Clone Sequence Records
BS10002.3prime Sequence
540 bp (539 high quality bases) assembled on 2006-04-19
> BS10002.3prime
ATGGTCTAGAAAGCTTCTACAGCAGCTTTTCAATGTCCTTGGCGATGTCC
ATGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTT
CACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGG
TCTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTC
ACATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAG
GTGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACT
GATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCC
TTTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGA
GGCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAA
CATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCG
TTCTTGTAATCTCCGTTAGCAGACATGTCGACTGATAACT
BS10002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 83..597 | 531..17 | 2575 | 100 | Minus |
CG12013-PD | 717 | PHGPx-RD | 203..717 | 531..17 | 2575 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..510 | 526..17 | 2550 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..510 | 526..17 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..831 | 531..16 | 2580 | 100 | Minus |
PHGPx-RA | 803 | CG12013-RA | 105..620 | 531..16 | 2580 | 100 | Minus |
PHGPx-RC | 1148 | CG12013-RC | 450..965 | 531..16 | 2580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 531..207 | 1625 | 100 | Minus |
3L | 28110227 | 3L | 3328249..3328443 | 210..16 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:24:28 has no hits.
BS10002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:13 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 195..717 | 17..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:09 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 195..717 | 17..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:14 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..965 | 16..531 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:43 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..965 | 16..531 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:43 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327851..3328183 | 209..540 | 98 | -> | Minus |
3L | 3328251..3328443 | 16..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:14 Download gff for
BS10002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327851..3328183 | 209..540 | 98 | -> | Minus |
arm_3L | 3328251..3328443 | 16..208 | 100 | | Minus |
BS10002.5prime Sequence
540 bp (539 high quality bases) assembled on 2006-04-19
> BS10002.5prime
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACC
BS10002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 83..597 | 12..526 | 2575 | 100 | Plus |
CG12013-PD | 717 | PHGPx-RD | 203..717 | 12..526 | 2575 | 100 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..831 | 12..527 | 2580 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 105..620 | 12..527 | 2580 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 450..965 | 12..527 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 12..336 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 333..527 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:36:23 has no hits.
BS10002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:14 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 195..717 | 3..526 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:11 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 195..717 | 3..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:06 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..965 | 12..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:17 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..965 | 12..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:17 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327854..3328183 | 5..334 | 99 | -> | Plus |
3L | 3328251..3328443 | 335..527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:06 Download gff for
BS10002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3328251..3328443 | 335..527 | 100 | | Plus |
arm_3L | 3327854..3328183 | 5..334 | 99 | -> | Plus |
BS10002.complete Sequence
542 bp (542 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636520
> BS10002.complete
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACCAT
BS10002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 717 | CG12013-PD | 203..717 | 12..526 | 2575 | 100 | Plus |
PHGPx-RC | 597 | CG12013-PC | 83..597 | 12..526 | 2575 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..831 | 12..527 | 2580 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 105..620 | 12..527 | 2580 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 450..965 | 12..527 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 12..336 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 333..527 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:15 has no hits.
BS10002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:44 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 195..717 | 3..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:24 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 424..939 | 12..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:11 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 455..964 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:44 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 424..939 | 12..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:16 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 455..964 | 17..526 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:16 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327866..3328183 | 17..334 | 100 | -> | Plus |
3L | 3328251..3328442 | 335..526 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:11 Download gff for
BS10002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327866..3328183 | 17..334 | 100 | -> | Plus |
arm_3L | 3328251..3328442 | 335..526 | 100 | | Plus |
BS10002.pep Sequence
Translation from 16 to 525
> BS10002.pep
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLL*
BS10002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 1..169 | 887 | 100 | Plus |
PHGPx-PC | 198 | CG12013-PC | 30..198 | 1..169 | 887 | 100 | Plus |
PHGPx-PD | 238 | CG12013-PD | 70..238 | 1..169 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 6..169 | 403 | 50.6 | Plus |