Clone BS10004 Report

Search the DGRC for BS10004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptmol-RA
Protein status:BS10004.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10004.3prime Sequence

913 bp (841 high quality bases) assembled on 2006-04-19

> BS10004.3prime
ATGGTCTAGAAAGCTTTCACCAGTGATCCATGTCACGAATACGCTCCACT
GGGGGATTAGGCAACATCCGCGCCAAAGCATGCTTGTGCAGCGGGGAGAT
TTGCACGGCTGCCGAGGCAATGCTGGATCCTGAATCCTGCGACATGGTGC
GCTGCATATGATGCATGGGATGCTGCACCACCGGACCGCCCACAAACTGC
AGCTGCTGCTGATGGTGGTGCTGGTGGTGCTGATGATGCTGCTGCAACGG
ATGCTGATGCAGTGGATGCGAATGCTGCTGCTGCGCCATTTGCTGCGACC
TTCGGAAGGGATATCTCCAAGGACTCTTTGGTGCATCCGACTGGAAGCCC
TTGTTTTCAACTCCACCGCTGCTGGACACTCCGGCTGGACTATCGCGACG
CGGTGCCGTGCCAGGTTGCAAGTCACGTGCCTTGGAGCTGAGGCGGCGCA
GGATGCGGGAGCCCAGTCCAGGTGGATCCTCTAAGCTGCGACTGTTGCGC
GGCTTTCGATAACGCACATCACTGGACTCCTCCAGAATCACATGGCGATC
GTATGGCGTGCCGTAGTATACCTCCAGCACAGTGGAGAAGGTGTGCGGCC
AAACCAAGTCAATAATGGAGATCAGAACTCCCGCAATAAAGCAGAGAATG
CCTGCCACCAAGACCAGCCAGTAGCACCATCCGAAATGAAACTCCAGGCG
TCCGCCTTCGAGGTGAATGGACAAAGGCCTCTTCGGGAGCAGGCAATGAT
AGCCCACCGTGGTGCAGACCAGCAAGGCACCTGTCAAAGCCTTCATATAG
GCCCCATATCGGGGTACCGCTATCAGCAGCAGGTTCATCAGCAGCCACGA
GGCCAGCGAGGCCCAGAGCATTATGCTCGCGAAATATCCCGCAGCCCCGT
ACTGTCCACCCCA

BS10004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4482-PD 1425 mol-RD 529..1425 913..17 4460 99.8 Minus
CG4482-PE 1092 mol-RE 196..1092 913..17 4460 99.8 Minus
CG4482-PC 1425 mol-RC 529..1425 913..17 4460 99.8 Minus
CG4482-PA 1425 mol-RA 529..1425 913..17 4460 99.8 Minus
CG4482-PB 1092 mol-RB 196..1092 913..17 4460 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RG 2017 CG4482-RG 552..1448 913..17 4470 99.9 Minus
mol-RF 2073 CG4482-RF 608..1504 913..17 4470 99.9 Minus
mol-RD 3012 CG4482-RD 1547..2443 913..17 4470 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14976492..14977085 60..653 2970 100 Plus
2L 23513712 2L 14977214..14977476 651..913 1300 99.6 Plus
2L 23513712 2L 14976316..14976358 17..59 215 100 Plus
Blast to na_te.dros performed 2015-02-10 17:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1934..1972 327..289 114 76.9 Minus

BS10004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:18 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-PB 197..1092 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:16 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4482-PB 197..1092 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:00 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1548..2447 13..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:57 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1548..2447 13..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:57 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14976312..14976358 13..59 95 <- Plus
2L 14976492..14977083 60..651 100 <- Plus
2L 14977215..14977475 652..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:00 Download gff for BS10004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14976312..14976358 13..59 95 <- Plus
arm_2L 14976492..14977083 60..651 100 <- Plus
arm_2L 14977215..14977475 652..912 99   Plus

BS10004.5prime Sequence

962 bp (799 high quality bases) assembled on 2006-04-19

> BS10004.5prime
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTTCAGTGATGTGCGTTATC
GAAAGCCGCGCA

BS10004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4482-PD 1425 mol-RD 1..946 17..962 4705 99.8 Plus
CG4482-PC 1425 mol-RC 1..946 17..962 4705 99.8 Plus
CG4482-PA 1425 mol-RA 1..946 17..962 4705 99.8 Plus
CG4482-PE 1092 mol-RE 1..613 350..962 3040 99.8 Plus
CG4482-PB 1092 mol-RB 1..613 350..962 3040 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 2073 CG4482-RF 79..1025 16..962 4720 99.9 Plus
mol-RD 3012 CG4482-RD 1018..1964 16..962 4720 99.9 Plus
mol-RC 2455 CG4482-RC 461..1407 16..962 4720 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14977214..14977647 807..374 2170 100 Minus
2L 23513712 2L 14992307..14992472 181..16 830 100 Minus
2L 23513712 2L 14976928..14977085 962..805 775 99.4 Minus
2L 23513712 2L 14983950..14984084 374..240 675 100 Minus
2L 23513712 2L 14984196..14984256 239..179 305 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:52:32 has no hits.

BS10004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:19 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-PA 1..945 17..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:17 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4482-PA 1..945 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:17 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-RC 454..1406 9..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:18:57 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-RC 454..1406 9..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:18:57 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14983950..14984084 240..374 100 <- Minus
2L 14984196..14984253 182..239 100 <- Minus
2L 14992307..14992475 9..181 97   Minus
2L 14976929..14977083 807..961 99 <- Minus
2L 14977215..14977646 375..806 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:17 Download gff for BS10004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14976929..14977083 807..961 99 <- Minus
arm_2L 14977215..14977646 375..806 100 <- Minus
arm_2L 14983950..14984084 240..374 100 <- Minus
arm_2L 14984196..14984253 182..239 100 <- Minus
arm_2L 14992307..14992475 9..181 97   Minus

BS10004.complete Sequence

1457 bp (1457 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636521

> BS10004.complete
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTCCAGTGATGTGCGTTATC
GAAAGCCGCGCAACAGTCGCAGCTTAGAGGATCCACCTGGACTGGGCTCC
CGCATCCTGCGCCGCCTCAGCTCCAAGGCACGTGACTTGCAACCTGGCAC
GGCACCGCGTCGCGATAGTCCAGCCGGAGTGTCCAGCAGCGGTGGAGTTG
AAAACAAGGGCTTCCAGTCGGATGCACCAAAGAGTCCTTGGAGATATCCC
TTCCGAAGGTCGCAGCAAATGGCGCAGCAGCAGCATTCGCATCCACTGCA
TCAGCATCCGTTGCAGCAGCATCATCAGCACCACCAGCACCACCATCAGC
AGCAGCTGCAGTTTGTGGGCGGTCCGGTGGTGCAGCATCCCATGCATCAT
ATGCAGCGCACCATGTCGCAGGATTCAGGATCCAGCATTGCCTCGGCAGC
CGTGCAAATCTCCCCGCTGCACAAGCATGCTTTGGCGCGGATGTTGCCTA
ATCCCCCAGTGGAGCGTATTCGTGACATGGATCACTGGTGAAAGCTTTCT
AGACCAT

BS10004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 1425 CG4482-PF 1..1425 17..1441 7125 100 Plus
mol-RD 1425 CG4482-PD 1..1425 17..1441 7125 100 Plus
mol-RC 1425 CG4482-PC 1..1425 17..1441 7125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 2073 CG4482-RF 79..1504 16..1441 7130 100 Plus
mol-RD 3012 CG4482-RD 1018..2443 16..1441 7130 100 Plus
mol-RC 2455 CG4482-RC 461..1886 16..1441 7130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14976492..14977085 1398..805 2970 100 Minus
2L 23513712 2L 14977214..14977647 807..374 2170 100 Minus
2L 23513712 2L 14992307..14992472 181..16 830 100 Minus
2L 23513712 2L 14983950..14984084 374..240 675 100 Minus
2L 23513712 2L 14984196..14984256 239..179 305 100 Minus
2L 23513712 2L 14976316..14976358 1441..1399 215 100 Minus
Blast to na_te.dros performed 2014-11-28 07:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1934..1972 1131..1169 114 76.9 Plus

BS10004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:45 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1..1425 17..1441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:57 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1016..2439 17..1440 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:56 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 462..1885 17..1440 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:45 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1008..2444 9..1445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:20 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 462..1885 17..1440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:20 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14976317..14976358 1399..1440 100 <- Minus
2L 14976492..14977083 807..1398 100 <- Minus
2L 14977215..14977646 375..806 100 <- Minus
2L 14983950..14984084 240..374 100 <- Minus
2L 14984196..14984253 182..239 100 <- Minus
2L 14992307..14992471 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:56 Download gff for BS10004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14976317..14976358 1399..1440 100 <- Minus
arm_2L 14976492..14977083 807..1398 100 <- Minus
arm_2L 14977215..14977646 375..806 100 <- Minus
arm_2L 14983950..14984084 240..374 100 <- Minus
arm_2L 14984196..14984253 182..239 100 <- Minus
arm_2L 14992307..14992471 17..181 100   Minus

BS10004.pep Sequence

Translation from 16 to 1440

> BS10004.pep
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHW*

BS10004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
mol-PF 474 CG4482-PF 1..474 1..474 2543 100 Plus
mol-PD 474 CG4482-PD 1..474 1..474 2543 100 Plus
mol-PC 474 CG4482-PC 1..474 1..474 2543 100 Plus
mol-PA 474 CG4482-PA 1..474 1..474 2543 100 Plus
mol-PG 330 CG4482-PG 1..330 145..474 1784 100 Plus