Clone Sequence Records
BS09985.3prime Sequence
925 bp (838 high quality bases) assembled on 2006-04-19
> BS09985.3prime
ATGGTCTAGAAAGCTTTTACTTCATAATACTAGAAAGGCTGGTGTAACCA
CTGTTGGGCTGGGCGGGCTCCTGATGCCGACCGCACCGTCCACAGCAGCA
AATGCTCTTCACCACGTCAAGGAAGCTCGTCTGGTCGAAGTCGTCCAGGT
CGGTCATGAAGACACCAGAACTAATGTCCTCTGCAGTGCGCGTTCCGACA
AATGCCTTGAGATCGGTGGTGGGAAAGCCATCCTTGTAATACGCCTTTAT
CGTGTCGTAGGCATCCATTATGACGGCAATGAACAGCGACAGGACCACAT
AAATGTACAAGGATATGAACGAGTACAAGTAGATCTGGCAGAACCACCAC
AGCCAGGTGGCCTTGCTGGAAAGCGTGGCAAAGGTGGCGAACATATCATC
ACCGTTTATCAGCGCAAACAAGCACTCTGACGTTGTAGCCAGCGATCGGA
ACTTCATGTGATAGGGTCCCAAGATCAGCCAGCCGCAAAACACAAATCCA
GCATAGATCAGCAAGGCGGCGATAAGGAAGCGCAGAATCTTTGGTGCCGC
CTTTTTCAGCGTCAGTATCACAACGTTGTAGGTTTTGAAGAAGCCGAGGT
AGCGCAGCACTCCGAACCAAACAAGCAGGTTGCCAATTCCCAGAAAAAGC
GAGCAGGTATCCCATTGGTCCACCACCAAGTACCTTCCCTCGATTTGCTC
TTTTAGAGCTGATCCAATGATCAAAAGGACGTCATTGAAAATGATCATGA
TGTACCAAAAGTTAACGAATTCCAGTCGGCCGTCAAAGCTCAGCTCCTTG
CCGAATTGCGAACGGAAAAAGTTGACAGTTGTACATCTCAGCAGATATGC
TCTCCACAGAGCCCTTGTACAGAGTGCAAAGGATAGTGCGCATGTTAGTA
GGACGAATATATTGAGTACGCTTCG
BS09985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8743-PA | 1959 | CG8743-RA | 1051..1959 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 1311..2219 | 925..17 | 4530 | 99.9 | Minus |
| CG42638-RA | 3070 | CG42638-RA | 1311..2219 | 925..17 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19715269..19716008 | 17..756 | 3700 | 100 | Plus |
| 3L | 28110227 | 3L | 19746685..19747424 | 17..756 | 3700 | 100 | Plus |
| 3L | 28110227 | 3L | 19747562..19747733 | 754..925 | 845 | 99.4 | Plus |
| 3L | 28110227 | 3L | 19716146..19716317 | 754..925 | 845 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:47:14 has no hits.
BS09985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:49 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1051..1959 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:34 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1051..1959 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:33:00 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 1311..2219 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:31 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 1311..2219 | 17..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:31 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19715269..19716007 | 17..755 | 100 | <- | Plus |
| 3L | 19716148..19716317 | 756..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:33:00 Download gff for
BS09985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19708369..19709107 | 17..755 | 100 | <- | Plus |
| arm_3L | 19709248..19709417 | 756..925 | 99 | | Plus |
BS09985.5prime Sequence
950 bp (809 high quality bases) assembled on 2006-04-19
> BS09985.5prime
GAAGTTATCAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTC
CGGCCGTCAAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAG
CAGTCGCCGGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCG
CCAAGTGCAGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCA
TATCCGCCGGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAG
CAGCCCGAATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAAT
GCGCAGGAAGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGG
CCAAGCGGAAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTT
CTGGTGACGATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACAT
CAACTACACGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCG
GCTGGGATTCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCC
TTTGCTCTATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGT
CAATGGCTACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGA
CGCCCAATAACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGA
GAGGGCACCATATTTGGCTTTAATGAGTCCTACATTTTCGATCCACATAT
CGACGAGGTGTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGG
AGAATTACCTCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTTGTC
TCCGCACAGTTGACGTTCAAGATAAAGACGGTTAATTTTCAGGCAAATGG
TGGACCTCTTTCTGCTCCTGATTGTTTTCGGTTTGACATTTCCATAACGT
BS09985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8743-PA | 1959 | CG8743-RA | 1..934 | 17..950 | 4620 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..1194 | 12..950 | 4650 | 99.7 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..1194 | 12..950 | 4650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716434..19717000 | 950..384 | 2805 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19747850..19748416 | 950..384 | 2805 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 385..12 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 385..12 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:32:32 has no hits.
BS09985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:51 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:35 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:28 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 250..1194 | 3..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:27 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 250..1194 | 3..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:27 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19716434..19716998 | 386..950 | 99 | <- | Minus |
| 3L | 19717700..19718079 | 3..385 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:28 Download gff for
BS09985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19709534..19710098 | 386..950 | 99 | <- | Minus |
| arm_3L | 19710800..19711179 | 3..385 | 98 | | Minus |
BS09985.complete Sequence
1991 bp assembled on 2010-05-10
GenBank Submission: KX805125
> BS09985.complete
GAAGTTATCAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTC
CGGCCGTCAAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAG
CAGTCGCCGGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCG
CCAAGTGCAGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCA
TATCCGCCGGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAG
CAGCCCGAATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAAT
GCGCAGGAAGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGG
CCAAGCGGAAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTT
CTGGTGACGATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACAT
CAACTACACGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCG
GCTGGGATTCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCC
TTTGCTCTATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGT
CAATGGCTACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGA
CGCCCAATAACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGA
GAGGGCACCATATTTGGCTTTAATGAGTCCTACATTTTCGATCCACATAT
CGACGAGGTGTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGG
AGAATTACCTCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTTGTC
TCCGCACAGTTGACGTTCAAGATAAAGACGGTTAATTTCAAGGCAAATGG
TGGACCTCTTTCTGCTCCTGATTGTTTTCGGTTTGACATTTCCATAACGT
TTAACAACCGAGACCATGACGGGCAAATGCTGCTCTCACTGGATGCGGAG
GCGACGCGGCTGAAGTGCCACGGAGCAACGGACTTCATATCAGACGCCAA
TTTCGATTCCATGCTGCGAAGCGTACTCAATATATTCGTCCTACTAACAT
GCGCACTATCCTTTGCACTCTGTACAAGGGCTCTGTGGAGAGCATATCTG
CTGAGATGTACAACTGTCAACTTTTTCCGTTCGCAATTCGGCAAGGAGCT
GAGCTTTGACGGCCGACTGGAATTCGTTAACTTTTGGTACATCATGATCA
TTTTCAATGACGTCCTTTTGATCATTGGATCAGCTCTAAAAGAGCAAATC
GAGGGAAGGTACTTGGTGGTGGACCAATGGGATACCTGCTCGCTTTTTCT
GGGAATTGGCAACCTGCTTGTTTGGTTCGGAGTGCTGCGCTACCTCGGCT
TCTTCAAAACCTACAACGTTGTGATACTGACGCTGAAAAAGGCGGCACCA
AAGATTCTGCGCTTCCTTATCGCCGCCTTGCTGATCTATGCTGGATTTGT
GTTTTGCGGCTGGCTGATCTTGGGACCCTATCACATGAAGTTCCGATCGC
TGGCTACAACGTCAGAGTGCTTGTTTGCGCTGATAAACGGTGATGATATG
TTCGCCACCTTTGCCACGCTTTCCAGCAAGGCCACCTGGCTGTGGTGGTT
CTGCCAGATCTACTTGTACTCGTTCATATCCTTGTACATTTATGTGGTCC
TGTCGCTGTTCATTGCCGTCATAATGGATGCCTACGACACGATAAAGGCG
TATTACAAGGATGGCTTTCCCACCACCGATCTCAAGGCATTTGTCGGAAC
GCGCACTGCAGAGGACATTAGTTCTGGTGTCTTCATGACCGACCTGGACG
ACTTCGACCAGACGAGCTTCCTTGACGTGGTGAAGAGCATTTGCTGCTGT
GGACGGTGCGGTCGGCATCAGGAGCCCGCCCAGCCCAACAGTGGTTACAC
CAGCCTTTCTAGTATTATGAAGTAAAAGCTTTCTAGACCAT
BS09985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 1959 | CG8743-PA | 1..1959 | 17..1975 | 9780 | 99.9 | Plus |
| CG42638-RA | 1959 | CG42638-PA | 1..1959 | 17..1975 | 9780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..2219 | 12..1975 | 9790 | 99.9 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..2219 | 12..1975 | 9790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716146..19717000 | 1238..384 | 4260 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19747562..19748416 | 1238..384 | 4260 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19715269..19716008 | 1975..1236 | 3700 | 100 | Minus |
| 3L | 28110227 | 3L | 19746685..19747424 | 1975..1236 | 3700 | 100 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 385..12 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 385..12 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:54:29 has no hits.
BS09985.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:17 Download gff for
BS09985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 283..2239 | 17..1973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:39 Download gff for
BS09985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 261..2217 | 17..1973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:12 Download gff for
BS09985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 261..2217 | 17..1973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:12 Download gff for
BS09985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19717700..19718068 | 17..385 | 100 | | Minus |
| 3L | 19715271..19716007 | 1237..1973 | 100 | <- | Minus |
| 3L | 19716148..19716998 | 386..1236 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:39 Download gff for
BS09985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19708371..19709107 | 1237..1973 | 100 | <- | Minus |
| arm_3L | 19709248..19710098 | 386..1236 | 99 | <- | Minus |
| arm_3L | 19710800..19711168 | 17..385 | 100 | | Minus |
BS09985.pep Sequence
Translation from 16 to 1974
> BS09985.pep
MQSYGPGAQTAPAVKRRTDSYEAAQQQQQSPESDEEYVNTRILRRQVQLQ
STPVAPVVPMPISAGSGTAPPSVDGREEQPEFPGSSAASYQEERMRRKLQ
FFFMNPIEKWQAKRKFPYKFVVQIVKIFLVTMQLCLFAHSRYNHINYTGD
NRFAFSHLFLRGWDSSREVESYPPAVGPFALYLKSEFFDTVQYAVNGYAN
VSRSIGPYDYPTPNNTMPPLKLCLQNYREGTIFGFNESYIFDPHIDEVCE
RLPPNVTTIGVENYLRQRDVEVNFASLVSAQLTFKIKTVNFKANGGPLSA
PDCFRFDISITFNNRDHDGQMLLSLDAEATRLKCHGATDFISDANFDSML
RSVLNIFVLLTCALSFALCTRALWRAYLLRCTTVNFFRSQFGKELSFDGR
LEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNL
LVWFGVLRYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWL
ILGPYHMKFRSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIYL
YSFISLYIYVVLSLFIAVIMDAYDTIKAYYKDGFPTTDLKAFVGTRTAED
ISSGVFMTDLDDFDQTSFLDVVKSICCCGRCGRHQEPAQPNSGYTSLSSI
MK*
BS09985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-PA | 652 | CG8743-PA | 1..652 | 1..652 | 3444 | 100 | Plus |
| CG42638-PA | 652 | CG42638-PA | 1..652 | 1..652 | 3444 | 100 | Plus |
