Clone Sequence Records
BS09980.3prime Sequence
486 bp (485 high quality bases) assembled on 2006-04-19
> BS09980.3prime
ATGGTCTAGTAAGCTTTCACGTTCGCCCCGGACGATCGAATATTGTAATC
TCTATGACGCGAAGTCCCCGATAAGTGGGATCGATCAGCTGCAGTCCCTT
GGTGTTGTAAATGCGTTCATTTTGGGAAGCCACAAATTTGGATATCTTGC
GAAGGGTCTTTTCATAGTGCGTTTCGGAGCACATATAGATCAAGTAGGCC
GTGATGCAGCCAATGCAGCCCTCGCAATAGGTGCCGCAGGATCCCTCCTC
CGCCTCGGCGTAGAACTCGTTTAGCCTATTGATGGTGGCCTCGAAGACGT
GTCTTTCAATCATGCCCTCCAGCTCAGCGGGCAGCCGTGTATGGAACTTG
ACGGAGGTGCCCTCGCTGTAATCGCGCTGGATGAAGACCTTGCTGAAGAC
CACGCCCCCTCCGGTCGCCTGGAGCGCTGTGGGATTACCGCCCGCTGGAG
TAGTGCCACCGCCTTGGGACATGTCGACTGATAACT
BS09980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PA | 456 | CG5447-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..587 | 474..17 | 2290 | 100 | Minus |
CG5447-RA | 1392 | CG5447-RA | 130..587 | 474..17 | 2290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 474..311 | 820 | 100 | Minus |
3R | 32079331 | 3R | 26453088..26453241 | 311..158 | 770 | 100 | Minus |
3R | 32079331 | 3R | 26453567..26453709 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:42:32 has no hits.
BS09980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:39 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:18 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:54 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 11..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:54 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 11..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:54 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26452859..26453022 | 311..474 | 100 | -> | Minus |
3R | 26453089..26453241 | 158..310 | 100 | -> | Minus |
3R | 26453569..26453712 | 11..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:54 Download gff for
BS09980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22278581..22278744 | 311..474 | 100 | -> | Minus |
arm_3R | 22278811..22278963 | 158..310 | 100 | -> | Minus |
arm_3R | 22279291..22279434 | 11..157 | 97 | | Minus |
BS09980.5prime Sequence
486 bp (485 high quality bases) assembled on 2006-04-19
> BS09980.5prime
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGTGAAAGCTTACTAGACC
BS09980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PA | 456 | CG5447-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..587 | 15..472 | 2290 | 100 | Plus |
CG5447-RA | 1392 | CG5447-RA | 130..587 | 15..472 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 15..178 | 820 | 100 | Plus |
3R | 32079331 | 3R | 26453088..26453241 | 178..331 | 770 | 100 | Plus |
3R | 32079331 | 3R | 26453567..26453709 | 330..472 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:27:34 has no hits.
BS09980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:40 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:20 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:59 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 15..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:59 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 15..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:59 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26452859..26453022 | 15..178 | 100 | -> | Plus |
3R | 26453089..26453241 | 179..331 | 100 | -> | Plus |
3R | 26453569..26453712 | 332..478 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:59 Download gff for
BS09980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22278581..22278744 | 15..178 | 100 | -> | Plus |
arm_3R | 22278811..22278963 | 179..331 | 100 | -> | Plus |
arm_3R | 22279291..22279434 | 332..478 | 97 | | Plus |
BS09980.complete Sequence
488 bp assembled on 2008-08-15
GenBank Submission: FJ636516
> BS09980.complete
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGTGAAAGCTTACTAGACCAT
BS09980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 495 | CG5447-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
CG5447-RA | 456 | CG5447-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..587 | 15..472 | 2290 | 100 | Plus |
CG5447-RA | 1392 | CG5447-RA | 130..587 | 15..472 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 15..178 | 820 | 100 | Plus |
3R | 32079331 | 3R | 26453088..26453241 | 178..331 | 770 | 100 | Plus |
3R | 32079331 | 3R | 26453567..26453709 | 330..472 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:03:56 has no hits.
BS09980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:22 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 131..591 | 15..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:58 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 132..586 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:35 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 133..587 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:04 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 132..586 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:04 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26452861..26453022 | 17..178 | 100 | -> | Plus |
3R | 26453089..26453241 | 179..331 | 100 | -> | Plus |
3R | 26453569..26453708 | 332..471 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:58 Download gff for
BS09980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22278583..22278744 | 17..178 | 100 | -> | Plus |
arm_3R | 22278811..22278963 | 179..331 | 100 | -> | Plus |
arm_3R | 22279291..22279430 | 332..471 | 100 | | Plus |
BS09980.pep Sequence
Translation from 16 to 471
> BS09980.pep
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
T*
BS09980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PA | 151 | CG5447-PA | 1..151 | 1..151 | 797 | 100 | Plus |
CG5447-PB | 164 | CG5447-PB | 1..151 | 1..151 | 797 | 100 | Plus |