Clone Sequence Records
BS09984.3prime Sequence
934 bp (854 high quality bases) assembled on 2006-04-19
> BS09984.3prime
ATGGTCTAGAAAGCTTCTAAGCCAGAGTGGCGAAACCCACACGGTTCTGA
CCAAAATCGAATTCGGAGTAGTATTGACCCAGGAAAACGTCGCCCAGGAT
CCAGAAGCCCGTTCCGATATCGGTGAAGGTGGACATGCAGGTGGTGTAGT
TGCCCTCGGTGTAGGTTTGGATGTAAACCGAGGGGGGCAGGTAGAAGTTG
GTGCCACCGATGTTGATGGTCAGAACGGGCAGGGAGGAAACAGTGGAGCA
GGGCACGTAGTAATCACCCTGGATGGGAACGCCTCCAATCAGGTTGTTCA
GCTGAATGTAGGCTGCCGAAGGAGCGGCGATCAGGGAGGTTCCAGTATCG
GCGATTGCCTGGCATCCGCTGGAGATCACGGTTCCATTCCAGGTGATGTT
GTTCACAGCGAACTGCCAGTAGCCCTGCTGAGTGACGGGTGTGTAGGTCA
TTTCACCGGCGATGAGGTTCTGGTCGGTTCCACCCAGGGTCAGTTGGCCA
CCATCCACGGCAGAGCCATTCCGAGCCAGGTAGAAACCAAAGACTGGCTC
GTCGATAAGACCTTCCTCGTAGAGATTGTAGAACGGCGGCACTACGTTGT
CCTCGGCAATTTGCTGGTAACCCATGCCCAGGATGCCATCGAACGCCACG
TCGGTGAAGCTGGCTCCCGGCTGGGAAACCGCCTCTCCGAAGGTCTGGTT
CGCGATGGCCAGGCCGTTGATGGTCACCGTATCTATGGCCAGATAGCCGG
AGACACTGCCGGTTCCGTACTGGATGGAGAAGTTTTGGCCGCTGGACACG
AAGGTGGAGGAAGCACTGGAGTTATACTGGTTGTGCTGCTGGCAGGCCAC
ATCCGTGGCCAGGCACTGGGCAGATGGCACCCACAGGTTGGGCGAACCCG
TGTCAAAGACCACCTTGAAGTACTGCTCCGGGGT
BS09984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-PA | 1218 | CG33128-RA | 301..1218 | 934..17 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-RA | 1387 | CG33128-RA | 377..1300 | 934..10 | 4585 | 99.8 | Minus |
Bace-RB | 1415 | CG13095-RB | 361..506 | 835..690 | 205 | 76.9 | Minus |
Bace-RA | 1200 | CG13095-RA | 361..506 | 835..690 | 205 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1494446..1495364 | 934..16 | 4580 | 99.9 | Minus |
2L | 23513712 | 2L | 8495802..8495947 | 690..835 | 205 | 76 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:28:59 has no hits.
BS09984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:48 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-PA | 301..1218 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:32 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-PA | 301..1218 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:08 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 377..1303 | 4..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:41 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 377..1303 | 4..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:41 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1494446..1495372 | 4..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:08 Download gff for
BS09984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1494446..1495372 | 4..934 | 99 | | Minus |
BS09984.5prime Sequence
948 bp (891 high quality bases) assembled on 2006-04-19
> BS09984.5prime
GAAGTTATCAGTCGACATGCTGAAGTGGCTGGTCCTGTTGACCATCTTGG
CGTTGGTCAGTGCTGAGATCCACCGCATCAAGATCCACAAGAACCAGGAT
CACAAGAACACCCGGCAGCATCGCAAGCAGGCTATCCAGGCTCTGAAGCT
GAAGTACCACCAACAGGACGTAGTCATCATTTACGACGATGGAGTACCGA
TTTACATGCAGCCCGACTACGGATACGATTATCCCAGCCAGACCTCGGTT
GACTACACATCCGAGGAGCTGGGCAACTCGATGAACATGTACTACTACGG
CCTGATTGGCATTGGCACCCCGGAGCAGTACTTCAAGGTGGTCTTTGACA
CGGGTTCGGCCAACCTGTGGGTGCCATCTGCCCAGTGCCTGGCCACGGAT
GTGGCCTGCCAGCAGCACAACCAGTATAACTCCAGTGCTTCCTCCACCTT
CGTGTCCAGCGGCCAAAACTTCTCCATCCAGTACGGAACCGGCAGTGTCT
CCGGCTATCTGGCCATAGATACGGTGACCATCAACGGCCTGGCCATCGCG
AACCAGACCTTCGGAGAGGCGGTTTCCCAGCCGGGAGCCAGCTTCACCGA
CGTGGCGTTCGATGGCATCCTGGGCATGGGTTACCAGCAAATTGCCGAGG
ACAACGTAGTGCCGCCGTTCTACAATCTCTACGAGGAAGGTCTTATCGAC
GAGCCAGTCTTTGGTTTCTACCTGGCTCGGAATGGCTCTGCCGTGGATGG
TGGCCAACTGACCCTGGGTGGAACCGACCAGAACCTCATCGCCGGTGAAA
TGACCTACACACCCGTCACTCAGCAGGGCTACTGGCAGTTCGCTGTGAAC
ACATCACCTGGAATGGAACCGTGATCTCCAGCGGATGCCAGGCAATCGCC
GATACTGGAACCTCCCTGATCGCCGCTCCTTCGGCAGCCTACATTCAG
BS09984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-PA | 1218 | CG33128-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
CG33128-PA | 1218 | CG33128-RA | 836..933 | 851..948 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-RA | 1387 | CG33128-RA | 77..1009 | 17..948 | 4640 | 99.9 | Plus |
Bace-RB | 1415 | CG13095-RB | 361..506 | 416..561 | 205 | 76.9 | Plus |
Bace-RA | 1200 | CG13095-RA | 361..506 | 416..561 | 205 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1494146..1495078 | 17..948 | 4615 | 99.9 | Plus |
2L | 23513712 | 2L | 8495802..8495947 | 561..416 | 205 | 76 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:43:17 has no hits.
BS09984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:48 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-PA | 1..933 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:33 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-PA | 1..933 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:25 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 71..1009 | 7..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:02 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 71..1009 | 7..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:02 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1494140..1495078 | 7..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:25 Download gff for
BS09984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1494140..1495078 | 7..948 | 99 | | Plus |
BS09984.complete Sequence
1250 bp (1250 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636517
> BS09984.complete
GAAGTTATCAGTCGACATGCTGAAGTGGCTGGTCCTGTTGACCATCTTGG
CGTTGGTCAGTGCTGAGATCCACCGCATCAAGATCCACAAGAACCAGGAT
CACAAGAACACCCGGCAGCATCGCAAGCAGGCTATCCAGGCTCTGAAGCT
GAAGTACCACCAACAGGACGTAGTCATCATTTACGACGATGGAGTACCGA
TTTACATGCAGCCCGACTACGGATACGATTATCCCAGCCAGACCTCGGTT
GACTACACATCCGAGGAGCTGGGCAACTCGATGAACATGTACTACTACGG
CCTGATTGGCATTGGCACCCCGGAGCAGTACTTCAAGGTGGTCTTTGACA
CGGGTTCGGCCAACCTGTGGGTGCCATCTGCCCAGTGCCTGGCCACGGAT
GTGGCCTGCCAGCAGCACAACCAGTATAACTCCAGTGCTTCCTCCACCTT
CGTGTCCAGCGGCCAAAACTTCTCCATCCAGTACGGAACCGGCAGTGTCT
CCGGCTATCTGGCCATAGATACGGTGACCATCAACGGCCTGGCCATCGCG
AACCAGACCTTCGGAGAGGCGGTTTCCCAGCCGGGAGCCAGCTTCACCGA
CGTGGCGTTCGATGGCATCCTGGGCATGGGTTACCAGCAAATTGCCGAGG
ACAACGTAGTGCCGCCGTTCTACAATCTCTACGAGGAAGGTCTTATCGAC
GAGCCAGTCTTTGGTTTCTACCTGGCTCGGAATGGCTCTGCCGTGGATGG
TGGCCAACTGACCCTGGGTGGAACCGACCAGAACCTCATCGCCGGTGAAA
TGACCTACACACCCGTCACTCAGCAGGGCTACTGGCAGTTCGCTGTGAAC
AACATCACCTGGAATGGAACCGTGATCTCCAGCGGATGCCAGGCAATCGC
CGATACTGGAACCTCCCTGATCGCCGCTCCTTCGGCAGCCTACATTCAGC
TGAACAACCTGATTGGAGGCGTTCCCATCCAGGGTGATTACTACGTGCCC
TGCTCCACTGTTTCCTCCCTGCCCGTTCTGACCATCAACATCGGTGGCAC
CAACTTCTACCTGCCCCCCTCGGTTTACATCCAAACCTACACCGAGGGCA
ACTACACCACCTGCATGTCCACCTTCACCGATATCGGAACGGGCTTCTGG
ATCCTGGGCGACGTTTTCCTGGGTCAATACTACTCCGAATTCGATTTTGG
TCAGAACCGTGTGGGTTTCGCCACTCTGGCTTAGAAGCTTTCTAGACCAT
BS09984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-RA | 1218 | CG33128-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Bace-RB | 1119 | CG13095-PB | 322..467 | 416..561 | 205 | 76 | Plus |
Bace-RA | 1119 | CG13095-PA | 322..467 | 416..561 | 205 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-RA | 1387 | CG33128-RA | 77..1295 | 17..1235 | 6095 | 100 | Plus |
Bace-RB | 1415 | CG13095-RB | 361..506 | 416..561 | 205 | 76 | Plus |
Bace-RA | 1200 | CG13095-RA | 361..506 | 416..561 | 205 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1494146..1495364 | 17..1235 | 6095 | 100 | Plus |
2L | 23513712 | 2L | 8495802..8495947 | 561..416 | 205 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:59 has no hits.
BS09984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:55 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:45 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 51..1283 | 7..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:03 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 77..1294 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:55 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 51..1283 | 7..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:11 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33128-RA | 77..1294 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:11 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1494146..1495363 | 17..1234 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:03 Download gff for
BS09984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1494146..1495363 | 17..1234 | 100 | | Plus |
BS09984.pep Sequence
Translation from 16 to 1233
> BS09984.pep
MLKWLVLLTILALVSAEIHRIKIHKNQDHKNTRQHRKQAIQALKLKYHQQ
DVVIIYDDGVPIYMQPDYGYDYPSQTSVDYTSEELGNSMNMYYYGLIGIG
TPEQYFKVVFDTGSANLWVPSAQCLATDVACQQHNQYNSSASSTFVSSGQ
NFSIQYGTGSVSGYLAIDTVTINGLAIANQTFGEAVSQPGASFTDVAFDG
ILGMGYQQIAEDNVVPPFYNLYEEGLIDEPVFGFYLARNGSAVDGGQLTL
GGTDQNLIAGEMTYTPVTQQGYWQFAVNNITWNGTVISSGCQAIADTGTS
LIAAPSAAYIQLNNLIGGVPIQGDYYVPCSTVSSLPVLTINIGGTNFYLP
PSVYIQTYTEGNYTTCMSTFTDIGTGFWILGDVFLGQYYSEFDFGQNRVG
FATLA*
BS09984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33128-PA | 405 | CG33128-PA | 1..405 | 1..405 | 2140 | 100 | Plus |
Bace-PB | 372 | CG13095-PB | 7..372 | 6..405 | 1034 | 52 | Plus |
Bace-PA | 372 | CG13095-PA | 7..372 | 6..405 | 1034 | 52 | Plus |
CG17134-PA | 391 | CG17134-PA | 1..389 | 1..405 | 1005 | 49.3 | Plus |
CG5863-PA | 395 | CG5863-PA | 70..395 | 82..405 | 850 | 50.9 | Plus |