Clone Sequence Records
BS09987.3prime Sequence
980 bp (861 high quality bases) assembled on 2006-04-19
> BS09987.3prime
ATGGTCTAGAAAGCTTTCAAGCCGATGTTTCGTTCGGTTCCATCCAGCCC
TCGCTGTCGTCTTCGCTATCCGAATCCTCGGACTCGGATAATTCGATAGC
CACACGTCTGGCCAAGATTGAAGCCACATCCAATGGCGCCGCGTTTCGTT
CAATTTCCTTTTGCTCTGACTTTTCAACTTTACGTAGAGTAATACCATCT
CGAATGGCTTTCATCAAGTCGTTGCGTGGGTCATGGAATGGAGGCAGCAT
CTTCTTGGGTGCGACAATGTGAGGCACACCATTTTGTTGGCCGGGCTGCT
GCATTTCGCCATTGGCCAGTGATTTGGGAAGAATTTGATGCGGGCGCAGC
GTGTGTTGGTTGCCACTGCCCATGCCTTCCTCGACTGGAGGCGGTGGCGG
CGGCGGTGGTGGCGCGGCATTAGGTGGCGACATCTTAGGCGAGTGCTGAT
CTGGAACCGGCGGCGGTGGCGGCAAGTCGCTAAGGGAGTTCAGTTGATTG
CCCGTCATACCGATGCTGTGGAAAGTATTGCTCAGTTGCGTCATGACCAT
ATCATTGGCATTCTGGACGCTGTTGGGAGATCCAGCTCCCGACGAACTGT
TCGCCCGGCCAAGCAGTTTGGCCGCCATATGCCCGCTGTTGACTCCGTTC
ATGCCAGACATTGGTGAAATGACGTCTGGAACTGGTGGAGGCGGTGGCAA
GGCATCCCGACTGGTCGACATACTTCTGCCCCTTGTCGGAGTGTTGGCAT
TGGAGGCTGTGGGCGTACCACCACCGCTGCCATTCGATGGCGGAGCCGGT
GGCGGCTGCGACGGACGCGGTTTGTTACGCGACGGTGTTCCCGGTCCGTA
GATGGGCTCCGGCGACATTACTCCCTGTCCAGTTTGGCCGTACAGCGCAT
GCGACTGATACATTCCGGCGTCATACATCTGCTGATGCTGCATGTGCATC
TGCTGGGGGCCACCCATGCCGTTGCCGAAG
BS09987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4636-PA | 1842 | SCAR-RA | 879..1842 | 980..17 | 4770 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 1140..2103 | 980..17 | 4790 | 99.8 | Minus |
SCAR-RD | 3118 | CG4636-RD | 1425..2388 | 980..17 | 4790 | 99.8 | Minus |
SCAR-RF | 3037 | CG4636-RF | 1344..2307 | 980..17 | 4790 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10980578..10981112 | 980..446 | 2660 | 99.8 | Minus |
2L | 23513712 | 2L | 10981176..10981431 | 448..193 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 10981486..10981665 | 196..17 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:42:50 has no hits.
BS09987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:55 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-PA | 879..1842 | 17..980 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:40 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4636-PA | 879..1842 | 17..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:17:17 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RF | 1344..2312 | 12..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:31 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RF | 1344..2312 | 12..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:31 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10980578..10981112 | 446..980 | 99 | -> | Minus |
2L | 10981179..10981428 | 196..445 | 99 | -> | Minus |
2L | 10981487..10981670 | 12..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:17:17 Download gff for
BS09987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10980578..10981112 | 446..980 | 99 | -> | Minus |
arm_2L | 10981179..10981428 | 196..445 | 99 | -> | Minus |
arm_2L | 10981487..10981670 | 12..195 | 98 | | Minus |
BS09987.5prime Sequence
920 bp (756 high quality bases) assembled on 2006-04-19
> BS09987.5prime
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACCT
ACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTTCGG
CACGGCATGGGTGCCCCCCA
BS09987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4636-PA | 1842 | SCAR-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
CG4636-PA | 1842 | SCAR-RA | 794..881 | 809..896 | 440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 261..1166 | 16..920 | 4445 | 99.6 | Plus |
SCAR-RA | 2292 | CG4636-RA | 261..1166 | 16..920 | 4445 | 99.6 | Plus |
SCAR-RC | 2914 | CG4636-RC | 261..1009 | 16..764 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 10980445..10980604 | 762..920 | 675 | 96.2 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:32:22 has no hits.
BS09987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:56 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:42 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4636-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:26 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 257..1165 | 13..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:26 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 257..1165 | 13..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:26 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10980445..10980603 | 762..919 | 97 | | Plus |
2L | 10977957..10978706 | 13..761 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:26 Download gff for
BS09987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10980445..10980603 | 762..919 | 97 | | Plus |
arm_2L | 10977957..10978706 | 13..761 | 99 | -> | Plus |
BS09987.complete Sequence
1874 bp assembled on 2009-08-26
GenBank Submission: KX803279
> BS09987.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGG
CAACGGCATGGGTGGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGT
ATGACGCCGGAATGTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAG
GGAGTAATGTCGCCGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAA
CAAACCGCGTCCGTCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCG
GTGGTGGTACGCCCACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGA
AGTATGTCGACCAGTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGA
CGTCATTTCACCAATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGG
CGGCCAAACTGCTTGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCC
AACAGCGTCCAGAATGCCAATGATATGGTCATGACGCAACTGAGCAATAC
TTTCCACAGCATCGGTATGACGGGCAATCAACTGAACTCCCTTAGCGACT
TGCCGCCACCGCCGCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCA
CCTAATGCCGCGCCACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGG
CATGGGCAGTGGCAACCAACACACGCTGCGCCCGCATCAAATTCTTCCCA
AATCACTGGCCAATGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTG
CCTCACATTGTCGCACCCAAGAAGATGCTGCCTCCATTCCATGACCCACG
CAACGACTTGATGAAAGCCATTCGAGATGGTATTACTCTACGTAAAGTTG
AAAAGTCAGAGCAAAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTG
GCTTCAATCTTGGCCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGA
TTCGGATAGCGAAGACGACAGCGAGGGCTGGATGGAACCGAACGAAACAT
CGGCTTGAAAGCTTTCTAGACCAT
BS09987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 1899 | CG4636-PE | 1..1842 | 17..1858 | 9180 | 99.9 | Plus |
SCAR-RA | 1842 | CG4636-PA | 1..1842 | 17..1858 | 9180 | 99.9 | Plus |
SCAR-RD | 2025 | CG4636-PD | 929..2025 | 762..1858 | 5455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 261..2103 | 16..1858 | 9185 | 99.9 | Plus |
SCAR-RA | 2292 | CG4636-RA | 261..2103 | 16..1858 | 9185 | 99.9 | Plus |
SCAR-RD | 3118 | CG4636-RD | 1292..2388 | 762..1858 | 5455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 10980445..10981112 | 762..1429 | 3325 | 99.9 | Plus |
2L | 23513712 | 2L | 10981176..10981431 | 1427..1682 | 1265 | 99.6 | Plus |
2L | 23513712 | 2L | 10981486..10981665 | 1679..1858 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:17 has no hits.
BS09987.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:30 Download gff for
BS09987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 260..2100 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:55 Download gff for
BS09987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 262..2102 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:06 Download gff for
BS09987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 262..2102 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:06 Download gff for
BS09987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10981487..10981664 | 1680..1857 | 100 | | Plus |
2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
2L | 10980445..10981112 | 762..1429 | 99 | -> | Plus |
2L | 10981179..10981428 | 1430..1679 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:55 Download gff for
BS09987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
arm_2L | 10980445..10981112 | 762..1429 | 99 | -> | Plus |
arm_2L | 10981179..10981428 | 1430..1679 | 99 | -> | Plus |
arm_2L | 10981487..10981664 | 1680..1857 | 100 | | Plus |
BS09987.pep Sequence
Translation from 16 to 1857
> BS09987.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSA*
BS09987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-PE | 632 | CG4636-PE | 1..613 | 1..613 | 3245 | 100 | Plus |
SCAR-PA | 613 | CG4636-PA | 1..613 | 1..613 | 3245 | 100 | Plus |
SCAR-PC | 640 | CG4636-PC | 1..640 | 1..613 | 3207 | 95.8 | Plus |
SCAR-PB | 641 | CG4636-PB | 1..641 | 1..613 | 3201 | 95.5 | Plus |
SCAR-PF | 647 | CG4636-PF | 1..647 | 1..613 | 3195 | 94.6 | Plus |