Clone Sequence Records
BS10004.3prime Sequence
913 bp (841 high quality bases) assembled on 2006-04-19
> BS10004.3prime
ATGGTCTAGAAAGCTTTCACCAGTGATCCATGTCACGAATACGCTCCACT
GGGGGATTAGGCAACATCCGCGCCAAAGCATGCTTGTGCAGCGGGGAGAT
TTGCACGGCTGCCGAGGCAATGCTGGATCCTGAATCCTGCGACATGGTGC
GCTGCATATGATGCATGGGATGCTGCACCACCGGACCGCCCACAAACTGC
AGCTGCTGCTGATGGTGGTGCTGGTGGTGCTGATGATGCTGCTGCAACGG
ATGCTGATGCAGTGGATGCGAATGCTGCTGCTGCGCCATTTGCTGCGACC
TTCGGAAGGGATATCTCCAAGGACTCTTTGGTGCATCCGACTGGAAGCCC
TTGTTTTCAACTCCACCGCTGCTGGACACTCCGGCTGGACTATCGCGACG
CGGTGCCGTGCCAGGTTGCAAGTCACGTGCCTTGGAGCTGAGGCGGCGCA
GGATGCGGGAGCCCAGTCCAGGTGGATCCTCTAAGCTGCGACTGTTGCGC
GGCTTTCGATAACGCACATCACTGGACTCCTCCAGAATCACATGGCGATC
GTATGGCGTGCCGTAGTATACCTCCAGCACAGTGGAGAAGGTGTGCGGCC
AAACCAAGTCAATAATGGAGATCAGAACTCCCGCAATAAAGCAGAGAATG
CCTGCCACCAAGACCAGCCAGTAGCACCATCCGAAATGAAACTCCAGGCG
TCCGCCTTCGAGGTGAATGGACAAAGGCCTCTTCGGGAGCAGGCAATGAT
AGCCCACCGTGGTGCAGACCAGCAAGGCACCTGTCAAAGCCTTCATATAG
GCCCCATATCGGGGTACCGCTATCAGCAGCAGGTTCATCAGCAGCCACGA
GGCCAGCGAGGCCCAGAGCATTATGCTCGCGAAATATCCCGCAGCCCCGT
ACTGTCCACCCCA
BS10004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4482-PD | 1425 | mol-RD | 529..1425 | 913..17 | 4460 | 99.8 | Minus |
CG4482-PE | 1092 | mol-RE | 196..1092 | 913..17 | 4460 | 99.8 | Minus |
CG4482-PC | 1425 | mol-RC | 529..1425 | 913..17 | 4460 | 99.8 | Minus |
CG4482-PA | 1425 | mol-RA | 529..1425 | 913..17 | 4460 | 99.8 | Minus |
CG4482-PB | 1092 | mol-RB | 196..1092 | 913..17 | 4460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RG | 2017 | CG4482-RG | 552..1448 | 913..17 | 4470 | 99.9 | Minus |
mol-RF | 2073 | CG4482-RF | 608..1504 | 913..17 | 4470 | 99.9 | Minus |
mol-RD | 3012 | CG4482-RD | 1547..2443 | 913..17 | 4470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14976492..14977085 | 60..653 | 2970 | 100 | Plus |
2L | 23513712 | 2L | 14977214..14977476 | 651..913 | 1300 | 99.6 | Plus |
2L | 23513712 | 2L | 14976316..14976358 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1934..1972 | 327..289 | 114 | 76.9 | Minus |
BS10004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:18 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-PB | 197..1092 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:16 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4482-PB | 197..1092 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:00 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1548..2447 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:57 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1548..2447 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:57 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14976312..14976358 | 13..59 | 95 | <- | Plus |
2L | 14976492..14977083 | 60..651 | 100 | <- | Plus |
2L | 14977215..14977475 | 652..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:00 Download gff for
BS10004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14976312..14976358 | 13..59 | 95 | <- | Plus |
arm_2L | 14976492..14977083 | 60..651 | 100 | <- | Plus |
arm_2L | 14977215..14977475 | 652..912 | 99 | | Plus |
BS10004.5prime Sequence
962 bp (799 high quality bases) assembled on 2006-04-19
> BS10004.5prime
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTTCAGTGATGTGCGTTATC
GAAAGCCGCGCA
BS10004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4482-PD | 1425 | mol-RD | 1..946 | 17..962 | 4705 | 99.8 | Plus |
CG4482-PC | 1425 | mol-RC | 1..946 | 17..962 | 4705 | 99.8 | Plus |
CG4482-PA | 1425 | mol-RA | 1..946 | 17..962 | 4705 | 99.8 | Plus |
CG4482-PE | 1092 | mol-RE | 1..613 | 350..962 | 3040 | 99.8 | Plus |
CG4482-PB | 1092 | mol-RB | 1..613 | 350..962 | 3040 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 2073 | CG4482-RF | 79..1025 | 16..962 | 4720 | 99.9 | Plus |
mol-RD | 3012 | CG4482-RD | 1018..1964 | 16..962 | 4720 | 99.9 | Plus |
mol-RC | 2455 | CG4482-RC | 461..1407 | 16..962 | 4720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14977214..14977647 | 807..374 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 14992307..14992472 | 181..16 | 830 | 100 | Minus |
2L | 23513712 | 2L | 14976928..14977085 | 962..805 | 775 | 99.4 | Minus |
2L | 23513712 | 2L | 14983950..14984084 | 374..240 | 675 | 100 | Minus |
2L | 23513712 | 2L | 14984196..14984256 | 239..179 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:52:32 has no hits.
BS10004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:19 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-PA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:17 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4482-PA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:17 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 454..1406 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:18:57 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 454..1406 | 9..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:18:57 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
2L | 14992307..14992475 | 9..181 | 97 | | Minus |
2L | 14976929..14977083 | 807..961 | 99 | <- | Minus |
2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:17 Download gff for
BS10004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14976929..14977083 | 807..961 | 99 | <- | Minus |
arm_2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
arm_2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
arm_2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
arm_2L | 14992307..14992475 | 9..181 | 97 | | Minus |
BS10004.complete Sequence
1457 bp (1457 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636521
> BS10004.complete
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTCCAGTGATGTGCGTTATC
GAAAGCCGCGCAACAGTCGCAGCTTAGAGGATCCACCTGGACTGGGCTCC
CGCATCCTGCGCCGCCTCAGCTCCAAGGCACGTGACTTGCAACCTGGCAC
GGCACCGCGTCGCGATAGTCCAGCCGGAGTGTCCAGCAGCGGTGGAGTTG
AAAACAAGGGCTTCCAGTCGGATGCACCAAAGAGTCCTTGGAGATATCCC
TTCCGAAGGTCGCAGCAAATGGCGCAGCAGCAGCATTCGCATCCACTGCA
TCAGCATCCGTTGCAGCAGCATCATCAGCACCACCAGCACCACCATCAGC
AGCAGCTGCAGTTTGTGGGCGGTCCGGTGGTGCAGCATCCCATGCATCAT
ATGCAGCGCACCATGTCGCAGGATTCAGGATCCAGCATTGCCTCGGCAGC
CGTGCAAATCTCCCCGCTGCACAAGCATGCTTTGGCGCGGATGTTGCCTA
ATCCCCCAGTGGAGCGTATTCGTGACATGGATCACTGGTGAAAGCTTTCT
AGACCAT
BS10004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 1425 | CG4482-PF | 1..1425 | 17..1441 | 7125 | 100 | Plus |
mol-RD | 1425 | CG4482-PD | 1..1425 | 17..1441 | 7125 | 100 | Plus |
mol-RC | 1425 | CG4482-PC | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 2073 | CG4482-RF | 79..1504 | 16..1441 | 7130 | 100 | Plus |
mol-RD | 3012 | CG4482-RD | 1018..2443 | 16..1441 | 7130 | 100 | Plus |
mol-RC | 2455 | CG4482-RC | 461..1886 | 16..1441 | 7130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14976492..14977085 | 1398..805 | 2970 | 100 | Minus |
2L | 23513712 | 2L | 14977214..14977647 | 807..374 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 14992307..14992472 | 181..16 | 830 | 100 | Minus |
2L | 23513712 | 2L | 14983950..14984084 | 374..240 | 675 | 100 | Minus |
2L | 23513712 | 2L | 14984196..14984256 | 239..179 | 305 | 100 | Minus |
2L | 23513712 | 2L | 14976316..14976358 | 1441..1399 | 215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1934..1972 | 1131..1169 | 114 | 76.9 | Plus |
BS10004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:45 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1..1425 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:57 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1016..2439 | 17..1440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:56 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 462..1885 | 17..1440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:45 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1008..2444 | 9..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:20 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 462..1885 | 17..1440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:20 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14976317..14976358 | 1399..1440 | 100 | <- | Minus |
2L | 14976492..14977083 | 807..1398 | 100 | <- | Minus |
2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
2L | 14992307..14992471 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:56 Download gff for
BS10004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14976317..14976358 | 1399..1440 | 100 | <- | Minus |
arm_2L | 14976492..14977083 | 807..1398 | 100 | <- | Minus |
arm_2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
arm_2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
arm_2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
arm_2L | 14992307..14992471 | 17..181 | 100 | | Minus |
BS10004.pep Sequence
Translation from 16 to 1440
> BS10004.pep
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHW*
BS10004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-PF | 474 | CG4482-PF | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PD | 474 | CG4482-PD | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PC | 474 | CG4482-PC | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PA | 474 | CG4482-PA | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PG | 330 | CG4482-PG | 1..330 | 145..474 | 1784 | 100 | Plus |