Clone BS09987 Report

Search the DGRC for BS09987

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:99
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptSCAR-RA
Protein status:BS09987.pep: full length peptide match
Sequenced Size:1874

Clone Sequence Records

BS09987.3prime Sequence

980 bp (861 high quality bases) assembled on 2006-04-19

> BS09987.3prime
ATGGTCTAGAAAGCTTTCAAGCCGATGTTTCGTTCGGTTCCATCCAGCCC
TCGCTGTCGTCTTCGCTATCCGAATCCTCGGACTCGGATAATTCGATAGC
CACACGTCTGGCCAAGATTGAAGCCACATCCAATGGCGCCGCGTTTCGTT
CAATTTCCTTTTGCTCTGACTTTTCAACTTTACGTAGAGTAATACCATCT
CGAATGGCTTTCATCAAGTCGTTGCGTGGGTCATGGAATGGAGGCAGCAT
CTTCTTGGGTGCGACAATGTGAGGCACACCATTTTGTTGGCCGGGCTGCT
GCATTTCGCCATTGGCCAGTGATTTGGGAAGAATTTGATGCGGGCGCAGC
GTGTGTTGGTTGCCACTGCCCATGCCTTCCTCGACTGGAGGCGGTGGCGG
CGGCGGTGGTGGCGCGGCATTAGGTGGCGACATCTTAGGCGAGTGCTGAT
CTGGAACCGGCGGCGGTGGCGGCAAGTCGCTAAGGGAGTTCAGTTGATTG
CCCGTCATACCGATGCTGTGGAAAGTATTGCTCAGTTGCGTCATGACCAT
ATCATTGGCATTCTGGACGCTGTTGGGAGATCCAGCTCCCGACGAACTGT
TCGCCCGGCCAAGCAGTTTGGCCGCCATATGCCCGCTGTTGACTCCGTTC
ATGCCAGACATTGGTGAAATGACGTCTGGAACTGGTGGAGGCGGTGGCAA
GGCATCCCGACTGGTCGACATACTTCTGCCCCTTGTCGGAGTGTTGGCAT
TGGAGGCTGTGGGCGTACCACCACCGCTGCCATTCGATGGCGGAGCCGGT
GGCGGCTGCGACGGACGCGGTTTGTTACGCGACGGTGTTCCCGGTCCGTA
GATGGGCTCCGGCGACATTACTCCCTGTCCAGTTTGGCCGTACAGCGCAT
GCGACTGATACATTCCGGCGTCATACATCTGCTGATGCTGCATGTGCATC
TGCTGGGGGCCACCCATGCCGTTGCCGAAG

BS09987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4636-PA 1842 SCAR-RA 879..1842 980..17 4770 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 1140..2103 980..17 4790 99.8 Minus
SCAR-RD 3118 CG4636-RD 1425..2388 980..17 4790 99.8 Minus
SCAR-RF 3037 CG4636-RF 1344..2307 980..17 4790 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10980578..10981112 980..446 2660 99.8 Minus
2L 23513712 2L 10981176..10981431 448..193 1265 99.6 Minus
2L 23513712 2L 10981486..10981665 196..17 900 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:42:50 has no hits.

BS09987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:55 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-PA 879..1842 17..980 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:40 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4636-PA 879..1842 17..980 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:17:17 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RF 1344..2312 12..980 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:31 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RF 1344..2312 12..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:31 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10980578..10981112 446..980 99 -> Minus
2L 10981179..10981428 196..445 99 -> Minus
2L 10981487..10981670 12..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:17:17 Download gff for BS09987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10980578..10981112 446..980 99 -> Minus
arm_2L 10981179..10981428 196..445 99 -> Minus
arm_2L 10981487..10981670 12..195 98   Minus

BS09987.5prime Sequence

920 bp (756 high quality bases) assembled on 2006-04-19

> BS09987.5prime
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACCT
ACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTTCGG
CACGGCATGGGTGCCCCCCA

BS09987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4636-PA 1842 SCAR-RA 1..793 17..809 3965 100 Plus
CG4636-PA 1842 SCAR-RA 794..881 809..896 440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 261..1166 16..920 4445 99.6 Plus
SCAR-RA 2292 CG4636-RA 261..1166 16..920 4445 99.6 Plus
SCAR-RC 2914 CG4636-RC 261..1009 16..764 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977961..10978706 16..761 3730 100 Plus
2L 23513712 2L 10980445..10980604 762..920 675 96.2 Plus
Blast to na_te.dros performed on 2015-02-02 12:32:22 has no hits.

BS09987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:25:56 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-PA 1..904 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:41:42 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4636-PA 1..904 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:26 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 257..1165 13..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:26 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 257..1165 13..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:26 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10980445..10980603 762..919 97   Plus
2L 10977957..10978706 13..761 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:26 Download gff for BS09987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10980445..10980603 762..919 97   Plus
arm_2L 10977957..10978706 13..761 99 -> Plus

BS09987.complete Sequence

1874 bp assembled on 2009-08-26

GenBank Submission: KX803279

> BS09987.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGG
CAACGGCATGGGTGGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGT
ATGACGCCGGAATGTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAG
GGAGTAATGTCGCCGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAA
CAAACCGCGTCCGTCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCG
GTGGTGGTACGCCCACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGA
AGTATGTCGACCAGTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGA
CGTCATTTCACCAATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGG
CGGCCAAACTGCTTGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCC
AACAGCGTCCAGAATGCCAATGATATGGTCATGACGCAACTGAGCAATAC
TTTCCACAGCATCGGTATGACGGGCAATCAACTGAACTCCCTTAGCGACT
TGCCGCCACCGCCGCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCA
CCTAATGCCGCGCCACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGG
CATGGGCAGTGGCAACCAACACACGCTGCGCCCGCATCAAATTCTTCCCA
AATCACTGGCCAATGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTG
CCTCACATTGTCGCACCCAAGAAGATGCTGCCTCCATTCCATGACCCACG
CAACGACTTGATGAAAGCCATTCGAGATGGTATTACTCTACGTAAAGTTG
AAAAGTCAGAGCAAAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTG
GCTTCAATCTTGGCCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGA
TTCGGATAGCGAAGACGACAGCGAGGGCTGGATGGAACCGAACGAAACAT
CGGCTTGAAAGCTTTCTAGACCAT

BS09987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 1899 CG4636-PE 1..1842 17..1858 9180 99.9 Plus
SCAR-RA 1842 CG4636-PA 1..1842 17..1858 9180 99.9 Plus
SCAR-RD 2025 CG4636-PD 929..2025 762..1858 5455 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 261..2103 16..1858 9185 99.9 Plus
SCAR-RA 2292 CG4636-RA 261..2103 16..1858 9185 99.9 Plus
SCAR-RD 3118 CG4636-RD 1292..2388 762..1858 5455 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977961..10978706 16..761 3730 100 Plus
2L 23513712 2L 10980445..10981112 762..1429 3325 99.9 Plus
2L 23513712 2L 10981176..10981431 1427..1682 1265 99.6 Plus
2L 23513712 2L 10981486..10981665 1679..1858 900 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:35:17 has no hits.

BS09987.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:30 Download gff for BS09987.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 260..2100 17..1857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:55 Download gff for BS09987.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 262..2102 17..1857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:06 Download gff for BS09987.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 262..2102 17..1857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:06 Download gff for BS09987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10981487..10981664 1680..1857 100   Plus
2L 10977962..10978706 17..761 100 -> Plus
2L 10980445..10981112 762..1429 99 -> Plus
2L 10981179..10981428 1430..1679 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:55 Download gff for BS09987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10977962..10978706 17..761 100 -> Plus
arm_2L 10980445..10981112 762..1429 99 -> Plus
arm_2L 10981179..10981428 1430..1679 99 -> Plus
arm_2L 10981487..10981664 1680..1857 100   Plus

BS09987.pep Sequence

Translation from 16 to 1857

> BS09987.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSA*

BS09987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PE 632 CG4636-PE 1..613 1..613 3245 100 Plus
SCAR-PA 613 CG4636-PA 1..613 1..613 3245 100 Plus
SCAR-PC 640 CG4636-PC 1..640 1..613 3207 95.8 Plus
SCAR-PB 641 CG4636-PB 1..641 1..613 3201 95.5 Plus
SCAR-PF 647 CG4636-PF 1..647 1..613 3195 94.6 Plus