Clone BS09984 Report

Search the DGRC for BS09984

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG33128-RA
Protein status:BS09984.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09984.3prime Sequence

934 bp (854 high quality bases) assembled on 2006-04-19

> BS09984.3prime
ATGGTCTAGAAAGCTTCTAAGCCAGAGTGGCGAAACCCACACGGTTCTGA
CCAAAATCGAATTCGGAGTAGTATTGACCCAGGAAAACGTCGCCCAGGAT
CCAGAAGCCCGTTCCGATATCGGTGAAGGTGGACATGCAGGTGGTGTAGT
TGCCCTCGGTGTAGGTTTGGATGTAAACCGAGGGGGGCAGGTAGAAGTTG
GTGCCACCGATGTTGATGGTCAGAACGGGCAGGGAGGAAACAGTGGAGCA
GGGCACGTAGTAATCACCCTGGATGGGAACGCCTCCAATCAGGTTGTTCA
GCTGAATGTAGGCTGCCGAAGGAGCGGCGATCAGGGAGGTTCCAGTATCG
GCGATTGCCTGGCATCCGCTGGAGATCACGGTTCCATTCCAGGTGATGTT
GTTCACAGCGAACTGCCAGTAGCCCTGCTGAGTGACGGGTGTGTAGGTCA
TTTCACCGGCGATGAGGTTCTGGTCGGTTCCACCCAGGGTCAGTTGGCCA
CCATCCACGGCAGAGCCATTCCGAGCCAGGTAGAAACCAAAGACTGGCTC
GTCGATAAGACCTTCCTCGTAGAGATTGTAGAACGGCGGCACTACGTTGT
CCTCGGCAATTTGCTGGTAACCCATGCCCAGGATGCCATCGAACGCCACG
TCGGTGAAGCTGGCTCCCGGCTGGGAAACCGCCTCTCCGAAGGTCTGGTT
CGCGATGGCCAGGCCGTTGATGGTCACCGTATCTATGGCCAGATAGCCGG
AGACACTGCCGGTTCCGTACTGGATGGAGAAGTTTTGGCCGCTGGACACG
AAGGTGGAGGAAGCACTGGAGTTATACTGGTTGTGCTGCTGGCAGGCCAC
ATCCGTGGCCAGGCACTGGGCAGATGGCACCCACAGGTTGGGCGAACCCG
TGTCAAAGACCACCTTGAAGTACTGCTCCGGGGT

BS09984.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-PA 1218 CG33128-RA 301..1218 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-RA 1387 CG33128-RA 377..1300 934..10 4585 99.8 Minus
Bace-RB 1415 CG13095-RB 361..506 835..690 205 76.9 Minus
Bace-RA 1200 CG13095-RA 361..506 835..690 205 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1494446..1495364 934..16 4580 99.9 Minus
2L 23513712 2L 8495802..8495947 690..835 205 76 Plus
Blast to na_te.dros performed on 2015-01-30 17:28:59 has no hits.

BS09984.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:48 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-PA 301..1218 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:32 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-PA 301..1218 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:36:08 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 377..1303 4..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:41 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 377..1303 4..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:41 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1494446..1495372 4..934 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:36:08 Download gff for BS09984.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1494446..1495372 4..934 99   Minus

BS09984.5prime Sequence

948 bp (891 high quality bases) assembled on 2006-04-19

> BS09984.5prime
GAAGTTATCAGTCGACATGCTGAAGTGGCTGGTCCTGTTGACCATCTTGG
CGTTGGTCAGTGCTGAGATCCACCGCATCAAGATCCACAAGAACCAGGAT
CACAAGAACACCCGGCAGCATCGCAAGCAGGCTATCCAGGCTCTGAAGCT
GAAGTACCACCAACAGGACGTAGTCATCATTTACGACGATGGAGTACCGA
TTTACATGCAGCCCGACTACGGATACGATTATCCCAGCCAGACCTCGGTT
GACTACACATCCGAGGAGCTGGGCAACTCGATGAACATGTACTACTACGG
CCTGATTGGCATTGGCACCCCGGAGCAGTACTTCAAGGTGGTCTTTGACA
CGGGTTCGGCCAACCTGTGGGTGCCATCTGCCCAGTGCCTGGCCACGGAT
GTGGCCTGCCAGCAGCACAACCAGTATAACTCCAGTGCTTCCTCCACCTT
CGTGTCCAGCGGCCAAAACTTCTCCATCCAGTACGGAACCGGCAGTGTCT
CCGGCTATCTGGCCATAGATACGGTGACCATCAACGGCCTGGCCATCGCG
AACCAGACCTTCGGAGAGGCGGTTTCCCAGCCGGGAGCCAGCTTCACCGA
CGTGGCGTTCGATGGCATCCTGGGCATGGGTTACCAGCAAATTGCCGAGG
ACAACGTAGTGCCGCCGTTCTACAATCTCTACGAGGAAGGTCTTATCGAC
GAGCCAGTCTTTGGTTTCTACCTGGCTCGGAATGGCTCTGCCGTGGATGG
TGGCCAACTGACCCTGGGTGGAACCGACCAGAACCTCATCGCCGGTGAAA
TGACCTACACACCCGTCACTCAGCAGGGCTACTGGCAGTTCGCTGTGAAC
ACATCACCTGGAATGGAACCGTGATCTCCAGCGGATGCCAGGCAATCGCC
GATACTGGAACCTCCCTGATCGCCGCTCCTTCGGCAGCCTACATTCAG

BS09984.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-PA 1218 CG33128-RA 1..835 17..851 4175 100 Plus
CG33128-PA 1218 CG33128-RA 836..933 851..948 490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-RA 1387 CG33128-RA 77..1009 17..948 4640 99.9 Plus
Bace-RB 1415 CG13095-RB 361..506 416..561 205 76.9 Plus
Bace-RA 1200 CG13095-RA 361..506 416..561 205 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1494146..1495078 17..948 4615 99.9 Plus
2L 23513712 2L 8495802..8495947 561..416 205 76 Minus
Blast to na_te.dros performed on 2015-02-02 12:43:17 has no hits.

BS09984.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:48 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-PA 1..933 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:33 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-PA 1..933 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:25 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 71..1009 7..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:02 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 71..1009 7..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:02 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1494140..1495078 7..948 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:25 Download gff for BS09984.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1494140..1495078 7..948 99   Plus

BS09984.complete Sequence

1250 bp (1250 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636517

> BS09984.complete
GAAGTTATCAGTCGACATGCTGAAGTGGCTGGTCCTGTTGACCATCTTGG
CGTTGGTCAGTGCTGAGATCCACCGCATCAAGATCCACAAGAACCAGGAT
CACAAGAACACCCGGCAGCATCGCAAGCAGGCTATCCAGGCTCTGAAGCT
GAAGTACCACCAACAGGACGTAGTCATCATTTACGACGATGGAGTACCGA
TTTACATGCAGCCCGACTACGGATACGATTATCCCAGCCAGACCTCGGTT
GACTACACATCCGAGGAGCTGGGCAACTCGATGAACATGTACTACTACGG
CCTGATTGGCATTGGCACCCCGGAGCAGTACTTCAAGGTGGTCTTTGACA
CGGGTTCGGCCAACCTGTGGGTGCCATCTGCCCAGTGCCTGGCCACGGAT
GTGGCCTGCCAGCAGCACAACCAGTATAACTCCAGTGCTTCCTCCACCTT
CGTGTCCAGCGGCCAAAACTTCTCCATCCAGTACGGAACCGGCAGTGTCT
CCGGCTATCTGGCCATAGATACGGTGACCATCAACGGCCTGGCCATCGCG
AACCAGACCTTCGGAGAGGCGGTTTCCCAGCCGGGAGCCAGCTTCACCGA
CGTGGCGTTCGATGGCATCCTGGGCATGGGTTACCAGCAAATTGCCGAGG
ACAACGTAGTGCCGCCGTTCTACAATCTCTACGAGGAAGGTCTTATCGAC
GAGCCAGTCTTTGGTTTCTACCTGGCTCGGAATGGCTCTGCCGTGGATGG
TGGCCAACTGACCCTGGGTGGAACCGACCAGAACCTCATCGCCGGTGAAA
TGACCTACACACCCGTCACTCAGCAGGGCTACTGGCAGTTCGCTGTGAAC
AACATCACCTGGAATGGAACCGTGATCTCCAGCGGATGCCAGGCAATCGC
CGATACTGGAACCTCCCTGATCGCCGCTCCTTCGGCAGCCTACATTCAGC
TGAACAACCTGATTGGAGGCGTTCCCATCCAGGGTGATTACTACGTGCCC
TGCTCCACTGTTTCCTCCCTGCCCGTTCTGACCATCAACATCGGTGGCAC
CAACTTCTACCTGCCCCCCTCGGTTTACATCCAAACCTACACCGAGGGCA
ACTACACCACCTGCATGTCCACCTTCACCGATATCGGAACGGGCTTCTGG
ATCCTGGGCGACGTTTTCCTGGGTCAATACTACTCCGAATTCGATTTTGG
TCAGAACCGTGTGGGTTTCGCCACTCTGGCTTAGAAGCTTTCTAGACCAT

BS09984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-RA 1218 CG33128-PA 1..1218 17..1234 6090 100 Plus
Bace-RB 1119 CG13095-PB 322..467 416..561 205 76 Plus
Bace-RA 1119 CG13095-PA 322..467 416..561 205 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-RA 1387 CG33128-RA 77..1295 17..1235 6095 100 Plus
Bace-RB 1415 CG13095-RB 361..506 416..561 205 76 Plus
Bace-RA 1200 CG13095-RA 361..506 416..561 205 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1494146..1495364 17..1235 6095 100 Plus
2L 23513712 2L 8495802..8495947 561..416 205 76 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:59 has no hits.

BS09984.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:55 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:45 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 51..1283 7..1247 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:03 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 77..1294 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:55 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 51..1283 7..1247 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:11 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 77..1294 17..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:11 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1494146..1495363 17..1234 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:03 Download gff for BS09984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1494146..1495363 17..1234 100   Plus

BS09984.pep Sequence

Translation from 16 to 1233

> BS09984.pep
MLKWLVLLTILALVSAEIHRIKIHKNQDHKNTRQHRKQAIQALKLKYHQQ
DVVIIYDDGVPIYMQPDYGYDYPSQTSVDYTSEELGNSMNMYYYGLIGIG
TPEQYFKVVFDTGSANLWVPSAQCLATDVACQQHNQYNSSASSTFVSSGQ
NFSIQYGTGSVSGYLAIDTVTINGLAIANQTFGEAVSQPGASFTDVAFDG
ILGMGYQQIAEDNVVPPFYNLYEEGLIDEPVFGFYLARNGSAVDGGQLTL
GGTDQNLIAGEMTYTPVTQQGYWQFAVNNITWNGTVISSGCQAIADTGTS
LIAAPSAAYIQLNNLIGGVPIQGDYYVPCSTVSSLPVLTINIGGTNFYLP
PSVYIQTYTEGNYTTCMSTFTDIGTGFWILGDVFLGQYYSEFDFGQNRVG
FATLA*

BS09984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-PA 405 CG33128-PA 1..405 1..405 2140 100 Plus
Bace-PB 372 CG13095-PB 7..372 6..405 1034 52 Plus
Bace-PA 372 CG13095-PA 7..372 6..405 1034 52 Plus
CG17134-PA 391 CG17134-PA 1..389 1..405 1005 49.3 Plus
CG5863-PA 395 CG5863-PA 70..395 82..405 850 50.9 Plus