Clone BS10002 Report

Search the DGRC for BS10002

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptPHGPx-RA
Protein status:BS10002.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10002.3prime Sequence

540 bp (539 high quality bases) assembled on 2006-04-19

> BS10002.3prime
ATGGTCTAGAAAGCTTCTACAGCAGCTTTTCAATGTCCTTGGCGATGTCC
ATGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTT
CACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGG
TCTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTC
ACATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAG
GTGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACT
GATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCC
TTTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGA
GGCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAA
CATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCG
TTCTTGTAATCTCCGTTAGCAGACATGTCGACTGATAACT

BS10002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 83..597 531..17 2575 100 Minus
CG12013-PD 717 PHGPx-RD 203..717 531..17 2575 100 Minus
CG12013-PB 510 PHGPx-RB 1..510 526..17 2550 100 Minus
CG12013-PA 510 PHGPx-RA 1..510 526..17 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..831 531..16 2580 100 Minus
PHGPx-RA 803 CG12013-RA 105..620 531..16 2580 100 Minus
PHGPx-RC 1148 CG12013-RC 450..965 531..16 2580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 531..207 1625 100 Minus
3L 28110227 3L 3328249..3328443 210..16 975 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:24:28 has no hits.

BS10002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:13 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PD 195..717 17..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:09 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 195..717 17..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:14 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..965 16..531 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:43 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..965 16..531 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:43 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327851..3328183 209..540 98 -> Minus
3L 3328251..3328443 16..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:14 Download gff for BS10002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327851..3328183 209..540 98 -> Minus
arm_3L 3328251..3328443 16..208 100   Minus

BS10002.5prime Sequence

540 bp (539 high quality bases) assembled on 2006-04-19

> BS10002.5prime
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACC

BS10002.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 83..597 12..526 2575 100 Plus
CG12013-PD 717 PHGPx-RD 203..717 12..526 2575 100 Plus
CG12013-PB 510 PHGPx-RB 1..510 17..526 2550 100 Plus
CG12013-PA 510 PHGPx-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..831 12..527 2580 100 Plus
PHGPx-RA 803 CG12013-RA 105..620 12..527 2580 100 Plus
PHGPx-RC 1148 CG12013-RC 450..965 12..527 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 12..336 1625 100 Plus
3L 28110227 3L 3328249..3328443 333..527 975 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:36:23 has no hits.

BS10002.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:14 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PD 195..717 3..526 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:11 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 195..717 3..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:06 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..965 12..527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:17 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..965 12..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:17 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327854..3328183 5..334 99 -> Plus
3L 3328251..3328443 335..527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:06 Download gff for BS10002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3328251..3328443 335..527 100   Plus
arm_3L 3327854..3328183 5..334 99 -> Plus

BS10002.complete Sequence

542 bp (542 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636520

> BS10002.complete
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACCAT

BS10002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 717 CG12013-PD 203..717 12..526 2575 100 Plus
PHGPx-RC 597 CG12013-PC 83..597 12..526 2575 100 Plus
PHGPx-RA 510 CG12013-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..831 12..527 2580 100 Plus
PHGPx-RA 803 CG12013-RA 105..620 12..527 2580 100 Plus
PHGPx-RC 1148 CG12013-RC 450..965 12..527 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 12..336 1625 100 Plus
3L 28110227 3L 3328249..3328443 333..527 975 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:32:15 has no hits.

BS10002.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:44 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 195..717 3..526 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:24 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 424..939 12..527 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:11 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 455..964 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:44 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 424..939 12..527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:16 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 455..964 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:16 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327866..3328183 17..334 100 -> Plus
3L 3328251..3328442 335..526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:11 Download gff for BS10002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327866..3328183 17..334 100 -> Plus
arm_3L 3328251..3328442 335..526 100   Plus

BS10002.pep Sequence

Translation from 16 to 525

> BS10002.pep
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLL*

BS10002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PA 169 CG12013-PA 1..169 1..169 887 100 Plus
PHGPx-PC 198 CG12013-PC 30..198 1..169 887 100 Plus
PHGPx-PD 238 CG12013-PD 70..238 1..169 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 6..169 403 50.6 Plus