIKMMELPELQKLRVWESVCQSTG*
BS09977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est3-PD | 543 | CG1257-PD | 1..543 | 1..543 | 2917 | 100 | Plus |
alpha-Est3-PB | 543 | CG1257-PB | 1..543 | 1..543 | 2917 | 100 | Plus |
alpha-Est3-PA | 543 | CG1257-PA | 1..543 | 1..543 | 2917 | 100 | Plus |
alpha-Est5-PA | 542 | CG1089-PA | 7..535 | 1..538 | 1277 | 46.2 | Plus |
alpha-Est5-PB | 543 | CG1089-PB | 8..536 | 1..538 | 1277 | 46.2 | Plus |