Clone Sequence Records
BS09986.3prime Sequence
921 bp (774 high quality bases) assembled on 2006-04-19
> BS09986.3prime
ATGGTCTAGAAAGCTTTTAAGCCTGGCTTTCGTCGCGTCCGCCGAATACT
TGTCCCGGGATGTTTGGCTGGCGATGCAGCGGCGATTGCGATGGCACTTG
CACCTGGGCATCGGCAACGTCGTTGTAGGGCGGAGGAGGCGGAATGCCAC
CGATTACATCAACGCCAGCGTCAATAACCTCCAAATCGTCCGCTTCCTCG
TCGACATTAGCGTTTACAGCTGCATCGCTGCGGCGCATTGGTGGCGTATT
GGCATTGACATGCATAGTGTTGTTATTGTTCGGCTGATCATTGTTATTAT
CCATGTTGTCATCCGTGTTGGAGGCTACGTTCGCGGTAGTGGCTGCTCCA
AGGGCCACGAAGAGAGGGGCCACCGAAGGATTAACCTCCGCACCTCCAAC
AGCTGCGTCTTCACCCTCTTCGTAGTTTGACATGGCCACCTGATAAGATG
GCGGTGGTGCCTGCTTCAAGTACTGGGCAATCGCTTCATCGTAATTGGGC
AACAGAGTGGAGTAAGACCGCTCTTCGGCACCAAAGGTTCCGCCAACACT
GTGGACTCCAGTCGGTGGCTCCAGGAAGGGGAACAGGGTGCGAACGTGTT
GCTGACGGAGCGTCAAGTACTTGTAGCAGCGCCAAACGATACCAATGCAA
TAGGCCTTTAGAAACACAATGCAGATGAATACGACCAGGACAACAACAAC
TAGCTCCTCAGGTGGTAGTTCTAGCAGCTTCTCGCGCCACGGCAAGCGAT
GCGACTCGGCAATGATGCTGTGAATGGCCTGCAGGTAGCACAGATATCCA
GCGGCGGTGAGAGTTGTAATAGCGAAATCAAACAATTGCAAACAGAAGAA
CGGCAACAGGTGGGAGGGTTTTCCCTTGATGGTTCCGTAGATCATCATCA
GTGTAATGGCTATCATGCAGG
BS09986.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-PA | 1287 | CG14767-RA | 383..1287 | 921..17 | 4525 | 100 | Minus |
| CG14767-PC | 1299 | CG14767-RC | 395..1299 | 921..17 | 4525 | 100 | Minus |
| CG14767-PB | 1299 | CG14767-RB | 395..1299 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RB | 2043 | CG14767-RB | 462..1367 | 921..16 | 4530 | 100 | Minus |
| CG14767-RC | 2132 | CG14767-RC | 551..1456 | 921..16 | 4530 | 100 | Minus |
| CG14767-RA | 2120 | CG14767-RA | 539..1444 | 921..16 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8718693..8719489 | 16..812 | 3985 | 100 | Plus |
| 2R | 25286936 | 2R | 8719646..8719754 | 813..921 | 545 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 17..72 | 300..245 | 109 | 66.1 | Minus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7055..7110 | 300..245 | 109 | 66.1 | Minus |
BS09986.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:52 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-PC | 395..1299 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:37 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-PB | 395..1299 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:17:21 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 539..1457 | 4..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:38 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 539..1457 | 4..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:38 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8718680..8719489 | 4..812 | 99 | <- | Plus |
| 2R | 8719646..8719754 | 813..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:17:21 Download gff for
BS09986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606185..4606994 | 4..812 | 99 | <- | Plus |
| arm_2R | 4607151..4607259 | 813..921 | 100 | | Plus |
BS09986.5prime Sequence
940 bp (789 high quality bases) assembled on 2006-04-19
> BS09986.5prime
GAAGTTATCAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAAC
GCAACCAGCTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGC
AGCACCGGAAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCA
TGTCCACACGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACA
TATTGGCGCTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATG
GACGAACTGGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACC
GGCCCTACCCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTG
ACCACTCCCTCAACTATCAGAACTTCGATATGGGCGGACTGGTGTGCACC
TGCATGATAGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAA
ACCCTCCCACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTA
TTACAACTCTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCAC
AGCATCATTGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGA
ACTACCACCTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCA
TTGTGTTTCTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTACAAG
TACTTGACGCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGA
GCCACCGACTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAAGAGC
GGTCTTACTCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCAGTAC
TTGAAGCAGGCACCACCGCCATCTTATCAGGTGGCCATGTCAAACTACGA
AGAGGGTGAAGACGCAGCTGTTGGAGGTGCGGAGGTTAAT
BS09986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-PA | 1287 | CG14767-RA | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG14767-PC | 1299 | CG14767-RC | 364..936 | 368..940 | 2865 | 100 | Plus |
| CG14767-PB | 1299 | CG14767-RB | 364..936 | 368..940 | 2865 | 100 | Plus |
| CG14767-PC | 1299 | CG14767-RC | 1..352 | 17..368 | 1760 | 100 | Plus |
| CG14767-PB | 1299 | CG14767-RB | 1..352 | 17..368 | 1760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 2120 | CG14767-RA | 157..1080 | 17..940 | 4620 | 100 | Plus |
| CG14767-RB | 2043 | CG14767-RB | 68..1003 | 17..940 | 4490 | 98.7 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..1092 | 17..940 | 4490 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8719057..8719489 | 940..508 | 2165 | 100 | Minus |
| 2R | 25286936 | 2R | 8719855..8720033 | 368..190 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 190..17 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8719646..8719784 | 507..369 | 695 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 44..118 | 127 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9226 | 43..102 | 122 | 68.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..196 | 43..102 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6914 | 47..139 | 114 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6839 | 47..136 | 110 | 59.3 | Plus |
BS09986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:54 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:38 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:23:10 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 157..1080 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:26 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 157..1080 | 17..940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:26 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719057..8719489 | 508..940 | 100 | <- | Minus |
| 2R | 8719646..8719784 | 369..507 | 100 | <- | Minus |
| 2R | 8719855..8720032 | 191..368 | 100 | <- | Minus |
| 2R | 8723257..8723430 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:23:10 Download gff for
BS09986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606562..4606994 | 508..940 | 100 | <- | Minus |
| arm_2R | 4607151..4607289 | 369..507 | 100 | <- | Minus |
| arm_2R | 4607360..4607537 | 191..368 | 100 | <- | Minus |
| arm_2R | 4610762..4610935 | 17..190 | 100 | | Minus |
BS09986.complete Sequence
1319 bp (1319 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636518
> BS09986.complete
GAAGTTATCAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAAC
GCAACCAGCTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGC
AGCACCGGAAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCA
TGTCCACACGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACA
TATTGGCGCTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATG
GACGAACTGGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACC
GGCCCTACCCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTG
ACCACTCCCTCAACTATCAGAACTTCGATATGGGCGGACTGGTGTGCACC
TGCATGATAGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAA
ACCCTCCCACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTA
TTACAACTCTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCAC
AGCATCATTGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGA
ACTACCACCTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCA
TTGTGTTTCTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTACAAG
TACTTGACGCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGA
GCCACCGACTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAAGAGC
GGTCTTACTCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCAGTAC
TTGAAGCAGGCACCACCGCCATCTTATCAGGTGGCCATGTCAAACTACGA
AGAGGGTGAAGACGCAGCTGTTGGAGGTGCGGAGGTTAATCCTTCGGTGG
CCCCTCTCTTCGTGGCCCTTGGAGCAGCCACTACCGCGAACGTAGCCTCC
AACACGGATGACAACATGGATAATAACAATGATCAGCCGAACAATAACAA
CACTATGCATGTCAATGCCAATACGCCACCAATGCGCCGCAGCGATGCAG
CTGTAAACGCTAATGTCGACGAGGAAGCGGACGATTTGGAGGTTATTGAC
GCTGGCGTTGATGTAATCGGTGGCATTCCGCCTCCTCCGCCCTACAACGA
CGTTGCCGATGCCCAGGTGCAAGTGCCATCGCAATCGCCGCTGCATCGCC
AGCCAAACATCCCGGGACAAGTATTCGGCGGACGCGACGAAAGCCAGGCT
TAAAAGCTTTCTAGACCAT
BS09986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 1287 | CG14767-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
| CG14767-RB | 1299 | CG14767-PB | 1..1299 | 17..1303 | 6280 | 99.1 | Plus |
| CG14767-RC | 1299 | CG14767-PC | 1..1299 | 17..1303 | 6280 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 2120 | CG14767-RA | 157..1444 | 17..1304 | 6440 | 100 | Plus |
| CG14767-RB | 2043 | CG14767-RB | 68..1367 | 17..1304 | 6285 | 99.1 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..1456 | 17..1304 | 6285 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8718693..8719489 | 1304..508 | 3985 | 100 | Minus |
| 2R | 25286936 | 2R | 8719855..8720033 | 368..190 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 190..17 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8719646..8719784 | 507..369 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 44..118 | 127 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..196 | 43..102 | 122 | 68.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9226 | 43..102 | 122 | 68.9 | Plus |
BS09986.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:42 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:28 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 155..1455 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:24 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 163..1441 | 23..1301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:43 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 163..1441 | 23..1301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:43 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719855..8720032 | 191..368 | 100 | <- | Minus |
| 2R | 8723257..8723424 | 23..190 | 100 | | Minus |
| 2R | 8718696..8719489 | 508..1301 | 100 | <- | Minus |
| 2R | 8719646..8719784 | 369..507 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:24 Download gff for
BS09986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606201..4606994 | 508..1301 | 100 | <- | Minus |
| arm_2R | 4607151..4607289 | 369..507 | 100 | <- | Minus |
| arm_2R | 4607360..4607537 | 191..368 | 100 | <- | Minus |
| arm_2R | 4610762..4610929 | 23..190 | 100 | | Minus |
BS09986.pep Sequence
Translation from 16 to 1302
> BS09986.pep
MFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFTCCFGLHVHTAT
LMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYTVDLSAPALPTP
LSKVEPPYAYRDHSLNYQNFDMGGLVCTCMIAITLMMIYGTIKGKPSHLL
PFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESHRLPWREKLLELPPEE
LVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQHVRTLFPFLEPPTGV
HSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPPSYQVAMSNYEEGEDA
AVGGAEVNPSVAPLFVALGAATTANVASNTDDNMDNNNDQPNNNNTMHVN
ANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIGGIPPPPPYNDVADAQ
VQVPSQSPLHRQPNIPGQVFGGRDESQA*
BS09986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-PA | 428 | CG14767-PA | 1..428 | 1..428 | 2279 | 100 | Plus |
| CG14767-PB | 432 | CG14767-PB | 1..432 | 1..428 | 2264 | 99.1 | Plus |
| CG14767-PC | 432 | CG14767-PC | 1..432 | 1..428 | 2264 | 99.1 | Plus |
