Clone Sequence Records
BS10001.3prime Sequence
929 bp (800 high quality bases) assembled on 2006-04-19
> BS10001.3prime
ATGGTCTAGAAAGCTTTTACGACTGCTTCTCCTTCCGTCTGGCCTGCAGC
ACACCACGCAGCATGTTGAAGGAACTCAGTACAGGCACCATGATGGGCAA
GAAGAGTGGAATGTAGATGGCGTACTTCTGCTCGTCCGGGAAGTACAACT
GCGCCAGCAGGCTGGCGTCAAAGAATCCCCGCTCCGAGGCCACGAACGCA
CGCTTGGCCAGCACCGAAGCGTCCGCCAGTCGGTGCTCCAAAAGAGCAGC
CTTGGCAGCCAAGATGTCGGCATAGGAATTTGTAATGGCGGCACCCACCT
CGTCGTCTATCACAATGTAGCTGATTTGATCCAACAGTTTGATGAGGCTC
TGGAGCGTGCTGCTTGCTGTGGATATGTGTCGAATGGCACTGCGTCTTAG
GTATGCTTCATACTCCCAGCGACGTGGCTCCAGTTGCTCGATATCCACCA
CCTTAACGCCCTCCATCTGAAGCTCACTGCTGATGTCGAGCAGCTTGTGC
AGCTGGTCCAGCATCACCTGCATGTTGTCCGTGGTGCTGACATGGTAGGG
AACTGCCTCCTGATCGCTCATGGCCGCAAGGCACACATGCTCTGGCGGAT
TAGCAATGATGAAGCCACCCCAGGGTGGCGAAATGAAGGCATCCACGTCG
TTCCGCGTCAGCCGCTGATCCTTGCTGTTGTAGATGTGAAGCGGAGCGAT
GTGGCACGGTGGAATGTACACCACCAGGTTGATGGCCGGCTTGTCGGTGG
TGCTGGCGCTTAGATTCTGGGCAATCGATGTCAGCAGATGAGGCAGAGCG
GTTTCCTGGAGGGCGTAGTGTCGCCCCAATTTGCTCTGGTCGCGCACCTG
CTTGAGATCAGCCTCGATGGCCACCCGGTACTTCCACTGCGATCGCACCG
TGTAATTGGAAACACCGGACACCTTTAGC
BS10001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31120-PB | 1611 | CG31120-RB | 703..1611 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1764 | CG44255-RC | 804..1713 | 925..16 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24913827..24914421 | 331..925 | 2975 | 100 | Plus |
| 3R | 32079331 | 3R | 24913267..24913582 | 16..331 | 1565 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:29:45 has no hits.
BS10001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:11 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PB | 700..1611 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:06 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PB | 700..1611 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:36:58 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 801..1713 | 16..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:01 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 801..1713 | 16..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:01 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24913267..24913581 | 16..330 | 99 | <- | Plus |
| 3R | 24913827..24914424 | 331..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:36:58 Download gff for
BS10001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20738989..20739303 | 16..330 | 99 | <- | Plus |
| arm_3R | 20739549..20740146 | 331..929 | 99 | | Plus |
BS10001.5prime Sequence
931 bp (833 high quality bases) assembled on 2006-04-19
> BS10001.5prime
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCCAGCACCACCGA
CAAGCCGGGCATCAACCTGGTGGTGTACATT
BS10001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31120-PB | 1611 | CG31120-RB | 1..915 | 17..931 | 4550 | 99.8 | Plus |
| CG31120-PA | 1611 | CG31120-RA | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1764 | CG44255-RC | 101..1016 | 16..931 | 4565 | 99.9 | Plus |
| CG44254-RA | 1826 | CG44254-RA | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24914209..24914444 | 931..696 | 1165 | 99.6 | Minus |
| 3R | 32079331 | 3R | 24915193..24915391 | 500..302 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24914506..24914700 | 695..501 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 24915447..24915589 | 302..160 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24915645..24915737 | 162..70 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 24917703..24917764 | 77..16 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:46 has no hits.
BS10001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:12 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PB | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:07 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PB | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:59 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..1016 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:25 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..1016 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:25 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24915645..24915735 | 72..162 | 100 | <- | Minus |
| 3R | 24917709..24917770 | 9..71 | 95 | | Minus |
| 3R | 24914209..24914444 | 696..931 | 99 | <- | Minus |
| 3R | 24914506..24914700 | 501..695 | 100 | <- | Minus |
| 3R | 24915193..24915390 | 303..500 | 100 | <- | Minus |
| 3R | 24915447..24915586 | 163..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:59 Download gff for
BS10001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20739931..20740166 | 696..931 | 99 | <- | Minus |
| arm_3R | 20740228..20740422 | 501..695 | 100 | <- | Minus |
| arm_3R | 20740915..20741112 | 303..500 | 100 | <- | Minus |
| arm_3R | 20741169..20741308 | 163..302 | 100 | <- | Minus |
| arm_3R | 20741367..20741457 | 72..162 | 100 | <- | Minus |
| arm_3R | 20743431..20743492 | 9..71 | 95 | | Minus |
BS10001.complete Sequence
1643 bp (1643 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636519
> BS10001.complete
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCCAGCACCACCGA
CAAGCCGGCCATCAACCTGGTGGTGTACATTCCACCGTGCCACATCGCTC
CGCTTCACATCTACAACAGCAAGGATCAGCGGCTGACGCGGAACGACGTG
GATGCCTTCATTTCGCCACCCTGGGGTGGCTTCATCATTGCTAATCCGCC
AGAGCATGTGTGCCTTGCGGCCATGAGCGATCAGGAGGCAGTTCCCTACC
ATGTCAGCACCACGGACAACATGCAGGTGATGCTGGACCAGCTGCACAAG
CTGCTCGACATCAGCAGTGAGCTTCAGATGGAGGGCGTTAAGGTGGTGGA
TATCGAGCAACTGGAGCCACGTCGCTGGGAGTATGAAGCATACCTAAGAC
GCAGTGCCATTCGACACATATCCACAGCAAGCAGCACGCTCCAGAGCCTC
ATCAAACTGTTGGATCAAATCAGCTACATTGTGATAGACGACGAGGTGGG
TGCCGCCATTACAAATTCCTATGCCGACATCTTGGCTGCCAAGGCTGCTC
TTTTGGAGCACCGACTGGCGGACGCTTCGGTGCTGGCCAAGCGTGCGTTC
GTGGCCTCGGAGCGGGGATTCTTTGACGCCAGCCTGCTGGCGCAGTTGTA
CTTCCCGGACGAGCAGAAGTACGCCATCTACATTCCACTCTTCTTGCCCA
TCATGGTGCCTGTACTGAGTTCCTTCAACATGCTGCGTGGTGTGCTGCAG
GCCAGACGGAAGGAGAAGCAGTCGTAAAAGCTTTCTAGACCAT
BS10001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1611 | CG44255-PC | 1..1611 | 17..1627 | 8040 | 99.9 | Plus |
| CG44254-RA | 1611 | CG44254-PA | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1764 | CG44255-RC | 101..1713 | 16..1628 | 8050 | 99.9 | Plus |
| CG44254-RA | 1826 | CG44254-RA | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24913827..24914444 | 1313..696 | 3090 | 100 | Minus |
| 3R | 32079331 | 3R | 24913267..24913582 | 1628..1313 | 1565 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24915193..24915391 | 500..302 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24914506..24914700 | 695..501 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 24915447..24915589 | 302..160 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24915645..24915737 | 162..70 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 24917703..24917764 | 77..16 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:00 has no hits.
BS10001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:44 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RB | 1..1611 | 17..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:30 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RB | 67..1684 | 9..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:34 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 102..1710 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:44 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RB | 67..1684 | 9..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:15 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 102..1710 | 17..1625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:15 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24913270..24913581 | 1314..1625 | 99 | <- | Minus |
| 3R | 24913827..24914444 | 696..1313 | 100 | <- | Minus |
| 3R | 24914506..24914700 | 501..695 | 100 | <- | Minus |
| 3R | 24915193..24915390 | 303..500 | 100 | <- | Minus |
| 3R | 24915447..24915586 | 163..302 | 100 | <- | Minus |
| 3R | 24915645..24915735 | 72..162 | 100 | <- | Minus |
| 3R | 24917709..24917763 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:34 Download gff for
BS10001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20743431..20743485 | 17..71 | 100 | | Minus |
| arm_3R | 20738992..20739303 | 1314..1625 | 99 | <- | Minus |
| arm_3R | 20739549..20740166 | 696..1313 | 100 | <- | Minus |
| arm_3R | 20740228..20740422 | 501..695 | 100 | <- | Minus |
| arm_3R | 20740915..20741112 | 303..500 | 100 | <- | Minus |
| arm_3R | 20741169..20741308 | 163..302 | 100 | <- | Minus |
| arm_3R | 20741367..20741457 | 72..162 | 100 | <- | Minus |
BS10001.pep Sequence
Translation from 16 to 1626
> BS10001.pep
METSSSSPVKPRRKDKDEDKFRIGATLAFIVVIIGIGVPMWWRTTTVYRV
NLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQNAFSDNEIWSV
EFKQLSPTPMTQEAHTPAALEKLLLENHVQSVGDFMFIEWPKLQEELLLT
TERSALMRSDTPSNKIAQLLHAKILQTYRINQILSTDERMGAKSEAPQPA
YDVIVSVLNPKPRLTHAKWNIAMAVKTYIEPWLAKVSGVSNYTVRSQWKY
RVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSASTTDKPAIN
LVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCL
AAMSDQEAVPYHVSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLE
PRRWEYEAYLRRSAIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITN
SYADILAAKAALLEHRLADASVLAKRAFVASERGFFDASLLAQLYFPDEQ
KYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQS*
BS10001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-PC | 536 | CG44255-PC | 1..536 | 1..536 | 2716 | 100 | Plus |
