Clone BS09979 Report

Search the DGRC for BS09979

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptFlo2-RM
Protein status:BS09979.pep: gold
Sequenced Size:1238

Clone Sequence Records

BS09979.3prime Sequence

924 bp (821 high quality bases) assembled on 2006-04-19

> BS09979.3prime
ATGGTCTAGAAAGCTTTCACGCCTTGGCCCCCGGTATCTTGGACAGAACC
TTGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGC
CACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGA
CAATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTG
GGCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTT
GTACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCA
ACTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCC
TCGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGT
CTGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGA
GCTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTG
CGTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCG
GATCTTGGCTGCCTGCAGCTCGTAGGCCAACTGCGATTCGGCCTTGGCCG
TGTTGATCTCCTGATCGAAATTGGCCTTCTGCAGCTTGTACATCCTGGTG
TTGTCCTCGATTTTCGTGTCCGTCGAGTATTTCACATCCATGGCGCTCTT
TTCGCACTCCGCCTCACGGATACCGGCATCTCGATTGGCCTCCGCCACGC
CGGCATCTGCATCCCGCTTGACCACGGCGGTCTGGGCCTTGCCCAACGAG
GCCAGGTACTGCACATCATCGTAGACGTCCTTGATCGTAAACGAGAGAAT
CTCGATGCCCATACGACCCACGTCCGGTGCGGCCACCTCGCGCACCAAGG
CAGCGATTTGGTCGCGGTCCTTGT

BS09979.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PA 1317 Flo-2-RA 410..1317 924..17 4515 99.8 Minus
CG32593-PB 1278 Flo-2-RB 371..1278 924..17 4515 99.8 Minus
CG32593-PE 1317 Flo-2-RE 410..1317 924..17 4515 99.8 Minus
CG32593-PF 1278 Flo-2-RF 371..1278 924..17 4515 99.8 Minus
CG32593-PC 1206 Flo-2-RC 299..1206 924..17 4515 99.8 Minus
CG32593-PD 846 Flo-2-RD 1..846 862..17 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 909..1818 924..15 4535 99.9 Minus
Flo2-RA 2819 CG32593-RA 556..1465 924..15 4535 99.9 Minus
Flo2-RH 2429 CG32593-RH 166..1075 924..15 4535 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930771..14931314 924..381 2705 99.8 Minus
X 23542271 X 14931802..14931985 380..197 920 100 Minus
X 23542271 X 14932046..14932229 198..15 920 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:04:17 has no hits.

BS09979.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:37 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-PA 410..1317 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:15 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PC 299..1206 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:32:54 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RG 499..1412 7..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:09 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RH 166..1079 7..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:09 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14930771..14931314 381..924 99 -> Minus
X 14931802..14931985 197..380 100 -> Minus
X 14932048..14932233 7..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:32:54 Download gff for BS09979.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14824804..14825347 381..924 99 -> Minus
arm_X 14825835..14826018 197..380 100 -> Minus
arm_X 14826081..14826266 7..196 97   Minus

BS09979.5prime Sequence

881 bp (814 high quality bases) assembled on 2006-04-19

> BS09979.5prime
GAAGTTATCAGTCGACATGCCTTCACACACTTGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCANGCAGATCGA
GATTGAGTCGCANGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGAACCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCC

BS09979.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PC 1206 Flo-2-RC 1..865 17..881 4237 99.5 Plus
CG32593-PA 1317 Flo-2-RA 275..976 180..881 3447 99.5 Plus
CG32593-PB 1278 Flo-2-RB 236..937 180..881 3447 99.5 Plus
CG32593-PE 1317 Flo-2-RE 275..976 180..881 3447 99.5 Plus
CG32593-PF 1278 Flo-2-RF 236..937 180..881 3447 99.5 Plus
CG32593-PD 846 Flo-2-RD 1..505 377..881 2462 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 611..1475 17..881 4273 99.5 Plus
Flo2-RJ 3212 CG32593-RJ 421..1152 150..881 3623 99.6 Plus
Flo2-RI 2240 CG32593-RI 382..1113 150..881 3623 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931314 290..858 2808 99.5 Plus
X 23542271 X 14926601..14926875 17..291 1360 99.6 Plus
Blast to na_te.dros performed on 2015-02-04 03:50:54 has no hits.

BS09979.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:38 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-PC 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:16 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PC 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:07 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1475 17..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:05 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RM 611..1475 17..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:05 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14926601..14926874 17..290 99 -> Plus
X 14930747..14931314 291..858 99 -> Plus
X 14931802..14931824 859..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:07 Download gff for BS09979.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14820634..14820907 17..290 99 -> Plus
arm_X 14824780..14825347 291..858 99 -> Plus
arm_X 14825835..14825857 859..881 100   Plus

BS09979.complete Sequence

1238 bp assembled on 2008-08-15

GenBank Submission: FJ636515

> BS09979.complete
GAAGTTATCAGTCGACATGCCTTCACACACTTGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCAT
ACGCAAGATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGG
CGGAGGCGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGC
GATGCAGCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGC
TGAGGTGGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCG
GCAACGATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCG
CCATCGATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAA
GATACCGGGGGCCAAGGCGTGAAAGCTTTCTAGACCAT

BS09979.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RJ 1347 CG32593-PJ 275..1347 150..1222 5365 100 Plus
Flo2-RI 1308 CG32593-PI 236..1308 150..1222 5365 100 Plus
Flo2-RM 1071 CG32593-PM 1..1071 152..1222 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 611..1818 17..1224 6025 99.9 Plus
Flo2-RJ 3212 CG32593-RJ 421..1495 150..1224 5375 100 Plus
Flo2-RI 2240 CG32593-RI 382..1456 150..1224 5375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931314 290..858 2845 100 Plus
X 23542271 X 14926601..14926875 17..291 1360 99.6 Plus
X 23542271 X 14932046..14932229 1041..1224 920 100 Plus
X 23542271 X 14931802..14931985 859..1042 920 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:22:38 has no hits.

BS09979.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:09 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1822 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:21 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1815 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:11 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1815 17..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:18 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RM 611..1815 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:18 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
X 14926601..14926874 17..290 99 -> Plus
X 14930747..14931314 291..858 100 -> Plus
X 14931802..14931985 859..1042 100 -> Plus
X 14932048..14932226 1043..1221 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:21 Download gff for BS09979.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14820634..14820907 17..290 99 -> Plus
arm_X 14824780..14825347 291..858 100 -> Plus
arm_X 14825835..14826018 859..1042 100 -> Plus
arm_X 14826081..14826259 1043..1221 100   Plus

BS09979.pep Sequence

Translation from 16 to 1221

> BS09979.pep
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
A*

BS09979.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PI 435 CG32593-PI 68..435 34..401 1758 97.6 Plus
Flo2-PJ 448 CG32593-PJ 92..448 45..401 1751 99.7 Plus
Flo2-PM 356 CG32593-PM 1..356 46..401 1749 100 Plus
Flo2-PA 438 CG32593-PA 88..438 51..401 1696 98.9 Plus
Flo2-PK 438 CG32593-PK 88..438 51..401 1696 98.9 Plus