Clone Sequence Records
BS09979.3prime Sequence
924 bp (821 high quality bases) assembled on 2006-04-19
> BS09979.3prime
ATGGTCTAGAAAGCTTTCACGCCTTGGCCCCCGGTATCTTGGACAGAACC
TTGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGC
CACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGA
CAATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTG
GGCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTT
GTACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCA
ACTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCC
TCGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGT
CTGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGA
GCTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTG
CGTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCG
GATCTTGGCTGCCTGCAGCTCGTAGGCCAACTGCGATTCGGCCTTGGCCG
TGTTGATCTCCTGATCGAAATTGGCCTTCTGCAGCTTGTACATCCTGGTG
TTGTCCTCGATTTTCGTGTCCGTCGAGTATTTCACATCCATGGCGCTCTT
TTCGCACTCCGCCTCACGGATACCGGCATCTCGATTGGCCTCCGCCACGC
CGGCATCTGCATCCCGCTTGACCACGGCGGTCTGGGCCTTGCCCAACGAG
GCCAGGTACTGCACATCATCGTAGACGTCCTTGATCGTAAACGAGAGAAT
CTCGATGCCCATACGACCCACGTCCGGTGCGGCCACCTCGCGCACCAAGG
CAGCGATTTGGTCGCGGTCCTTGT
BS09979.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PA | 1317 | Flo-2-RA | 410..1317 | 924..17 | 4515 | 99.8 | Minus |
CG32593-PB | 1278 | Flo-2-RB | 371..1278 | 924..17 | 4515 | 99.8 | Minus |
CG32593-PE | 1317 | Flo-2-RE | 410..1317 | 924..17 | 4515 | 99.8 | Minus |
CG32593-PF | 1278 | Flo-2-RF | 371..1278 | 924..17 | 4515 | 99.8 | Minus |
CG32593-PC | 1206 | Flo-2-RC | 299..1206 | 924..17 | 4515 | 99.8 | Minus |
CG32593-PD | 846 | Flo-2-RD | 1..846 | 862..17 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 909..1818 | 924..15 | 4535 | 99.9 | Minus |
Flo2-RA | 2819 | CG32593-RA | 556..1465 | 924..15 | 4535 | 99.9 | Minus |
Flo2-RH | 2429 | CG32593-RH | 166..1075 | 924..15 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930771..14931314 | 924..381 | 2705 | 99.8 | Minus |
X | 23542271 | X | 14931802..14931985 | 380..197 | 920 | 100 | Minus |
X | 23542271 | X | 14932046..14932229 | 198..15 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:04:17 has no hits.
BS09979.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:37 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-PA | 410..1317 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:15 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PC | 299..1206 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:32:54 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RG | 499..1412 | 7..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:09 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RH | 166..1079 | 7..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:09 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14930771..14931314 | 381..924 | 99 | -> | Minus |
X | 14931802..14931985 | 197..380 | 100 | -> | Minus |
X | 14932048..14932233 | 7..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:32:54 Download gff for
BS09979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14824804..14825347 | 381..924 | 99 | -> | Minus |
arm_X | 14825835..14826018 | 197..380 | 100 | -> | Minus |
arm_X | 14826081..14826266 | 7..196 | 97 | | Minus |
BS09979.5prime Sequence
881 bp (814 high quality bases) assembled on 2006-04-19
> BS09979.5prime
GAAGTTATCAGTCGACATGCCTTCACACACTTGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCANGCAGATCGA
GATTGAGTCGCANGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGAACCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCC
BS09979.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PC | 1206 | Flo-2-RC | 1..865 | 17..881 | 4237 | 99.5 | Plus |
CG32593-PA | 1317 | Flo-2-RA | 275..976 | 180..881 | 3447 | 99.5 | Plus |
CG32593-PB | 1278 | Flo-2-RB | 236..937 | 180..881 | 3447 | 99.5 | Plus |
CG32593-PE | 1317 | Flo-2-RE | 275..976 | 180..881 | 3447 | 99.5 | Plus |
CG32593-PF | 1278 | Flo-2-RF | 236..937 | 180..881 | 3447 | 99.5 | Plus |
CG32593-PD | 846 | Flo-2-RD | 1..505 | 377..881 | 2462 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 611..1475 | 17..881 | 4273 | 99.5 | Plus |
Flo2-RJ | 3212 | CG32593-RJ | 421..1152 | 150..881 | 3623 | 99.6 | Plus |
Flo2-RI | 2240 | CG32593-RI | 382..1113 | 150..881 | 3623 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14931314 | 290..858 | 2808 | 99.5 | Plus |
X | 23542271 | X | 14926601..14926875 | 17..291 | 1360 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:50:54 has no hits.
BS09979.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:38 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-PC | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:16 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PC | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:07 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1475 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:05 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RM | 611..1475 | 17..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:05 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14926601..14926874 | 17..290 | 99 | -> | Plus |
X | 14930747..14931314 | 291..858 | 99 | -> | Plus |
X | 14931802..14931824 | 859..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:07 Download gff for
BS09979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14820634..14820907 | 17..290 | 99 | -> | Plus |
arm_X | 14824780..14825347 | 291..858 | 99 | -> | Plus |
arm_X | 14825835..14825857 | 859..881 | 100 | | Plus |
BS09979.complete Sequence
1238 bp assembled on 2008-08-15
GenBank Submission: FJ636515
> BS09979.complete
GAAGTTATCAGTCGACATGCCTTCACACACTTGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCAT
ACGCAAGATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGG
CGGAGGCGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGC
GATGCAGCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGC
TGAGGTGGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCG
GCAACGATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCG
CCATCGATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAA
GATACCGGGGGCCAAGGCGTGAAAGCTTTCTAGACCAT
BS09979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RJ | 1347 | CG32593-PJ | 275..1347 | 150..1222 | 5365 | 100 | Plus |
Flo2-RI | 1308 | CG32593-PI | 236..1308 | 150..1222 | 5365 | 100 | Plus |
Flo2-RM | 1071 | CG32593-PM | 1..1071 | 152..1222 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 611..1818 | 17..1224 | 6025 | 99.9 | Plus |
Flo2-RJ | 3212 | CG32593-RJ | 421..1495 | 150..1224 | 5375 | 100 | Plus |
Flo2-RI | 2240 | CG32593-RI | 382..1456 | 150..1224 | 5375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14931314 | 290..858 | 2845 | 100 | Plus |
X | 23542271 | X | 14926601..14926875 | 17..291 | 1360 | 99.6 | Plus |
X | 23542271 | X | 14932046..14932229 | 1041..1224 | 920 | 100 | Plus |
X | 23542271 | X | 14931802..14931985 | 859..1042 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:38 has no hits.
BS09979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:09 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1822 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:21 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1815 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:11 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1815 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:18 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RM | 611..1815 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:18 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14926601..14926874 | 17..290 | 99 | -> | Plus |
X | 14930747..14931314 | 291..858 | 100 | -> | Plus |
X | 14931802..14931985 | 859..1042 | 100 | -> | Plus |
X | 14932048..14932226 | 1043..1221 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:21 Download gff for
BS09979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14820634..14820907 | 17..290 | 99 | -> | Plus |
arm_X | 14824780..14825347 | 291..858 | 100 | -> | Plus |
arm_X | 14825835..14826018 | 859..1042 | 100 | -> | Plus |
arm_X | 14826081..14826259 | 1043..1221 | 100 | | Plus |
BS09979.pep Sequence
Translation from 16 to 1221
> BS09979.pep
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
A*
BS09979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-PI | 435 | CG32593-PI | 68..435 | 34..401 | 1758 | 97.6 | Plus |
Flo2-PJ | 448 | CG32593-PJ | 92..448 | 45..401 | 1751 | 99.7 | Plus |
Flo2-PM | 356 | CG32593-PM | 1..356 | 46..401 | 1749 | 100 | Plus |
Flo2-PA | 438 | CG32593-PA | 88..438 | 51..401 | 1696 | 98.9 | Plus |
Flo2-PK | 438 | CG32593-PK | 88..438 | 51..401 | 1696 | 98.9 | Plus |