Clone BS09980 Report

Search the DGRC for BS09980

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG5447-RA
Protein status:BS09980.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS09980.3prime Sequence

486 bp (485 high quality bases) assembled on 2006-04-19

> BS09980.3prime
ATGGTCTAGTAAGCTTTCACGTTCGCCCCGGACGATCGAATATTGTAATC
TCTATGACGCGAAGTCCCCGATAAGTGGGATCGATCAGCTGCAGTCCCTT
GGTGTTGTAAATGCGTTCATTTTGGGAAGCCACAAATTTGGATATCTTGC
GAAGGGTCTTTTCATAGTGCGTTTCGGAGCACATATAGATCAAGTAGGCC
GTGATGCAGCCAATGCAGCCCTCGCAATAGGTGCCGCAGGATCCCTCCTC
CGCCTCGGCGTAGAACTCGTTTAGCCTATTGATGGTGGCCTCGAAGACGT
GTCTTTCAATCATGCCCTCCAGCTCAGCGGGCAGCCGTGTATGGAACTTG
ACGGAGGTGCCCTCGCTGTAATCGCGCTGGATGAAGACCTTGCTGAAGAC
CACGCCCCCTCCGGTCGCCTGGAGCGCTGTGGGATTACCGCCCGCTGGAG
TAGTGCCACCGCCTTGGGACATGTCGACTGATAACT

BS09980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 456 CG5447-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..587 474..17 2290 100 Minus
CG5447-RA 1392 CG5447-RA 130..587 474..17 2290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 474..311 820 100 Minus
3R 32079331 3R 26453088..26453241 311..158 770 100 Minus
3R 32079331 3R 26453567..26453709 159..17 715 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:42:32 has no hits.

BS09980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:39 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:18 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:54 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 11..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:54 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 11..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:54 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26452859..26453022 311..474 100 -> Minus
3R 26453089..26453241 158..310 100 -> Minus
3R 26453569..26453712 11..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:54 Download gff for BS09980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278581..22278744 311..474 100 -> Minus
arm_3R 22278811..22278963 158..310 100 -> Minus
arm_3R 22279291..22279434 11..157 97   Minus

BS09980.5prime Sequence

486 bp (485 high quality bases) assembled on 2006-04-19

> BS09980.5prime
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGTGAAAGCTTACTAGACC

BS09980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 456 CG5447-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..587 15..472 2290 100 Plus
CG5447-RA 1392 CG5447-RA 130..587 15..472 2290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 15..178 820 100 Plus
3R 32079331 3R 26453088..26453241 178..331 770 100 Plus
3R 32079331 3R 26453567..26453709 330..472 715 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:27:34 has no hits.

BS09980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:40 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:20 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:59 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 15..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:59 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 15..478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:59 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26452859..26453022 15..178 100 -> Plus
3R 26453089..26453241 179..331 100 -> Plus
3R 26453569..26453712 332..478 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:59 Download gff for BS09980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278581..22278744 15..178 100 -> Plus
arm_3R 22278811..22278963 179..331 100 -> Plus
arm_3R 22279291..22279434 332..478 97   Plus

BS09980.complete Sequence

488 bp assembled on 2008-08-15

GenBank Submission: FJ636516

> BS09980.complete
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGTGAAAGCTTACTAGACCAT

BS09980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 495 CG5447-PB 1..456 17..472 2280 100 Plus
CG5447-RA 456 CG5447-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..587 15..472 2290 100 Plus
CG5447-RA 1392 CG5447-RA 130..587 15..472 2290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 15..178 820 100 Plus
3R 32079331 3R 26453088..26453241 178..331 770 100 Plus
3R 32079331 3R 26453567..26453709 330..472 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:03:56 has no hits.

BS09980.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:22 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 131..591 15..478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:58 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 132..586 17..471 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:35 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 133..587 17..471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:04 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 132..586 17..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:04 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26452861..26453022 17..178 100 -> Plus
3R 26453089..26453241 179..331 100 -> Plus
3R 26453569..26453708 332..471 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:58 Download gff for BS09980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278583..22278744 17..178 100 -> Plus
arm_3R 22278811..22278963 179..331 100 -> Plus
arm_3R 22279291..22279430 332..471 100   Plus

BS09980.pep Sequence

Translation from 16 to 471

> BS09980.pep
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
T*

BS09980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 151 CG5447-PA 1..151 1..151 797 100 Plus
CG5447-PB 164 CG5447-PB 1..151 1..151 797 100 Plus